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Degradome-based validation of plant microRNAs and their targets

Please upload degradome data: (Optional)

- The maximum file size limit: 500 MB
- Supported file formats: .txt, .fa, .fasta

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Plant species    (miRNA sequences are from miRBase)

cDNA libraries

Degradomes     (more details of degradome data)

Do you agree to add your degradome data to DPMIND?
Yes No

Description of degradome

Mismatches allowed for mapping degradome reads to cDNA libraries

Normalization value

Offset from the spliced position(nt)

Generate t-plot figures?
Yes          No

Type of t-plot figures

Reliability of t-plot figures
Degradome-based validation of plant microRNAs and their targets

Use built-in prediction algorithm        Use psRNAtarget predicted results directly

Please upload microRNA/small RNA sequences:

- The maximum file size limit: 300 MB
- Supported file formats: .fa, .fasta

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Please upload degradome data: (Optional)

- The maximum file size limit: 500 MB
- Supported file formats: .txt, .fa, .fasta

0%

Parameters of built-in prediction algorithm

Plant species

cDNA libraries

Mismatches in seed region

Mismatches in total region

Expectation for prediction

Parameters of degradome-based verification algorithm

Degradomes     (more details of degradome data)

Do you agree to add your degradome data to DPMIND?
Yes No

Description of degradome

Mismatches allowed for mapping degradome reads to cDNA libraries

Normalization value

Offset from the spliced position(nt)

Generate t-plot figures?
Yes        No

Type of t-plot figures

Reliability of t-plot figures
All Degradomes-based validation of plant microRNAs and their targets

Use built-in prediction algorithm        Use psRNAtarget predicted results directly

Please upload microRNA/small RNA sequences:

- The maximum file size limit: 300 MB
- Supported file formats: .fa, .fasta

0%

Parameters of built-in prediction algorithm

Plant species

cDNA libraries

Mismatches in seed region

Mismatches in total region

Expectation for prediction

Parameters of degradome-based verification algorithm

Mismatches allowed for mapping degradome reads to references

Offset from the spliced position(nt)

Generate t-plot figures?
Yes        No

Type of t-plot figures

Reliability of t-plot figures
Build Networks of plant microRNAs and their targets

Please upload the interactions between microRNAs and targets:

- The maximum file size limit: 200 MB
- Supported file formats: .txt, .xls, .xlsx
Please make sure the uploaded file follows the example format (Each column is split by TAB).

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Crop Bioinformatics Group, College of Agriculture, NanJing Agricultural University Contact us at huangji@njau.edu.cn (Ji Huang) or 2016201004@njau.edu.cn (Yuhan Fei) Safari, Chrome, Firefox, 360Browser, Edge, IE10 or 11 are both recommended.