| SRR3745125 | anther | wt | 1.16 | MC |
| SRR6320473 | carpel | wt | 2.22 | MC |
| SRR5560727 | caryopsis | wild_type | 4.35 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.78 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.41 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.22 | MC |
| SRR4947495 | root | control | 2.59 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.40 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.72 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.18 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.37 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.19 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.06 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.30 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.33 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.68 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.40 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.35 | MC |
| SRR2338867 | endosprem | control | 1.37 | MC |
| SRR2338868 | endosprem | high_temperature | 2.10 | MC |
| SRR2338869 | endosprem | high_temperature | 1.87 | MC |
| SRR976168 | flag_leaf | wild_type | 1.35 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.49 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.59 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.42 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.67 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.01 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.78 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.39 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.82 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.82 | MC |
| SRR1761529 | leaf | drought | 3.82 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.76 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.08 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.34 | MC |
| SRR6417967 | leaf | H2O_control | 1.79 | MC |
| SRR6417968 | leaf | H2O_control | 2.07 | MC |
| SRR6417969 | leaf | H2O_control | 2.69 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.66 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.95 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.30 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.25 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.72 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.57 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.29 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.15 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.29 | MC |
| SRR6502090 | leaf | control | 0.32 | MC |
| SRR6502100 | leaf | control | 3.73 | MC |
| SRR6502101 | leaf | control | 3.80 | MC |
| SRR5856927 | leaf | control | 1.36 | MC |
| SRR5856928 | leaf | control | 1.26 | MC |
| SRR5856929 | leaf | control | 1.70 | MC |
| SRR5856930 | leaf | salt | 0.57 | MC |
| SRR5856931 | leaf | salt | 0.46 | MC |
| SRR5856932 | leaf | salt | 0.53 | MC |
| SRR5856933 | leaf | control | 1.11 | MC |
| SRR5856934 | leaf | control | 0.99 | MC |
| SRR5856935 | leaf | control | 1.92 | MC |
| SRR5856936 | leaf | salt | 0.70 | MC |
| SRR5856937 | leaf | salt | 0.89 | MC |
| SRR5856938 | leaf | salt | 0.93 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.01 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.61 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.79 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.78 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.32 | MC |
| SRR6168973 | leaf | none (control) | 0.76 | MC |
| SRR6168974 | leaf | none (control) | 0.38 | MC |
| SRR6168975 | leaf | none (control) | 1.12 | MC |
| SRR8582888 | panicle | AM | 1.75 | MC |
| SRR8582889 | panicle | AM | 0.55 | MC |
| SRR8582890 | panicle | AM | 2.14 | MC |
| SRR8582893 | panicle | PM | 3.23 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.19 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.26 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.64 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.27 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.36 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.35 | MC |
| SRR5110445 | panicle | Dusk | 3.81 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.48 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.23 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.37 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.30 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.87 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.46 | MC |
| SRR1633182 | panicle | WT | 2.67 | MC |
| SRR5126147 | root | "mock,1_day" | 3.49 | MC |
| SRR5126148 | root | "mock,1_day" | 3.20 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.57 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.71 | MC |
| SRR4947478 | root | control | 1.95 | MC |
| SRR4947479 | root | control | 2.94 | MC |
| SRR4947482 | root | Al | 1.46 | MC |
| SRR4947483 | root | Al | 2.74 | MC |
| SRR4947487 | root | control | 2.71 | MC |
| SRR4947490 | root | Al | 3.31 | MC |
| SRR4947491 | root | Al | 3.42 | MC |
| SRR4947494 | root | control | 2.41 | MC |
| SRR4947498 | root | Al | 3.62 | MC |
| SRR4947499 | root | Al | 2.80 | MC |
| SRR4947502 | root | control | 3.75 | MC |
| SRR4947503 | root | control | 3.91 | MC |
| SRR4947506 | root | Al | 1.79 | MC |
| SRR4947507 | root | Al | 4.02 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502095 | root | control | 0.45 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.23 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.62 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.30 | MC |
| SRR6502106 | root | control | 1.28 | MC |
| SRR6502107 | root | control | 1.93 | MC |
| SRR6502108 | root | control | 3.54 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.38 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.80 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.27 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.88 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.03 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.13 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.45 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.42 | MC |
| SRR6441554 | seedling | wild_type | 1.12 | MC |
| SRR6441555 | seedling | wild_type | 1.75 | MC |
| SRR2154083 | seedling | wt | 3.39 | MC |
| SRR2154084 | seedling | wt | 3.17 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.18 | MC |
| SRR1944583 | seedling | no_treatment | 2.32 | MC |
| SRR358793 | seedling | wt | 1.12 | MC |
| SRR358794 | seedling | wt | 2.20 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.68 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.32 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.67 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.24 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.55 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.52 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.41 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.35 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.26 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.89 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.21 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.96 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.14 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.01 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.76 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.16 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.94 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.02 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.85 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.38 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.73 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.71 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.20 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.33 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.62 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.31 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.31 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.45 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.30 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.57 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.98 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.89 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.96 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.66 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.49 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.51 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.20 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.20 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.87 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.81 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.04 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.15 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.87 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.29 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.66 | MC |