| SRR4457249 | 2nd_leaf | DAH4 | 29.67 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 25.06 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 24.17 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 24.27 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 23.90 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 21.16 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 27.14 | HC |
| SRR358795 | callus | wt | 54.66 | HC |
| SRR358796 | callus | wt | 53.11 | HC |
| SRR358797 | callus | wt | 60.72 | HC |
| SRR358798 | callus | wt | 54.69 | HC |
| SRR5560727 | caryopsis | wild_type | 18.94 | HC |
| SRR5560728 | caryopsis | wild_type | 20.85 | HC |
| SRR5560729 | caryopsis | wild_type | 31.93 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 29.49 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 36.13 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 30.03 | HC |
| SRR4947495 | root | control | 15.08 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 20.99 | HC |
| SRR7265404 | coleoptile | 2dN | 25.13 | HC |
| SRR7265405 | coleoptile | 2dN | 23.01 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 26.56 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 20.12 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 39.22 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 47.64 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 38.89 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 41.97 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 45.52 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 21.36 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 37.64 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 39.65 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 20.96 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 37.34 | HC |
| SRR7265373 | embryo | dry seed 0 h | 20.84 | HC |
| SRR7265374 | embryo | dry seed 0 h | 21.55 | HC |
| SRR7265376 | embryo | 1hA | 19.97 | HC |
| SRR7265377 | embryo | 1hA | 21.02 | HC |
| SRR7265378 | embryo | 1hA | 21.01 | HC |
| SRR7265379 | embryo | 1hN | 21.49 | HC |
| SRR7265380 | embryo | 1hN | 22.96 | HC |
| SRR7265381 | embryo | 1hN | 21.69 | HC |
| SRR7265382 | embryo | 3hA | 33.85 | HC |
| SRR7265383 | embryo | 3hA | 33.26 | HC |
| SRR7265384 | embryo | 3hA | 34.63 | HC |
| SRR7265385 | embryo | 3hN | 32.11 | HC |
| SRR7265386 | embryo | 3hN | 28.35 | HC |
| SRR7265387 | embryo | 3hN | 27.90 | HC |
| SRR7265388 | embryo | 12hA | 34.09 | HC |
| SRR7265389 | embryo | 12hA | 33.14 | HC |
| SRR7265390 | embryo | 12hA | 28.07 | HC |
| SRR7265391 | embryo | 12hN | 36.12 | HC |
| SRR7265392 | embryo | 12hN | 30.94 | HC |
| SRR7265393 | embryo | 12hN | 32.13 | HC |
| SRR7265397 | embryo | 24hN | 30.27 | HC |
| SRR7265398 | embryo | 24hN | 28.31 | HC |
| SRR7265399 | embryo | 24hN | 26.62 | HC |
| SRR976168 | flag_leaf | wild_type | 20.94 | HC |
| SRR4457231 | flag_leaf | DAH4 | 18.25 | HC |
| SRR4457232 | flag_leaf | DAH4 | 27.21 | HC |
| SRR4457233 | flag_leaf | DAH4 | 30.02 | HC |
| SRR4457234 | flag_leaf | DAH12 | 16.07 | HC |
| SRR4457236 | flag_leaf | DAH12 | 18.95 | HC |
| SRR4457243 | flag_leaf | DAH36 | 28.57 | HC |
| SRR4457244 | flag_leaf | DAH36 | 21.99 | HC |
| SRR4457245 | flag_leaf | DAH36 | 27.15 | HC |
| SRR1213690 | flower | wt(flower buds) | 15.08 | HC |
| SRR1213691 | flower | wt | 20.00 | HC |
| SRR8060835 | leaf | wild_type | 13.86 | HC |
| SRR8060836 | leaf | wild_type | 17.16 | HC |
| SRR8060837 | leaf | wild_type | 13.48 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 19.06 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 23.65 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 19.25 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 24.76 | HC |
| SRR504365 | leaf | wt | 26.35 | HC |
| SRR8611900 | leaf | Non-inoculated | 20.91 | HC |
| SRR8611901 | leaf | Non-inoculated | 20.08 | HC |
| SRR8611902 | leaf | Non-inoculated | 22.66 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 20.80 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 21.31 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 23.53 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 21.14 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 21.23 | HC |
| SRR1213692 | leaf | wt | 16.43 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 13.95 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 12.21 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 13.02 | HC |
| SRR6502088 | leaf | control | 13.76 | HC |
| SRR6502089 | leaf | control | 12.75 | HC |
| SRR6502090 | leaf | control | 10.63 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 13.13 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 17.09 | HC |
| SRR6502101 | leaf | control | 11.07 | HC |
| SRR6502102 | leaf | control | 11.01 | HC |
| SRR5856927 | leaf | control | 24.70 | HC |
| SRR5856928 | leaf | control | 20.33 | HC |
| SRR5856929 | leaf | control | 18.82 | HC |
| SRR5856930 | leaf | salt | 11.58 | HC |
| SRR5856931 | leaf | salt | 13.79 | HC |
| SRR5856932 | leaf | salt | 12.45 | HC |
| SRR5856933 | leaf | control | 21.60 | HC |
| SRR5856934 | leaf | control | 23.34 | HC |
| SRR5856935 | leaf | control | 22.54 | HC |
| SRR5856936 | leaf | salt | 14.22 | HC |
| SRR5856937 | leaf | salt | 15.00 | HC |
| SRR5856938 | leaf | salt | 16.47 | HC |
| SRR5110429 | panicle | Dawn | 25.11 | HC |
| SRR5110431 | panicle | Dawn | 21.20 | HC |
| SRR4947496 | root | control | 22.35 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 16.49 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 17.93 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 19.72 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 18.43 | HC |
| SRR5110437 | panicle | Dawn + 7h | 15.45 | HC |
| SRR5110438 | panicle | Dawn + 7h | 13.74 | HC |
| SRR5110439 | panicle | Dawn + 7h | 15.94 | HC |
| SRR5110440 | panicle | Dawn + 7h | 14.20 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 10.51 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 16.05 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 14.03 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 16.43 | HC |
| SRR5110445 | panicle | Dusk | 13.41 | HC |
| SRR5110446 | panicle | Dusk | 16.29 | HC |
| SRR5110451 | panicle | Dawn + 14h | 14.90 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 20.34 | HC |
| SRR5110457 | panicle | Dawn + 21h | 18.40 | HC |
| SRR5110459 | panicle | Dawn + 21h | 19.30 | HC |
| SRR5110460 | panicle | Dawn + 21h | 29.70 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 8.24 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 29.39 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 33.77 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 33.59 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 34.72 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 47.55 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 35.19 | HC |
| SRR5126147 | root | "mock,1_day" | 23.83 | HC |
| SRR5126148 | root | "mock,1_day" | 16.75 | HC |
| SRR5126149 | root | "mock,1_day" | 46.10 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 33.50 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 37.84 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 19.47 | HC |
| SRR5126153 | root | "mock,7_days" | 27.54 | HC |
| SRR5126155 | root | "mock,7_days" | 37.02 | HC |
| SRR5126157 | root | "mock,7_days" | 61.66 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 33.24 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 38.94 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 30.28 | HC |
| SRR5126165 | root | "mock,14_days" | 46.36 | HC |
| SRR5126167 | root | "mock,14_days" | 40.43 | HC |
| SRR5126169 | root | "mock,14_days" | 40.11 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 37.30 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 51.08 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 36.50 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 9.94 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 12.63 | HC |
| SRR1213694 | root | wt | 14.68 | HC |
| SRR1213695 | root | wt | 11.55 | HC |
| SRR4947478 | root | control | 23.71 | HC |
| SRR4947479 | root | control | 20.22 | HC |
| SRR4947480 | root | control | 21.46 | HC |
| SRR4947481 | root | control | 20.19 | HC |
| SRR4947482 | root | Al | 42.71 | HC |
| SRR4947483 | root | Al | 26.04 | HC |
| SRR4947484 | root | Al | 16.85 | HC |
| SRR4947485 | root | Al | 20.42 | HC |
| SRR4947487 | root | control | 22.19 | HC |
| SRR4947488 | root | control | 20.15 | HC |
| SRR4947489 | root | control | 17.50 | HC |
| SRR4947490 | root | Al | 23.95 | HC |
| SRR4947492 | root | Al | 18.21 | HC |
| SRR4947493 | root | Al | 20.02 | HC |
| SRR4947494 | root | control | 22.43 | HC |
| SRR4947497 | root | control | 13.30 | HC |
| SRR4947498 | root | Al | 14.38 | HC |
| SRR4947499 | root | Al | 17.91 | HC |
| SRR4947500 | root | Al | 17.09 | HC |
| SRR4947501 | root | Al | 16.52 | HC |
| SRR4947502 | root | control | 19.20 | HC |
| SRR4947503 | root | control | 22.22 | HC |
| SRR4947504 | root | control | 20.30 | HC |
| SRR4947505 | root | control | 20.52 | HC |
| SRR4947506 | root | Al | 26.28 | HC |
| SRR4947507 | root | Al | 16.82 | HC |
| SRR4947508 | root | Al | 19.68 | HC |
| SRR4947509 | root | Al | 23.91 | HC |
| SRR6502091 | root | 100 mM NaCl | 26.31 | HC |
| SRR6502092 | root | 100 mM NaCl | 29.35 | HC |
| SRR6502093 | root | 100 mM NaCl | 30.46 | HC |
| SRR6502094 | root | control | 26.96 | HC |
| SRR6502095 | root | control | 23.73 | HC |
| SRR6502096 | root | control | 25.00 | HC |
| SRR6502103 | root | 100 mM NaCl | 30.48 | HC |
| SRR6502104 | root | 100 mM NaCl | 33.10 | HC |
| SRR6502105 | root | 100 mM NaCl | 31.01 | HC |
| SRR6502106 | root | control | 24.00 | HC |
| SRR6502107 | root | control | 22.31 | HC |
| SRR6502108 | root | control | 24.75 | HC |
| SRR1740434 | root_differentiation_zone | wt | 25.17 | HC |
| SRR1740435 | root_differentiation_zone | wt | 21.77 | HC |
| SRR1740436 | root_differentiation_zone | wt | 31.60 | HC |
| SRR1740431 | root_elongation_zone | wt | 11.33 | HC |
| SRR2857719 | seedling | drought_stress_0h | 24.08 | HC |
| SRR2857720 | seedling | drought_stress_1h | 22.85 | HC |
| SRR1944583 | seedling | no_treatment | 11.24 | HC |
| SRR358791 | seedling | wt | 17.59 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.95 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 11.84 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 9.61 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.26 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.28 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.56 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.75 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 12.30 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.33 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 16.70 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 17.52 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 15.43 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 20.60 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 19.65 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 19.37 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 20.42 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 20.34 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 22.43 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 28.86 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 30.40 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 12.72 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 14.47 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 22.26 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 20.21 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 20.43 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 28.13 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 29.79 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 21.28 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 35.37 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 28.97 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 27.69 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 24.94 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 23.18 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 26.69 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 21.10 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 23.60 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 21.62 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 26.27 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 23.76 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 19.76 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 28.24 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 23.99 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 22.55 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 33.85 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 32.50 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 16.02 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 18.36 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 15.02 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 12.44 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 10.91 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 9.65 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 18.26 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 12.96 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 17.39 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 26.01 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 32.73 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 26.83 | HC |