Chr:
Chr1
Start:
804083
End:
809495
Strand:
-
Ref_name:
LOC9271150
Sequence
(XR_003240226.1):
CACUUACUUCAUCACCUCCUAAUGCAAUCUGACAUUCCAAACAAUUAUGGCAUGAGCAAAAGUAUGACAAUCACUGCCAGCACUAAUAUGAUGUUUGGGAUUAUUAAAUAGUGUGCUCACCAUAUCUUGCAAAUAUAUCAUGUCCAUGCUGCAGCUUCUAGUAGAUGCAAAAAUGAUCUUCCUGUGAGUAGCUAACUGGAGCUGCCUAAAUCCACAGAAGUAUACAGCGGAACAAAUUCAGCCAGUGAAUCCAUCACGGUGAGGUGGUUGCUGCUGGUGCUGAAACUGAAAGCACAGGGGAUGCGCGCCUGCGUAAGCCGCCACCCGUUUGACACGAUGAUGCAUCAUGCUGGCGCUGCGCGGCUGGACCAGAUCACGUCAAUUGACAACAUGAGGCUCUUUAUGGACAAUUUCACAAACACAUUGCAUACAAGACGAGAUGCUGGAGAUAAAACGACAGCUUAGCGUGGUGAUAGGGGUUACCAGCGUCUAGCGCUCCAACCGUUCGGGACGGGGUUUGCCUUGCUGAGGAUGAUGGCGGCGGCAGCGGCGGCGCGGAGGCCGGCCGUCACGCCGGCGUCACGGCAGACGACGGAGCCGAGCAGCGCGAACGACCCGGCCGUCGUGUUCAGCCGGUCGCGCUUCACGAUGUUGUCCUUGAGGAUGGGGACGCCGUGGAGCGGCCCGCAGUAGCUGUGGCCAGAGGCGUGCUCGGUGUCGGCGCGCGCCGGCUGCUGGAGCGCGUCGGAGUUGACCUCGAUCUCGAUGACGGCGUGGAGAAGCGCGUUGAGGCGGGUGAUCUUGCCCUGGGGACGAGCAGACAGGGCUGAGGCACCGCCGCACCGACGACGUCGUCGGCCGUGGCGGGCGCCGGGAUCUGCUGUGGAGAAGCUGCGAUGACUGGAGAGAUUGGAUCGGUAUGUUCAGGAGUAAGGAGAUGGGUUUUGUUUUCUCUAUUAGGAUCAUAACUGCUUCCGAUAGUGGAGAAGAAAACCCGGCAAAUUGAGGGAGGAAAAAAGCGUACAAACACAAAAAUUUGGAGCAAACCCGCGGCAAAAUCAGUUUUAUGUGUUUCUCUUUUUCAGGCACAAUAGAACUAGAUUGAUGGAAAUCUGACAGGGUGGACCUAUAAAGAAAUAAAUUAGUAGUAGUUUUAUUUGGAAUUCUAUAAAGUUUUAAUAAUUUUGUACUCACCUUAUCAAUAAAUUAGUUUAAUCCAUGUUAAUGAAACAAAAUCUUCCCCUCUAUAACAAAUAAUAGCCUAUUACAUUUCAUAUACAAUGUUAUUUAUAAUGUGCGGAAAAUAAAAUUUUACGGAAAAGUAUAUGUAUCUUUUUUAUGUAAUAUGAUGAAUGAGAAUGGAAGGAGGCAAAGAGUGAUAAUAUCUUGUUAUUCCUUACUGCAAUGACAACGGCUGGCGACGCUCUCUAGGCACAACGGCAUGUAGAGGAUACUUGUCCAUAAGUAUGGGAUGCACAAUUAACUUCAUAUUGGCAGAAAUUUUAUUAAUUUUCUAAAGAAUUGAGAGGGUACUUUGACAAUGAAAUUUAAGUCAAAAUAUGCGAACCACAAGCAAGCUUCACUGAACUUGUGAAAAUCAUCUUCCAUCGAAUGCUACCUUUGUGUUUCGCACGUUUGUAGCCACGUGGCUUCUCUAGCUUACACGUAGGACGCUGAAGACAUAACACUAACUUAAAAGGACCGGUGUCUAAUAGAGACGGCUCUGGUUGGUUGUGAAAAGUAUAGGAAGUAAAAUAGUGAUAAGAUGUUUGGACUUGCACUUCAGGCUAUUUAUGAAGGUAGUCAGACUCGGAUAAACCAAUAGACGAUAAACUAAUUGAGAUAGCAUGGUAGAGCCAAAUAACAUAGAAUUAAAUUAAUGGAUGUGUUUACCAUUUACUACGUUCGAUCUAGAAAAUAUAUAAUGUUUUAGAAAAGUUUCUAUUAAAUUAUUAUAACUUUAAAUAAUAUCAACGAAAAUGAUAAGUUUGUGCAUAUAGCAAUGAUACAUGUACAUUUGUUUUGAAAGUAAUUUCUUAAUCUCAUAAACUUAUUACAUUUCUAUAAAUUUAUAUUUGGUUAAAGAAUUGUGAUCAAACUUCCAUCUCAAAAACAGUAAUGUAGAAGUAAAUCUCAUGUUACAUAUAUAAACAAAAUUAAAAUUACCUUAAUUUAAUACUUACAAGUGGACCAACUUUUUUAAAUUAUGGCCUCUCAUAGUUUUUAGACAAAGAAAUACCGUGCUAUUUUCAUGCGCAAUUUACAUAAAAAUACUUCCCGCCAAUCUCGACUUUCCGUCUAGAGACUGCCGCCAAAAUUUCACUUGUAACGAACCGGCUAAUUUAUCUCCACAUCUUCAGUUCACGAUAUAAUAAGACCCAACGCCCCCUACCCCAUCACCUCCUUAUUUCCAGGAGGAACCCAACAUCCCACGACUCAUCACCCGAGCAACCGAGGUCUGUGCUUCCCAUCUGCUGGCUGCUGCAAUCUCGUGUUAUCAACUACUCAGAUCCCGGCGACAAGAAAGGGGAGUCGGCUCGUCGCAGCCCCUACGGUGGCAGGUGGGCAGGGGAGAAAGGGGAGUUUCCGUCCGUGGAGCGGCAUCGAUCUCGUCAGGUGAGCCGCGUGAGCGAUGUCGAGGGACUACAGACGCCGGCGGCUUCGGAGGAGGGGGCGAGAAGGAGAUGCAAGAUCGAGACACAUCUGAUUGCUGGAGAGUCCAAACACAUCUGAUCACUGCAUCCUUCUUGUGUACGCAUGGAGUGGAUGGCUUGUUCUCUAUCACACAUAUGCACAUCAUGUGUUUGAUGAAAAGCUUCACUGUGUACUGUUGCAUGCCAACUCCGUAAAAGCAUAAUUUUGUCCUUAGACAGAUUAUUGAUGUUAUCUUCACAUCUCUCCAUACUUUUUCUGAUCACGCGAAAUUGCAAAAUUCUUAUGCCAACAUGAUCAUUCAUAAAAAAAAAAACCUAAAUCUGUGAAUUAGUAGUGCUUGAUUGCUUUCAGUUUCAUGAACACAUUGGGUGAUCACCAUCAACAGAACAACUUUUUAUGCAGCUAGCCAGUAUUUUCAAGGGGAUUAAGUUGUUGACUCUUUCAAGCAGGCAGUAUAUAUGGACCGAUUUGUUCGAUAAAAUCCAGUUAUGCCUGAUCAUUACUUAAAGGUCACAACUCACAACAGAGGGCCAAAAGAGCAAAACCAAUAUAAUACAAGUUGACUUCUUAUUGCAAACAAAUGUCAACUUGUUUGAUUAAAACACUAGCUUUGAACAAUAUUUUGGAUCAGCAUGUUGUGGUUUGUGCAUGGAAGUUCAAAAUAAGAUGUGCUAUGUCUAAACUUUGGGAACGAAAUCUUAAGGUACUAUUCUGCAUGUCAUCUAUUUUCUUCCAUGCCUUGUUAAGUAAAUCAAACAUAUUAUUGUCUAAUGAAGUUCUGAUACAAGAAACUAACACUGCAGCUUUAAGUGUAGAAAAUGAGGCAAAGCAACUCUAUAUCACUAUGUGUGCCUGCUUACGAGAUUGUAAAGAUGGAACCACAGGAGAAGAACUCACAGAGCACAUCACUUGGUGCAAGGUUUGCAAGAAUAUAUUUAAGAUGAAUGGGACACUACCACACUGGGGUUGCAAUGGUAUCAAAGAUUCAGAUGAUCAGUGGCUGAAUUCUGACAGUUGAAUGCCCACUUCAAGAUCUAAGAAAGAAGCGAAGGAAUUUGCGAAGAUGAUAUAUGAAUAGAUGUAUUGCACAAUUAUCUAGCAGCUUGCUGCUAAAAUGUGUAUUUUUUUCUUUUUAAAAGAUAUGCCUAUAAAUUUCUUUGUUACAAGAUGUAAACAAUAAUUCUGUAAAUUUCCUUAUUGCAAUGCAAUAUAUUAUGAUCAUUUCACUUCUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.22%
ME_num:
MEP:
49.59%
HE_num:
HEP:
23.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.85
Avg Expression:
19.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.02030292413987 | 0.00206730920328102 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.33254688256936 | 0.00256937633594521 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.56908180257044 | 0.0239961672229193 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.15677801347265 | 6.39916164323805e-12 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.15686446735525 | 7.26605529729121e-12 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.15697742848374 | 6.54716676331303e-12 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.21102168716928 | 0.0131512262297791 |
| 8 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.14162092228853 | 0.0186918834034398 |