| SRR5560729 | caryopsis | wild_type | 8.28 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 5.52 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.00 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.81 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.75 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 6.04 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 6.81 | HC |
| SRR2338869 | endosprem | high_temperature | 3.78 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.59 | HC |
| SRR1213691 | flower | wt | 6.84 | HC |
| SRR8060836 | leaf | wild_type | 4.47 | HC |
| SRR8240824 | leaf | wild_type | 3.28 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.88 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.22 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.03 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.20 | HC |
| SRR1213693 | leaf | wt | 4.20 | HC |
| SRR5856933 | leaf | control | 2.67 | HC |
| SRR6168973 | leaf | none (control) | 4.82 | HC |
| SRR6168974 | leaf | none (control) | 5.43 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.65 | HC |
| SRR1633182 | panicle | WT | 8.25 | HC |
| SRR1633185 | panicle | WT | 10.87 | HC |
| SRR5126147 | root | "mock,1_day" | 4.60 | HC |
| SRR5126148 | root | "mock,1_day" | 4.96 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.65 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.77 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 5.76 | HC |
| SRR5126153 | root | "mock,7_days" | 4.93 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 5.85 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.44 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.33 | HC |
| SRR5126165 | root | "mock,14_days" | 5.98 | HC |
| SRR5126167 | root | "mock,14_days" | 4.27 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.27 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.49 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.92 | HC |
| SRR1213695 | root | wt | 7.40 | HC |
| SRR6502108 | root | control | 5.44 | HC |
| SRR1740435 | root_differentiation_zone | wt | 3.78 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.36 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.75 | HC |
| SRR1740433 | root_elongation_zone | wt | 4.90 | HC |
| SRR1740429 | root_meristematic_zone | wt | 6.44 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.29 | HC |
| SRR2154083 | seedling | wt | 5.39 | HC |
| SRR3098741 | seedling | wt | 2.77 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.57 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.05 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.52 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 18.59 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 14.61 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 16.98 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 21.00 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 22.27 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 20.55 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 23.04 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 17.52 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 18.53 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 15.67 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 14.32 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 17.12 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 9.12 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.64 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 9.30 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 9.18 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 9.64 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.74 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.54 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 8.19 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 8.53 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 9.38 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 6.07 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.72 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.00 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.87 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.85 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 4.62 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 5.31 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.81 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 5.31 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 4.05 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 5.03 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.59 | HC |