| SRR4457249 | 2nd_leaf | DAH4 | 1.43 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.12 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.33 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.83 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.67 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.93 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.30 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.57 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.88 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.75 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.97 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.08 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.20 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.83 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.01 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.78 | MC |
| SRR5560727 | caryopsis | wild_type | 0.94 | MC |
| SRR5560728 | caryopsis | wild_type | 1.47 | MC |
| SRR5560729 | caryopsis | wild_type | 1.43 | MC |
| SRR4947495 | root | control | 3.70 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.33 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.05 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.75 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR2338868 | endosprem | high_temperature | 0.79 | MC |
| SRR976168 | flag_leaf | wild_type | 0.72 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.08 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.60 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.35 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.39 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.84 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.81 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.50 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.69 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.57 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.35 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.14 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.11 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.96 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.97 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.18 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.09 | MC |
| SRR1213691 | flower | wt | 1.03 | MC |
| SRR8060835 | leaf | wild_type | 0.52 | MC |
| SRR8060836 | leaf | wild_type | 0.48 | MC |
| SRR8060837 | leaf | wild_type | 0.46 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.42 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.84 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.19 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.38 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.34 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.00 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.58 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.86 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.07 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.86 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.07 | MC |
| SRR1761530 | leaf | control | 0.86 | MC |
| SRR1761531 | leaf | control | 1.07 | MC |
| SRR504365 | leaf | wt | 0.55 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.52 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR6417968 | leaf | H2O_control | 0.81 | MC |
| SRR6417969 | leaf | H2O_control | 0.38 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.48 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.76 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.29 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.46 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.29 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.55 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.45 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR1213693 | leaf | wt | 0.88 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.54 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.38 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.09 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.49 | MC |
| SRR5856927 | leaf | control | 0.55 | MC |
| SRR5856928 | leaf | control | 0.47 | MC |
| SRR5856929 | leaf | control | 0.92 | MC |
| SRR5856931 | leaf | salt | 0.23 | MC |
| SRR5856932 | leaf | salt | 0.27 | MC |
| SRR5856933 | leaf | control | 1.07 | MC |
| SRR5856934 | leaf | control | 0.46 | MC |
| SRR5856935 | leaf | control | 0.32 | MC |
| SRR5856936 | leaf | salt | 0.38 | MC |
| SRR5856938 | leaf | salt | 0.31 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.16 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.40 | MC |
| SRR8582888 | panicle | AM | 0.50 | MC |
| SRR5110429 | panicle | Dawn | 1.44 | MC |
| SRR5110430 | panicle | Dawn | 1.64 | MC |
| SRR5110431 | panicle | Dawn | 0.62 | MC |
| SRR4947496 | root | control | 2.56 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.22 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.28 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.84 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.98 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.81 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.19 | MC |
| SRR5110445 | panicle | Dusk | 0.46 | MC |
| SRR5110446 | panicle | Dusk | 1.24 | MC |
| SRR5110447 | panicle | Dusk | 1.12 | MC |
| SRR5110448 | panicle | Dusk | 1.05 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.69 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.76 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.58 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.95 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.61 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.52 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.97 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.62 | MC |
| SRR5126147 | root | "mock,1_day" | 2.69 | MC |
| SRR5126148 | root | "mock,1_day" | 1.74 | MC |
| SRR5126149 | root | "mock,1_day" | 3.97 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.41 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.51 | MC |
| SRR5126153 | root | "mock,7_days" | 3.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.50 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.21 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.24 | MC |
| SRR5126167 | root | "mock,14_days" | 2.61 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.45 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.90 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.05 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.75 | MC |
| SRR1213694 | root | wt | 1.82 | MC |
| SRR1213695 | root | wt | 1.07 | MC |
| SRR4947478 | root | control | 4.16 | MC |
| SRR4947479 | root | control | 3.30 | MC |
| SRR4947480 | root | control | 2.71 | MC |
| SRR4947481 | root | control | 2.81 | MC |
| SRR4947482 | root | Al | 3.38 | MC |
| SRR4947483 | root | Al | 1.81 | MC |
| SRR4947484 | root | Al | 3.45 | MC |
| SRR4947485 | root | Al | 2.37 | MC |
| SRR4947487 | root | control | 4.28 | MC |
| SRR4947488 | root | control | 3.55 | MC |
| SRR4947489 | root | control | 3.38 | MC |
| SRR4947490 | root | Al | 3.21 | MC |
| SRR4947491 | root | Al | 5.14 | MC |
| SRR4947492 | root | Al | 2.82 | MC |
| SRR4947493 | root | Al | 4.03 | MC |
| SRR4947497 | root | control | 5.99 | MC |
| SRR4947499 | root | Al | 2.75 | MC |
| SRR4947500 | root | Al | 3.25 | MC |
| SRR4947503 | root | control | 3.18 | MC |
| SRR4947504 | root | control | 4.43 | MC |
| SRR4947507 | root | Al | 5.33 | MC |
| SRR4947508 | root | Al | 2.68 | MC |
| SRR4947509 | root | Al | 3.94 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.58 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.41 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.54 | MC |
| SRR6502094 | root | control | 0.57 | MC |
| SRR6502095 | root | control | 1.31 | MC |
| SRR6502096 | root | control | 1.14 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.12 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.67 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.16 | MC |
| SRR6502106 | root | control | 1.00 | MC |
| SRR6502107 | root | control | 1.04 | MC |
| SRR6502108 | root | control | 0.84 | MC |
| SRR6441554 | seedling | wild_type | 2.19 | MC |
| SRR6441555 | seedling | wild_type | 0.92 | MC |
| SRR2154086 | seedling | wt | 1.34 | MC |
| SRR2154082 | seedling | wt | 0.43 | MC |
| SRR2154083 | seedling | wt | 0.39 | MC |
| SRR2154084 | seedling | wt | 0.63 | MC |
| SRR2154085 | seedling | wt | 1.27 | MC |
| SRR2154087 | seedling | wt | 1.18 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.94 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.46 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.28 | MC |
| SRR1944583 | seedling | no_treatment | 0.40 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.54 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.33 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.37 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.40 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.47 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.32 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.14 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.10 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.63 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.31 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.82 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.78 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |