Chr:
Chr1
Start:
21922036
End:
21928050
Strand:
-
Ref_name:
LOC4326349
Sequence
(XM_015765691.2):
GACUUCAGAGUCCUGCAUCUUACAAAAUUGUAUUCGAGAGGUGUUCUAGAUUGAUUUCUUUUCUUUGUUUUGCAUGGAGAAAUAGAAAAAGAAUGAGUUGUUGGCGUGGUUCUAACUUUCAACUUCCAGUUGGACCCUGCACAAUAAUUCAUAAAAGUUAGAGUAAAUUUCACUUCGGGCCACCUUUUGUUACCUAUGUUUCACUUUGGACCACCCUUUAAACAAUAUUUUCACUUUGGACUGGGUAAACUUACCUUUAUUUCACUUUGGACCACCCAACUCUCUUCUCAAGCAUAUGAAUGAUCUUGAUUACGCCGUCUCCUACUCGUCAAUGAACUGCCACAGCUAUAUGUAAGACUAUUUCUUCGACAUAUUACAAGUUGGAUGUAGAUGGAUAAAAGAGUGAGGGUGGUCCAAUGUGAAACAAAGGUAAAAAUACCCGGUCCAAAGUGAAAACAUUGGUCCUAAGGUGGUCCAAAGCGAAACAUCGGUAAUAAAAGGUGGCCCAAAGUAAAAUUAACUCUAAAAGUUAAUUACAGACUGAAACCAAUUUCUAAGUUCAACAAAAAAAUAAUACAUUGGGUACUUGAAAGUACUUGGCACUGAAAAGAUUAGCUCCCAAAAAAAAAUAAUUCUACAGUAAGAUUUACACUGUACCGUAAAAUAUAAAGUGGAAAAAUGACAGAUUGAUGCUUUUGUUCUACAAAUUAGGAUGUGGUAGUCCCCUAAAAAAAUUGAAACGUGAUAAAUACCACUAGAUCAUGGAUGGAGCUACCUAAUCUUUGCAUCAACAUACAACUUCCCUUAUUAGGUGAGAUAUCCUUUUCAGAUAUGUAUGCCCCCUUGGUAGGAAAUCCGCAAACCAUGUAAUUAGCCAAAAAAAAAGAAGAAGGAGAAGACAUAACAGAUGGUUCUUUUAGAAGGUAGUAGUUCCACUGAUCAUUUGAUUCAGAUCAUGAGAAUCAGUAGGUAACACAUUUUCAAUAGAAAAUGACUGAAAAGUUUUGGUUCAAAUAGAUAAACCACGGGAAACACCAAAGGAACACAGGCUGGUUGUUCUCCAAUGAUACCAUGAUGAAUUUUGCAGCAAAACCCAGACGCUUAAAUCUGAGAAAAUGCAGAGGUUAACAUGGAAAAUGACUAACAACCAAAAUUAUGAGAAAAAUUGACUAAGUUCUAAUAAUCACAUGUAGGAUUACUAUUUGGAGUGUCCAGAGACCAAAUUAUGGUUUGCAUUUGAGUAUUCCAUAGCUUGCAAGAACUUCAUUUUUGCAGGAUUGCAGUUCCCUAGCUUCAGAAGAAUAGGUCACCUAGCCUAUAGGAUUACUUAGCUUUACUUCAAAGUAAAAGCUACUUUUGUGCACAAUGAUUAUCUGGGAUGUUGGGCAUGUGUGGUUGAGGAAGUAGUACCUGAUACCAUUUUCCAGCUUUGCUUUUGUCCAUAAAGAGAGCUGUUCAUACAAAAGAAUCACAACAAAUUCACUACACAUCUCAUACCCAAAAGAUCAUUGCUAGCUAAAUACAGGAAAUAUAUUUUUAUUUUAAAUUCCUAAGAGACAAUUACAGCUCAAGCAACAUGUUCUUGUGUCCUUGGUUGGCCUCCAUGUGACAGAUGAUUAGGUUGACCUUAGUACAACCAAACCCUCAACUCAGCUCAACUAUUCCAAUUUCCAACCAAGAAACCAGAAAACAAAAUCCUAAAUAGCACAGGAUCCAACUAUUAUUCCUCAUGCUCUUCUCUUAGGUUCUCUUAGGAUCAAGUAAAACAAAUAAAGAUUCAGAGAAAAUAAAAUAAUAACAAUAAAAAAAUCAUCACCCUUUAUGGUAUUUGAUUGACCCAGUUGGAGCAAUGAGCCAAUGACACUCUGUCAAAACUACAUCGUGCAAGCCACACUGCAAAAUCAUCCUCGACCAACCACAAUCAAUGCCUGCAAUUUGCCGGUGUCAAUUUAGCUGUCACUCUCCAGCAACUGCCCUACCAUGUAUGAUGCUCCUGUAUUCUGUCUGUAUAUAUAUAUCAUACAGCACCAUUAGCCUUUUUUAAUCCAGAUCAAGGGGCUCCAUUAGUGCACCUAUACAGAGACCCGAAACCAACAGCUCAGAAUUUCUCAGUCUUCUCGUUCACAUUGAAAGCUUGAAGCUUUCAGUCUUCUCUUCUGCAGCUCUGCUUAGCUUCCCCUGAUUAUCCCAAAGCUUCAGUUCCAUCCAAUCAGCAGCUUUGAACUGAGCAAGGAAGUGAAGAACAAGGAAAGAAAGAUAUGGAAGCCUUAACCAAAGUCAUGGACAAGGUCAAGGAAGUGAAGAGUAACCCAGAAGUGGUGGAGAAGCUGGACAAGGUCAAGGAAGACAUCAGCAGCCUUGCUCAUGCUUUACAUCUGGGAAAACAUGAUAAGGAACAUGAAUCUGAGGAGAAGGCAAAGGAAGGUGAGACUGCGAAAAGGGCCGACGAGGGCGCCUCUGCCAGCAAGUCUGAAGAUUCAGGUGUGGUAGUACAAGCUGUGGAAGAGAUUCAGGCCGUUGUCACAGCUGUGCAGCAGCAGCUGCACACAGAAGGAGCUGCAGCUGAAACUCCCAAUGAGGCUGCUGCUGCUGAAACUUCAGCAGAAGGAGAGAAGCCUGAAGAAUCAAAGAGAGAUGUAGAGAAGGAUGAUCCGUCGAAGCGGCUCGACUUCAAGGGCUUCUUUGCCAUGAUAUUUGAGAGGUGCUGCAACCCUGGGAACAAGAAGAAAGAUUAAGCUUGGAAGAAAAUGAUGUGGAUUUUUUUUGUUUUUUUGUUUUUGUGUGUGUGUUCUUGGAGACUGAAGAAUGAUGUGCAUGGGAUUGUGGGAUGGUGUACAGUUUGCAGUUUGUGUGUUUUCUUCAGAGUUAAUUGUCUGCUUUUGGUGUUUUAUCCUUUUAUGUGUUGAUGGAUGUAUGUCAAAGAGUACUUUGUGAAAUUCUUGUUAGCCUUGUGAGCUUGAUCUUACUUAUGUGAAUGAAAGAAUUUAUUUAUUUAUUUUAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.89%
ME_num:
MEP:
40.04%
HE_num:
HEP:
53.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.89
Avg Expression:
144.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.52980473303285 | 4.82380337052635e-33 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.44062785715825 | 0.000130331423134793 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 8.31284015594711 | 7.12325318630028e-299 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.41406063071551 | 3.46255015295281e-116 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.930100910451 | 1.41920487444739e-263 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.70060067705845 | 4.37605074181929e-173 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.14566768958767 | 0.0114176515000521 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.30579439615832 | 2.28432020942631e-33 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.02190655694561 | 0.00904189831947156 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.13240925721181 | 1.35197745828128e-07 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.37679258953632 | 1.79643107651083e-05 |
| 12 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.90483398173235 | 4.45433899440753e-13 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.36587972092189 | 2.16228071522167e-13 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.06665194950273 | 7.69338212980472e-211 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.03032915178806 | 6.1614587787774e-120 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.44261791103911 | 0.000432742156410129 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.34418388874937 | 2.99282089959258e-10 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.06192349298963 | 8.22935778437005e-66 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.0281961797576 | 4.98285431180469e-151 |