Chr:
Chr1
Start:
781183
End:
785596
Strand:
-
Ref_name:
LOC107282088
Sequence
(XR_003240164.1):
UAGCCCUAGGCCGAGCUUAGUUUCUGGUUGCAAACCGUACGGAAUCCCCUUUCCUCCCUCUCUUGCCACGAACCCUUCGCCGUCGCCGGCGAUCCCACCGACUCCCAGCCGCCUCUGCUUCCCCGGCGAUGUCUCUGCUUUGCGCUCCGCCGUCAAUGCGCGUUGCCCGGGCUAUGCGUCGCCUUCUCCCUGCGUCCUUGUGAGACCCGAGCCGCAAAUCCAGGCCCCAAGCGGGAUGCCACGCCGAGCCGCAGGAUUGACAGAACUCGGGGAGGUCUCCUGAUCCGGUGGUUGUUCGGUUCGCUGCCCCCUCCUUGCAUUGAUAAAGGAUUUUCUUGCAAGCCACUAGAUAUGGACCCAUGAAACGGACGAGGACGGCAUCUUACUGAAAUAGUACAGCGAGGAGUACUCUGCACACCGUGGUUGGAUGGAGAUAUACAUCGCAACAACUGAACAAGAUAAGGAUGAUUAGGAUGAGUUGAGGUGGGUUAUGGGCUAAAUUAUAAAGGCUUCCACAUAUCACCUCCCAUGUCUACUAAUCUAUUAUCAAAGCAACCAAAGAUCUAACUGCAGCUCCUGUUAUAUCAGAAUGUUUGAUUCCUUCGUGAGCUGAAUGCACAGAGUUGCUUUUGACGUUCACACGCCAUGCAGUUGUCGAGAACUCCAUCUUGAAAGGACCCCCAACUGACAGUCGUCUCAGCAAAGUUGAUGAAUUUUUCUGCUUUUUCCUUGAACGUUGGGCCACUGCAGGAGUCUGAGCCAGGAAUUGGAAUGGAGCCUCUGGAGACGAUCCUGCAAUCCAAUGGAAGCAAAUACAUGUAUAGCUGAGCAUGCACCAAAUAUGAGAAGUACUGUCCUGUGCCGCUAAGGCAGGAUAUUGGGCCGAAGAUAUUUUCGGCAGCAUUCUGGAGAUGGUCAAGUUCGUACGGAACUGGAGAGGUACCACUUGGUGUAAACUCUUUUGAGCAGCUUACUAUUUUUGCAGGAAUCCUCCUGUAUAAGUUACAGCCAUGGUAGUCAUCAGGCGGUAAACUGUCGACCAUGAGCUUCUGGAGAGGGCAUGGAAACGGAAGGAGAUGGAUGAUGUUGAUGACGGCCUCCUUGUAAUCUAUGGAGGUGACCUUGCAAGGCCCCAGAAUUGGGUGAUGUAGGAUGGUGUCUUGGCCAGAGCAUGCUAGCCUCGCGCAUGAAGCGCGGCAUGCUGAUGAUGUAUUGCUGGAUUCAAGCCGGUGAGGGAAACGGAUCUCUGGUCCAUCCUUGCUGCACCGGGACGGUGGACAAUGCCUGAAGAAGUCGUGGUCAUCCCAGCCUGAAGCUGUGGUGGCCAUGUAGCUGCAGGUGCCAUGGCUGAGGAAAGCAAGCAGGAGAUAUAUGGCGAGGAAUUUGCUACUCAUAUUGAUCUCUGACUCUAGGUGCAAAAGCAAUUGUGUGUGUGAUAACUGUAGUAUGUUCCCUUGAAAAAAAAAAGAGAUAACUGUAGUCUGUACUCUGUAGGUAUUCCAUAUAUGUACAUGAAGUGGAGGUGUGGAUAUAUAUAUGUGGGAUCAGGAUAUUGCAACUGUGCGCUUCAUUGUAAGCAACAAUGCGCUGUAUGUUCUCCCCGUGUUUCAUGUUACAAGUCAUUUUUUUCAUAUUAUAAGUCAAUUUGACUUU
Sequence
(XR_003240174.1):
CCUAGGCCGAGCUUAGUUUCUGGUUGCAAACCGUACGGAAUCCCCUUUCCUCCCUCUCUUGCCACGAACCCUUCGCCGUCGCCGGCGAUCCCACCGACUCCCAGCCGCCUCUGCUUCCCCGGCGAUGUCUCUGCUUUGCGCUCCGCCGUCAAUGCGCGUUGCCCGGGCUAUGCGUCGCCUUCUCCCUGCGUCCUUGUGAGACCCGAGCCGCAAAUCCAGGCCCCAAGCGGGAUGCCACGCCGAGCCGCAGGAUUGACAGAACUCGGGGAGGUCUCCUGAUCCGGUGGUUGUUCGGUUCGCUGCCCCCUCCUUGCAUUGAUAAAGGAUUUUCUUGCAAGCCACUAGAUAUGGACCCAUGAAACGGACGAGGACGGCAUCUUACUGAAAUAGUACAGCGAGGAGUACUCUGCACACCGUGGUUGGAUGGAGAUAUACAUCGCAACAACUGAACAAGAUAAGGAUGAUUAGGAUGAGUUGAGGUGGGUUAUGGGCUAAAUUAUAAAGGCUUCCACAUAUCACCUCCCAUGUCUACUAAUCUAUUAUCAAAGCAACCAAAGAUCUAACUGCAGCUCCUGUUAUAUCAGGAGUCUGAGCCAGGAAUUGGAAUGGAGCCUCUGGAGACGAUCCUGCAAUCCAAUGGAAGCAAAUACAUGUAUAGCUGAGCAUGCACCAAAUAUGAGAAGUACUGUCCUGUGCCGCUAAGGCAGGAUAUUGGGCCGAAGAUAUUUUCGGCAGCAUUCUGGAGAUGGUCAAGUUCGUACGGAACUGGAGAGGUACCACUUGGUGUAAACUCUUUUGAGCAGCUUACUAUUUUUGCAGGAAUCCUCCUGUAUAAGUUACAGCCAUGGUAGUCAUCAGGCGGUAAACUGUCGACCAUGAGCUUCUGGAGAGGGCAUGGAAACGGAAGGAGAUGGAUGAUGUUGAUGACGGCCUCCUUGUAAUCUAUGGAGGUGACCUUGCAAGGCCCCAGAAUUGGGUGAUGUAGGAUGGUGUCUUGGCCAGAGCAUGCUAGCCUCGCGCAUGAAGCGCGGCAUGCUGAUGAUGUAUUGCUGGAUUCAAGCCGGUGAGGGAAACGGAUCUCUGGUCCAUCCUUGCUGCACCGGGACGGUGGACAAUGCCUGAAGAAGUCGUGGUCAUCCCAGCCUGAAGCUGUGGUGGCCAUGUAGCUGCAGGUGCCAUGGCUGAGGAAAGCAAGCAGGAGAUAUAUGGCGAGGAAUUUGCUACUCAUAUUGAUCUCUGACUCUAGGUGCAAAAGCAAUUGUGUGUGUGAUAACUGUAGUAUGUUCCCUUGAAAAAAAAAAGAGAUAACUGUAGUCUGUACUCUGUAGGUAUUCCAUAUAUGUACAUGAAGUGGAGGUGUGGAUAUAUAUAUGUGGGAUCAGGAUAUUGCAACUGUGCGCUUCAUUGUAAGCAACAAUGCGCUGUAUGUUCUCCCCGUGUUUCAUGUUACAAGUCAUUUUUUUCA
Sequence
(XR_003240203.1):
UAGCCCUAGGCCGAGCUUAGUUUCUGGUUGCAAACCGUACGGAAUCCCCUUUCCUCCCUCUCUUGCCACGAACCCUUCGCCGUCGCCGGCGAUCCCACCGACUCCCAGCCGCCUCUGCUUCCCCGGCGAUGUCUCUGCUUUGCGCUCCGCCGUCAAUGCGCGUUGCCCGGGCUAUGCGUCGCCUUCUCCCUGCGUCCUUGUGAGACCCGAGCCGCAAAUCCAGGCCCCAAGCGGGAUGCCACGCCGAGCCGCAGGAUUGACAGAACUCGGGGAGGUCUCCUGAUCCGGUGGUUGUUCGGUUCGCUGCCCCCUCCUUGCAUUGAUAAAGGAUUUUCUUGCAAGCCACUAGAUAUGGACCCAUGAAACGGACGAGGACGGCAUCUUACUGAAAUAGUACAGCGAGGAGUACUCUGCACACCGUGGUUGGAUGGAGAUAUACAUCGCAACAACUGAACAAGAUAAGGAUGAUUAGGAUGAGUUGAGGUGGGUUAUGGGCUAAAUUAUAAAGGCUUCCACAUAUCACCUCCCAUGUCUACUAAUCUAUUAUCAAAGCAACCAAAGAUCUAACUGCAGCUCCUGUUAUAUCAGUUGUCGAGAACUCCAUCUUGAAAGGACCCCCAACUGACAGUCGUCUCAGCAAAGUUGAUGAAUUUUUCUGCUUUUUCCUUGAACGUUGGGCCACUGCAGGAGUCUGAGCCAGGAAUUGGAAUGGAGCCUCUGGAGACGAUCCUGCAAUCCAAUGGAAGCAAAUACAUGUAUAGCUGAGCAUGCACCAAAUAUGAGAAGUACUGUCCUGUGCCGCUAAGGCAGGAUAUUGGGCCGAAGAUAUUUUCGGCAGCAUUCUGGAGAUGGUCAAGUUCGUACGGAACUGGAGAGGUACCACUUGGUGUAAACUCUUUUGAGCAGCUUACUAUUUUUGCAGGAAUCCUCCUGUAUAAGUUACAGCCAUGGUAGUCAUCAGGCGGUAAACUGUCGACCAUGAGCUUCUGGAGAGGGCAUGGAAACGGAAGGAGAUGGAUGAUGUUGAUGACGGCCUCCUUGUAAUCUAUGGAGGUGACCUUGCAAGGCCCCAGAAUUGGGUGAUGUAGGAUGGUGUCUUGGCCAGAGCAUGCUAGCCUCGCGCAUGAAGCGCGGCAUGCUGAUGAUGUAUUGCUGGAUUCAAGCCGGUGAGGGAAACGGAUCUCUGGUCCAUCCUUGCUGCACCGGGACGGUGGACAAUGCCUGAAGAAGUCGUGGUCAUCCCAGCCUGAAGCUGUGGUGGCCAUGUAGCUGCAGGUGCCAUGGCUGAGGAAAGCAAGCAGGAGAUAUAUGGCGAGGAAUUUGCUACUCAUAUUGAUCUCUGACUCUAGGUGCAAAAGCAAUUGUGUGUGUGAUAACUGUAGUAUGUUCCCUUGAAAAAAAAAAGAGAUAACUGUAGUCUGUACUCUGUAGGUAUUCCAUAUAUGUACAUGAAGUGGAGGUGUGGAUAUAUAUAUGUGGGAUCAGGAUAUUGCAACUGUGCGCUUCAUUGUAAGCAACAAUGCGCUGUAUGUUCUCCCCGUGUUUCAUGUUACAAGUCAUUUUUUUCAUAUUAUAAGUCAAUUUGACUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.91%
ME_num:
MEP:
50.81%
HE_num:
HEP:
17.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.67
Avg Expression:
8.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.26961807889841 | 3.86870965094964e-08 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.47840784238042 | 0.0109048644082327 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.21452334514455 | 0.0176442848279368 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.43038019470572 | 0.0238916046952756 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.45112134022016 | 0.0170859372738607 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -7.1389892098184 | 0.0016118915412402 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.2170042747713 | 0.00188637203958194 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.36600527872432 | 0.00413523538920369 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.36612717754792 | 0.00417484407080755 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.36622131181093 | 0.00415044480081942 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.01770907938776 | 0.0275937221962895 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.04280312101469 | 0.000784246648426072 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.08087947537091 | 0.0136487040172338 |