Chr:
Chr1
Start:
537031
End:
538361
Strand:
-
Ref_name:
LOC112936901
Sequence
(XR_003239380.1):
GACCUCUGUGGAGGAACUCCUCCUCCUUGGCCUUGUAGAAGUGGUUCACCUUGUUCAGCUGCGCGUCCAGCCUCGCGAAGAACUCCCUCGCCGCCGUCGCCGCCGUCGUCUCCAUCUCCGGCGUCACCUCCGUCUCCAUGAUCAGCAUUAUUGGAGCCAAAGAAGGCCGCCGGGAGCUUGUGCAACAGGAGCCUGCAGUGAGACAAAUUAUAACUUGAUGGCGCCGCAACUGAUUGCUGCUGCUGAUGAUGAUCAUGAGGUGUUGAGGUGGUAAUUAUGGUCCCUUGGGGAGAAUAAUCAUGCUGCAUCCUCUUAAGAUCUUUCUUGAGCAAGCUAUAGUCCACAAAGGCAUGCUUCCACUCAGGGACAAGCUGCCCUUCAAAUUGCUUCGAGAACUUCACCAUGGUUAAUUCUAUAUGAUCAACUUAAUUAACGAGCAAUACGCAUGCAGCUGCUAAUUAAUUAUAUUGUUGUGUGCUGUGCUGUGCAGGGGGAGCCAUGGAGGUUGUUAUAUAGCAGCUAGCUGAUCUGAUGGGAUGGAAUGGAAUAAUAAUCUCUCUCUCUCUCUAUCUUUGCAGGUGUUGCGAGACAACGCAUUAUAUUCUCAGAUAUACUACACUACGCGUACGUGUUAUAUCUAGGCCAGCUAGGCUAUAUAUCUAGCUUAGCUUAAAGCUUGUUGGUGAUGGUUGUGCUGGAUUGGAUUCCAGGAGAGAAGAGAGACAGAAUCAAGAGAAAUAGUACUCCAUAUAGAUCAAGGUGAAGAGAAGAGUGCUCCAGAGAGGACAGAGAGAAAUCUAGAGAGAAGCUAGCUAGAGGGAUGCAUAUGGAGAGGAAGAAGAGAAACUAGUGCAUAUAUACAUAUAUGCAAGAUGAAAGCAUAUGCAUCUGAAUGUGAGGAUAGUGAUCAAGUGGAGACGGAUGAGAUUAGCAGCUAGUGGGUGGGUCCCCUCCAUAUAUAUAUGCAUGCCCACAUAAUUAAGCAUGGUGCUCGAUCAGUAAAUCAGUUGGUCCAGAUCGACGCCAUUAUUUGGGAAUGCAUAGGUGUAGAGCAUGCAUCCACUAUUCUCCAUAUGUCAACAAGCACGAUGACAUGCAUGCAUGAAAAAGUGUGCGUAUAUCUAAUGAUAUGAUCGGGUUUCUACUUUUCCAUUAUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.66%
ME_num:
MEP:
44.11%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.87
Avg Expression:
3.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.65087254524546 | 0.0110713043592443 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.04600575418754 | 0.00524481034503186 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -4.20695232944968 | 0.0286054224645354 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -3.37512516478723 | 0.0151653445260642 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.79244792651152 | 0.0160094592637244 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.27269740654999 | 0.022849795616561 |