| SRR4457252 | 2nd_leaf | DAH12 | 18.60 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 18.65 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 20.26 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 22.51 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 24.57 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 20.33 | HC |
| SRR4947495 | root | control | 131.62 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 28.89 | HC |
| SRR7265400 | coleoptile | 2dA | 46.38 | HC |
| SRR7265401 | coleoptile | 2dA | 51.35 | HC |
| SRR7265402 | coleoptile | 2dA | 43.91 | HC |
| SRR7265403 | coleoptile | 2dN | 46.78 | HC |
| SRR7265404 | coleoptile | 2dN | 30.65 | HC |
| SRR7265405 | coleoptile | 2dN | 38.49 | HC |
| SRR7265406 | coleoptile | 3dA | 89.01 | HC |
| SRR7265407 | coleoptile | 3dA | 84.55 | HC |
| SRR7265408 | coleoptile | 3dA | 58.95 | HC |
| SRR7265409 | coleoptile | 3dN | 175.72 | HC |
| SRR7265410 | coleoptile | 3dN | 148.35 | HC |
| SRR7265411 | coleoptile | 3dN | 154.05 | HC |
| SRR7265412 | coleoptile | 4dA | 37.87 | HC |
| SRR7265413 | coleoptile | 4dA | 48.69 | HC |
| SRR7265414 | coleoptile | 4dA | 49.33 | HC |
| SRR7265415 | coleoptile | 4dN | 135.67 | HC |
| SRR7265416 | coleoptile | 4dN | 130.17 | HC |
| SRR7265417 | coleoptile | 4dN | 117.41 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 77.83 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 74.54 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 76.03 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 30.62 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 14.64 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 31.02 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 16.38 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 22.99 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 27.06 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 32.40 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 23.00 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 25.89 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 23.58 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 13.90 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 21.05 | HC |
| SRR7265394 | embryo | 24hA | 29.34 | HC |
| SRR7265396 | embryo | 24hA | 23.60 | HC |
| SRR4457232 | flag_leaf | DAH4 | 15.98 | HC |
| SRR4457233 | flag_leaf | DAH4 | 18.30 | HC |
| SRR4457234 | flag_leaf | DAH12 | 20.43 | HC |
| SRR4457235 | flag_leaf | DAH12 | 20.38 | HC |
| SRR4457236 | flag_leaf | DAH12 | 17.83 | HC |
| SRR4457245 | flag_leaf | DAH36 | 15.40 | HC |
| SRR8060835 | leaf | wild_type | 28.99 | HC |
| SRR8060836 | leaf | wild_type | 30.98 | HC |
| SRR8060837 | leaf | wild_type | 26.98 | HC |
| SRR8240824 | leaf | wild_type | 21.43 | HC |
| SRR8240825 | leaf | wild_type | 19.02 | HC |
| SRR8240826 | leaf | wild_type | 10.02 | HC |
| SRR8240819 | leaf | wild_type | 9.32 | HC |
| SRR8240820 | leaf | wild_type | 9.87 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 50.82 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 74.04 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 42.70 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 53.26 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 17.86 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 17.11 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 28.80 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 16.49 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 22.56 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 21.20 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 23.53 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 17.96 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 17.00 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 27.81 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 25.84 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 14.47 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 18.50 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 14.66 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 24.76 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 18.07 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 22.19 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 16.45 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 18.22 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 16.45 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 18.22 | HC |
| SRR1761529 | leaf | drought | 16.46 | HC |
| SRR1761530 | leaf | control | 18.20 | HC |
| SRR504365 | leaf | wt | 33.98 | HC |
| SRR6417967 | leaf | H2O_control | 9.25 | HC |
| SRR6417968 | leaf | H2O_control | 7.36 | HC |
| SRR6417969 | leaf | H2O_control | 8.69 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 26.92 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 21.04 | HC |
| SRR8611900 | leaf | Non-inoculated | 32.96 | HC |
| SRR8611901 | leaf | Non-inoculated | 31.42 | HC |
| SRR8611902 | leaf | Non-inoculated | 34.08 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 25.04 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 29.33 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 28.21 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 42.23 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 45.81 | HC |
| SRR1213692 | leaf | wt | 20.93 | HC |
| SRR1213693 | leaf | wt | 18.12 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 29.68 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 22.46 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 30.97 | HC |
| SRR6502088 | leaf | control | 29.78 | HC |
| SRR6502089 | leaf | control | 29.55 | HC |
| SRR6502090 | leaf | control | 24.11 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 27.31 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 35.23 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 28.35 | HC |
| SRR6502100 | leaf | control | 34.72 | HC |
| SRR6502101 | leaf | control | 23.28 | HC |
| SRR6502102 | leaf | control | 37.17 | HC |
| SRR5856927 | leaf | control | 88.70 | HC |
| SRR5856928 | leaf | control | 73.78 | HC |
| SRR5856929 | leaf | control | 98.46 | HC |
| SRR5856930 | leaf | salt | 92.03 | HC |
| SRR5856931 | leaf | salt | 73.12 | HC |
| SRR5856932 | leaf | salt | 84.41 | HC |
| SRR5856933 | leaf | control | 44.10 | HC |
| SRR5856934 | leaf | control | 62.05 | HC |
| SRR5856935 | leaf | control | 58.83 | HC |
| SRR5856936 | leaf | salt | 63.96 | HC |
| SRR5856937 | leaf | salt | 76.57 | HC |
| SRR5856938 | leaf | salt | 74.82 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 35.49 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 32.51 | HC |
| SRR6168973 | leaf | none (control) | 13.76 | HC |
| SRR6168974 | leaf | none (control) | 18.59 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 11.04 | HC |
| SRR6168979 | leaf | none (control) | 10.26 | HC |
| SRR6168980 | leaf | none (control) | 33.11 | HC |
| SRR6168981 | leaf | none (control) | 17.98 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 12.06 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 35.98 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 11.34 | HC |
| SRR8582888 | panicle | AM | 33.48 | HC |
| SRR8582889 | panicle | AM | 32.64 | HC |
| SRR8582890 | panicle | AM | 41.64 | HC |
| SRR8582893 | panicle | PM | 31.55 | HC |
| SRR4947496 | root | control | 279.83 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 12.86 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 16.03 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 13.29 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 11.04 | HC |
| SRR5126147 | root | "mock,1_day" | 61.88 | HC |
| SRR5126148 | root | "mock,1_day" | 59.16 | HC |
| SRR5126149 | root | "mock,1_day" | 98.83 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 78.58 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 59.51 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 23.36 | HC |
| SRR5126153 | root | "mock,7_days" | 97.75 | HC |
| SRR5126155 | root | "mock,7_days" | 107.80 | HC |
| SRR5126157 | root | "mock,7_days" | 161.01 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 38.62 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 30.15 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 35.08 | HC |
| SRR5126165 | root | "mock,14_days" | 86.29 | HC |
| SRR5126167 | root | "mock,14_days" | 91.19 | HC |
| SRR5126169 | root | "mock,14_days" | 100.12 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 24.85 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 48.61 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 30.73 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 92.68 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 30.45 | HC |
| SRR1213694 | root | wt | 46.50 | HC |
| SRR1213695 | root | wt | 22.55 | HC |
| SRR4947478 | root | control | 263.44 | HC |
| SRR4947479 | root | control | 246.77 | HC |
| SRR4947480 | root | control | 282.00 | HC |
| SRR4947481 | root | control | 298.82 | HC |
| SRR4947482 | root | Al | 335.70 | HC |
| SRR4947483 | root | Al | 233.47 | HC |
| SRR4947484 | root | Al | 211.11 | HC |
| SRR4947485 | root | Al | 288.66 | HC |
| SRR4947487 | root | control | 242.03 | HC |
| SRR4947488 | root | control | 241.13 | HC |
| SRR4947489 | root | control | 180.52 | HC |
| SRR4947490 | root | Al | 275.52 | HC |
| SRR4947491 | root | Al | 136.27 | HC |
| SRR4947492 | root | Al | 209.32 | HC |
| SRR4947493 | root | Al | 232.33 | HC |
| SRR4947494 | root | control | 363.28 | HC |
| SRR4947497 | root | control | 155.74 | HC |
| SRR4947498 | root | Al | 112.19 | HC |
| SRR4947499 | root | Al | 114.57 | HC |
| SRR4947500 | root | Al | 186.43 | HC |
| SRR4947501 | root | Al | 58.01 | HC |
| SRR4947502 | root | control | 124.29 | HC |
| SRR4947503 | root | control | 255.90 | HC |
| SRR4947504 | root | control | 235.18 | HC |
| SRR4947505 | root | control | 223.08 | HC |
| SRR4947506 | root | Al | 289.31 | HC |
| SRR4947507 | root | Al | 36.42 | HC |
| SRR4947508 | root | Al | 241.01 | HC |
| SRR4947509 | root | Al | 349.56 | HC |
| SRR6502091 | root | 100 mM NaCl | 76.52 | HC |
| SRR6502092 | root | 100 mM NaCl | 44.72 | HC |
| SRR6502093 | root | 100 mM NaCl | 86.09 | HC |
| SRR6502094 | root | control | 109.38 | HC |
| SRR6502095 | root | control | 91.94 | HC |
| SRR6502096 | root | control | 142.96 | HC |
| SRR6502103 | root | 100 mM NaCl | 86.95 | HC |
| SRR6502104 | root | 100 mM NaCl | 91.21 | HC |
| SRR6502105 | root | 100 mM NaCl | 47.78 | HC |
| SRR6502106 | root | control | 87.64 | HC |
| SRR6502107 | root | control | 147.38 | HC |
| SRR6502108 | root | control | 97.01 | HC |
| SRR1740434 | root_differentiation_zone | wt | 21.01 | HC |
| SRR1740435 | root_differentiation_zone | wt | 70.62 | HC |
| SRR1740436 | root_differentiation_zone | wt | 84.50 | HC |
| SRR1740431 | root_elongation_zone | wt | 16.10 | HC |
| SRR1740432 | root_elongation_zone | wt | 11.21 | HC |
| SRR1740433 | root_elongation_zone | wt | 10.19 | HC |
| SRR6441554 | seedling | wild_type | 27.92 | HC |
| SRR6441555 | seedling | wild_type | 35.53 | HC |
| SRR2154086 | seedling | wt | 54.41 | HC |
| SRR2154082 | seedling | wt | 67.82 | HC |
| SRR2154083 | seedling | wt | 45.39 | HC |
| SRR2154084 | seedling | wt | 69.13 | HC |
| SRR2154085 | seedling | wt | 62.78 | HC |
| SRR2154087 | seedling | wt | 42.44 | HC |
| SRR3098743 | seedling | wt | 21.01 | HC |
| SRR2857719 | seedling | drought_stress_0h | 76.56 | HC |
| SRR2857720 | seedling | drought_stress_1h | 80.11 | HC |
| SRR2857721 | seedling | drought_stress_6h | 41.75 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 47.18 | HC |
| SRR1944583 | seedling | no_treatment | 45.53 | HC |
| SRR358791 | seedling | wt | 44.61 | HC |
| SRR358792 | seedling | wt | 35.99 | HC |
| SRR358793 | seedling | wt | 30.18 | HC |
| SRR358794 | seedling | wt | 15.96 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 9.12 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.64 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.50 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.87 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 18.50 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 21.39 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 19.77 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 17.78 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 35.19 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 41.55 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 40.28 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 44.48 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 23.08 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 14.24 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 56.77 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 33.89 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 33.42 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 36.51 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 31.13 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 28.50 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 33.46 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 35.75 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 30.88 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 37.97 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 38.04 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 39.50 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 38.04 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 35.29 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 35.89 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 14.57 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 27.43 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 26.00 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 23.48 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 34.08 | HC |