Chr:
Chr1
Start:
808993
End:
810958
Strand:
+
Ref_name:
LOC4326113
Sequence
(XR_003240227.1):
GAUGCAUCAUCGUGUCAAACGGGUGGCGGCUUACGCAGGCGCGCAUCCCCUGUGCUUUCAGUUUCAGCACCAGCAGCAACCACCUCACCGUGAUGGAUUCACUGGCUGAAUUUGUUCCUGCCAAUCAACGGCAGCUAAUCAUAGCAGCUCCAGUUAGCUACUCACAGGAAGAUCAUUUUUGCAUCUACUAGAAGCUGCAGCAUGGACAUGAUAUAUUUGCAAGAUAUGAUUGCAUUAGGAGGUGAUGAAGUAAGUGUUUCAAACAUGCAAAUUCAUGUCAUCAUCCACCAGAACUGCCCCCUCGCUACUUUCUCUACCGUAUGUACUAGUAAUUAUUAUAGUUAUACUCUACUUUAAAUUUGAUUUCAUGCUGGAACUUUCUUAGGAGUAAUAUGCAACUUGUGACCUGUUUUUGCUAGCAUUAUUGUUGUUUUGAAUGAAGAAUUGAUGGUUGCAAUUGGCAGAUUUCUGCUAACCCGUGAAUCAGUAAUUAAGUUAUGAAUGGAUGCAAAUUCUGCUAAAUACAUAGCUAUUUUUAUUCAGGAUAGAGCUUCGAGCUACGACAUGAAUAAUACUCAUGUACAUGAAUGUACAUGUUAAUACAUACAUUAGGAUAAAUAUAAUAAAGAACUGCAUGAUUGGGUAGUGUGAACUAGCCUAGCAAAAUGCUUGUGUUUCCUAUUUUGUCCUAAGAGGAGUUCUGAUUUCAGUUCUGUUUUUUAAAUCGUUUGGUGGAAAAUCUGUCAGUUUUUUUAUAAAAAGAUAUGUGGAAUGAUGUAGACACUCCCAGUCUUAUAUACGGUCCUCAUCAAGGUUGUUCAAGUUGCUUAGGAUUUUAUUCAUUCAUCCUUAUGUUUUUUUUUGUCUAGGAGCAACAUCUUUGUACCAUGAUCUAAGCUGUCAACGUAGUAUGAUCAGCCAUCUGUGGCCUUUCAAUUAUUCUAAUUAUGCAUGUGACAAGAUUGUCAUUUUUUUUAUUCAAUUCAGCGAUCUCCAAGGUUGCAUGUAAGCUUUGUCCACUAGAUCAUGGAUCCAACACAAGCCUCCAGGUGCUGUUAACCUCAUCUCCACAUAUUUAGCAACAAACUUUGUGUGAGUUAAAGAUCAAAUUGUACAGUCAAACAUAUUUACUUGUGGUUAUUAAAUUUUUAACACACCUAAAUUACCUUUACUUUCUAUUUCAACACAGAAAACUAUGGAUUUAAAUGCUAGUAAACAGCCAAUGCUUUUCUACAGACCAUUUAUGAGCAUUUUUGGUAGAAUAAAGGAGUUUUCCGAUCCAAUGGCCAUUUAAGAAUUGUGUGAAUUAGUGAUUAUUACAGCAGAAGUGCGUGGUCAUUGAGUAUGUUUAUUAAAAUUCUUUGAAGUGGUGGAAUUUAAUUACACUGCCACCACAUAUUUGUCACUGUUGUUGCUAUGGAAAGUACAAAUAUUCAUCUAUUUGACAUCAACUGUUUAUUUUCAGGCCCAUUCUUUGGUUGUCAAGGUGGUAAAUACAAGUAAAGGCUUGUUUUGAUAACCUCUCUUGCAGGAUUUAUUUUCAAUUUGUUCAAGGCUGUUGGUAUUGCACCGAGGAAAUUUAUUACCUUCUUUUUUUUUCACCUUGAAAUGUCAUAUUGAUAACCCAAGUAAUCAUGUCAUCAACUCAUAUGUGAUAUUUGGAGUGCCUUGGAGUGUAUUGCUUUGAAAGCAAUUUGAAUAUCAACAGAGAUUGUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.61%
ME_num:
MEP:
37.2%
HE_num:
HEP:
36.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.75
Avg Expression:
13.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -5.66790878991718 | 0.0058908771509493 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.15477491855905 | 0.0307385919743031 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.43148974783898 | 0.0298103927425154 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | -1.19987064245829 | 0.041973315720004 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.43648209969755 | 0.00121666744507435 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.43655387754942 | 0.00124376630103504 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.43668804269889 | 0.00122142343278054 |