| SRR358796 | callus | wt | 9.06 | MC |
| SRR358797 | callus | wt | 7.69 | MC |
| SRR358798 | callus | wt | 7.79 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.30 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.16 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.16 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.81 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR2338867 | endosprem | control | 0.89 | MC |
| SRR2338868 | endosprem | high_temperature | 0.70 | MC |
| SRR2338869 | endosprem | high_temperature | 0.54 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.36 | MC |
| SRR4457248 | flag_leaf | DAH44 | 6.33 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.36 | MC |
| SRR8240824 | leaf | wild_type | 1.34 | MC |
| SRR8240825 | leaf | wild_type | 1.47 | MC |
| SRR8240826 | leaf | wild_type | 1.37 | MC |
| SRR8240818 | leaf | wild_type | 1.90 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.49 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.83 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.79 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.94 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.87 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.61 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.79 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.50 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.64 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.38 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.06 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.81 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.77 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.62 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.40 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.84 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.24 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.60 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.07 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.55 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.21 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.22 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.52 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.35 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.05 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.28 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.90 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.99 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.98 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.95 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.81 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.21 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.74 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.58 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.63 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.58 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.63 | MC |
| SRR1761528 | leaf | drought | 2.58 | MC |
| SRR1761529 | leaf | drought | 2.63 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.83 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.65 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.99 | MC |
| SRR6417967 | leaf | H2O_control | 2.17 | MC |
| SRR6417968 | leaf | H2O_control | 1.63 | MC |
| SRR6417969 | leaf | H2O_control | 2.61 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.35 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.73 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.84 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.36 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.17 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.09 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.09 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.70 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.71 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.59 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.63 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502101 | leaf | control | 4.11 | MC |
| SRR5856927 | leaf | control | 0.75 | MC |
| SRR5856928 | leaf | control | 0.55 | MC |
| SRR5856929 | leaf | control | 0.48 | MC |
| SRR5856930 | leaf | salt | 0.20 | MC |
| SRR5856931 | leaf | salt | 0.24 | MC |
| SRR5856932 | leaf | salt | 0.31 | MC |
| SRR5856933 | leaf | control | 0.58 | MC |
| SRR5856934 | leaf | control | 0.76 | MC |
| SRR5856935 | leaf | control | 0.66 | MC |
| SRR5856936 | leaf | salt | 0.29 | MC |
| SRR5856937 | leaf | salt | 0.20 | MC |
| SRR5856938 | leaf | salt | 0.20 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.04 | MC |
| SRR6168973 | leaf | none (control) | 0.45 | MC |
| SRR6168975 | leaf | none (control) | 0.55 | MC |
| SRR6168979 | leaf | none (control) | 0.28 | MC |
| SRR8582888 | panicle | AM | 1.29 | MC |
| SRR8582889 | panicle | AM | 0.96 | MC |
| SRR8582890 | panicle | AM | 1.54 | MC |
| SRR8582891 | panicle | PM | 4.55 | MC |
| SRR8582892 | panicle | PM | 5.28 | MC |
| SRR8582893 | panicle | PM | 4.67 | MC |
| SRR5110429 | panicle | Dawn | 1.25 | MC |
| SRR5110430 | panicle | Dawn | 1.27 | MC |
| SRR5110431 | panicle | Dawn | 1.15 | MC |
| SRR5110432 | panicle | Dawn | 1.22 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.10 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.63 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.70 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.76 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.14 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.55 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.00 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.49 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.97 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.72 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.35 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.76 | MC |
| SRR5110445 | panicle | Dusk | 1.43 | MC |
| SRR5110446 | panicle | Dusk | 1.83 | MC |
| SRR5110447 | panicle | Dusk | 1.35 | MC |
| SRR5110448 | panicle | Dusk | 1.74 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.54 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.86 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.25 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.55 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.15 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.77 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.09 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.67 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.41 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.74 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.14 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.78 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.07 | MC |
| SRR1633182 | panicle | WT | 2.29 | MC |
| SRR1633185 | panicle | WT | 5.80 | MC |
| SRR5126147 | root | "mock,1_day" | 2.54 | MC |
| SRR5126148 | root | "mock,1_day" | 2.11 | MC |
| SRR5126149 | root | "mock,1_day" | 3.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.43 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.55 | MC |
| SRR5126153 | root | "mock,7_days" | 3.30 | MC |
| SRR5126155 | root | "mock,7_days" | 3.97 | MC |
| SRR5126165 | root | "mock,14_days" | 4.52 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.24 | MC |
| SRR4947482 | root | Al | 0.58 | MC |
| SRR4947487 | root | control | 0.47 | MC |
| SRR4947490 | root | Al | 0.63 | MC |
| SRR4947491 | root | Al | 0.55 | MC |
| SRR4947498 | root | Al | 0.54 | MC |
| SRR4947499 | root | Al | 0.45 | MC |
| SRR4947503 | root | control | 0.54 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.40 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502106 | root | control | 0.78 | MC |
| SRR6502107 | root | control | 0.63 | MC |
| SRR6502108 | root | control | 0.90 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.68 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.86 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.13 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.71 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.72 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.05 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.37 | MC |
| SRR6441554 | seedling | wild_type | 1.90 | MC |
| SRR6441555 | seedling | wild_type | 2.18 | MC |
| SRR2154082 | seedling | wt | 1.33 | MC |
| SRR2154083 | seedling | wt | 0.34 | MC |
| SRR2154084 | seedling | wt | 0.78 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.99 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.66 | MC |
| SRR1944583 | seedling | no_treatment | 3.00 | MC |
| SRR358791 | seedling | wt | 5.65 | MC |
| SRR358792 | seedling | wt | 5.29 | MC |
| SRR358793 | seedling | wt | 2.64 | MC |
| SRR358794 | seedling | wt | 3.30 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.59 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.50 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.55 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.60 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.14 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.28 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.60 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.72 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.75 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.20 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.22 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.65 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.44 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.68 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.98 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.74 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.87 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.57 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.54 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.18 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.96 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.76 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.20 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.75 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.96 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.96 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.10 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.40 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.54 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.18 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.77 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.99 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.21 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.83 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.64 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.81 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.54 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.00 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.94 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.55 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.12 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.84 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.72 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.03 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.82 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.05 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.59 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |