GEO_accession GEO_ID sample_ID mutant co-exp data_type tissue age control(0)/treatment(1) stimulus genotype title sequencer GSE34875 GSM856146 SRR394312 N SRR394316 single-end root 14 days after germination 0 profiling of roots cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE34875 GSM856147 SRR394313 N SRR394317 single-end stem 14 days after germination 0 profiling of stems cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE34875 GSM856148 SRR394314 N SRR394318 single-end leaf 14 days after germination 0 profiling of leaves cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE34875 GSM856149 SRR394315 N SRR394319 single-end cotyledon 20 days after flowering 0 profiling of cotyledons cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE37895 GSM1213858 SRR955300 N None single-end seed_coat Early maturation-stage 0 Early maturation-stage seed coat Williams 82 Methylation Changes in Soybean Early Maturation Seed Parts Illumina HiSeq 2000 GSE37895 GSM1213859 SRR955301 N None single-end cotyledon Early maturation-stage 0 Early maturation-stage embryonic cotyledons Williams 82 Methylation Changes in Soybean Early Maturation Seed Parts Illumina HiSeq 2000 GSE37895 GSM1213860 SRR955302 N SRR955406 single-end embryo_axis Early maturation-stage 0 Early maturation-stage embryonic axis Williams 82 Methylation Changes in Soybean Early Maturation Seed Parts Illumina HiSeq 2000 GSE114074 GSM3132299 SRR7124309 N SRR7124207 single-end leaf None 0 gmax FC33243 Anderson FC33243 Anderson Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132300 SRR7124310 N SRR7124208 single-end leaf None 0 gmax PI548360 Korean PI548360 Korean Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132301 SRR7124311 N SRR7124209 single-end leaf None 0 gmax PI548362 Lincoln PI548362 Lincoln Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132302 SRR7124312 N SRR7124210 single-end leaf None 0 gmax PI548379 Mandarin PI548379 Mandarin Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132303 SRR7124313 N SRR7124211 single-end leaf None 0 gmax PI548391 Mukden PI548391 Mukden Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132304 SRR7124314 N SRR7124212 single-end leaf None 0 gmax PI548406 Richland PI548406 Richland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132305 SRR7124315 N SRR7124213 single-end leaf None 0 gmax PI548456 Haberlandt PI548456 Haberlandt Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132306 SRR7124316 N SRR7124214 single-end leaf None 0 gmax PI548477 Ogden PI548477 Ogden Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132307 SRR7124317 N SRR7124215 single-end leaf None 0 gmax PI548484 Ralsoy PI548484 Ralsoy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132308 SRR7124318 N SRR7124216 single-end leaf None 0 gmax PI548485 Roanoke PI548485 Roanoke Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132309 SRR7124319 N SRR7124217 single-end leaf None 0 gmax PI548488 S-100 PI548488 S-100 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132310 SRR7124320 N SRR7124218 single-end leaf None 0 gmax PI508266 Young PI508266 Young Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132311 SRR7124321 N SRR7124219 single-end leaf None 0 gmax PI548493 Tokyo PI548493 Tokyo Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132312 SRR7124322 N SRR7124220 single-end leaf None 0 gmax PI548505 Amcor PI548505 Amcor Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132313 SRR7124323 N SRR7124221 single-end leaf None 0 gmax PI548510 Beeson PI548510 Beeson Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132314 SRR7124324 N SRR7124222 single-end leaf None 0 gmax PI548512 Century PI548512 Century Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132315 SRR7124325 N SRR7124223 single-end leaf None 0 gmax PI548516 Blackhawk PI548516 Blackhawk Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132316 SRR7124326 N SRR7124224 single-end leaf None 0 gmax PI548517 Bonus PI548517 Bonus Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132317 SRR7124327 N SRR7124225 single-end leaf None 0 gmax PI548523 Pella PI548523 Pella Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132318 SRR7124328 N SRR7124226 single-end leaf None 0 gmax PI548527 Calland PI548527 Calland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132319 SRR7124329 N SRR7124227 single-end leaf None 0 gmax PI548530 Chippewa PI548530 Chippewa Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132320 SRR7124330 N SRR7124228 single-end leaf None 0 gmax PI548533 Clark PI548533 Clark Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132321 SRR7124331 N SRR7124229 single-end leaf None 0 gmax PI518671 Williams82 PI518671 Williams 82 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132322 SRR7124332 N SRR7124230 single-end leaf None 0 gmax PI548540 Corsoy PI548540 Corsoy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132323 SRR7124333 N SRR7124231 single-end leaf None 0 gmax PI548542 Cumberland PI548542 Cumberland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132324 SRR7124334 N SRR7124232 single-end leaf None 0 gmax PI548543 Oakland PI548543 Oakland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132325 SRR7124335 N SRR7124233 single-end leaf None 0 gmax PI548545 Merit PI548545 Merit Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132326 SRR7124336 N SRR7124234 single-end leaf None 0 gmax PI548555 Douglas PI548555 Douglas Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132327 SRR7124337 N SRR7124235 single-end leaf None 0 gmax PI548562 Ford PI548562 Ford Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132328 SRR7124338 N SRR7124236 single-end leaf None 0 gmax PI548570 Harcor PI548570 Harcor Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132329 SRR7124339 N SRR7124237 single-end leaf None 0 gmax PI548573 Harosoy PI548573 Harosoy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132330 SRR7124340 N SRR7124238 single-end leaf None 0 gmax PI548574 Shelby PI548574 Shelby Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132331 SRR7124341 N SRR7124239 single-end leaf None 0 gmax PI548577 Hawkeye PI548577 Hawkeye Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132332 SRR7124342 N SRR7124240 single-end leaf None 0 gmax PI518673 Lawrence PI518673 Lawrence Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132333 SRR7124343 N SRR7124241 single-end leaf None 0 gmax PI548586 Kent PI548586 Kent Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132334 SRR7124344 N SRR7124242 single-end leaf None 0 gmax PI548603 Perry PI548603 Perry Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132335 SRR7124345 N SRR7124243 single-end leaf None 0 gmax PI548628 Wayne PI548628 Wayne Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132336 SRR7124346 N SRR7124244 single-end leaf None 0 gmax PI548631 Williams PI548631 Williams Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132337 SRR7124347 N SRR7124245 single-end leaf None 0 gmax PI548632 Woodworth PI548632 Woodworth Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132338 SRR7124348 N SRR7124246 single-end leaf None 0 gmax PI548634 Zane PI548634 Zane Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132339 SRR7124349 N SRR7124247 single-end leaf None 0 gmax PI548654 Hill PI548654 Hill Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132340 SRR7124350 N SRR7124248 single-end leaf None 0 gmax PI548657 Jackson PI548657 Jackson Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132341 SRR7124351 N SRR7124249 single-end leaf None 0 gmax PI548975 Centennial PI548975 Centennial Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132342 SRR7124352 N SRR7124250 single-end leaf None 0 gmax PI548980 Hood PI548980 Hood Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132343 SRR7124353 N SRR7124251 single-end leaf None 0 gmax PI548298 A.K.(Harrow) PI548298 A.K.(Harrow) Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132344 SRR7124354 N SRR7124252 single-end leaf None 0 gmax PI548983 Tracy PI548983 Tracy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132345 SRR7124355 N SRR7124253 single-end leaf None 0 gmax PI548986 Brim PI548986 Brim Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132346 SRR7124356 N SRR7124254 single-end leaf None 0 gmax PI548987 Dare PI548987 Dare Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132347 SRR7124357 N SRR7124255 single-end leaf None 0 gmax PI548988 Pickett PI548988 Pickett Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132348 SRR7124358 N SRR7124256 single-end leaf None 0 gmax PI548989 Ransom PI548989 Ransom Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132349 SRR7124359 N SRR7124257 single-end leaf None 0 gmax PI553039 Davis PI553039 Davis Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132350 SRR7124360 N SRR7124258 single-end leaf None 0 gmax PI553046 Gasoy17 PI553046 Gasoy17 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132351 SRR7124361 N SRR7124259 single-end leaf None 0 gmax PI572239 Holladay PI572239 Holladay Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132352 SRR7124362 N SRR7124260 single-end leaf None 0 gmax PI617045 NC-Roy PI617045 NC-Roy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132353 SRR7124363 N SRR7124261 single-end leaf None 0 gmax PI630984 5601T PI630984 5601T Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132354 SRR7124364 N SRR7124262 single-end leaf None 0 gmax PI548311 Capital PI548311 Capital Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132355 SRR7124365 N SRR7124263 single-end leaf None 0 gmax PI641156 NC-Raleigh PI641156 NC-Raleigh Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132356 SRR7124366 N SRR7124264 single-end leaf None 0 gmax PI88788 unnamed PI88788 unnamed Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132357 SRR7124367 N SRR7124265 single-end leaf None 0 gmax PI548318 Dunfield PI548318 Dunfield Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132358 SRR7124368 N SRR7124266 single-end leaf None 0 gmax PI548348 Illini PI548348 Illini Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132359 SRR7124369 N SRR7124267 single-end leaf None 0 gmax PI548356 Kanro PI548356 Kanro Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132360 SRR7124370 N SRR7124308 single-end leaf None 0 gmax NAM IA3023 NAM IA3023 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132361 SRR7124371 N SRR7124268 single-end leaf None 0 gmax NAM02 TN05-3027 NAM02 TN05-3027 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132362 SRR7124372 N SRR7124269 single-end leaf None 0 gmax NAM03 4J105-3-4 NAM03 4J105-3-4 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132363 SRR7124373 N SRR7124270 single-end leaf None 0 gmax NAM04 5M20-2-5-2 NAM04 5M20-2-5-2 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132364 SRR7124374 N SRR7124271 single-end leaf None 0 gmax NAM05 CL0J095-4-6 NAM05 CL0J095-4-6 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132365 SRR7124375 N SRR7124272 single-end leaf None 0 gmax NAM06 CL0J173-6-8 NAM06 CL0J173-6-8 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132366 SRR7124376 N SRR7124273 single-end leaf None 0 gmax NAM08 HS6-3976 NAM08 HS6-3976 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132367 SRR7124377 N SRR7124274 single-end leaf None 0 gmax NAM09 Prohio NAM09 Prohio Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132368 SRR7124378 N SRR7124275 single-end leaf None 0 gmax NAM10 LD00-3309 NAM10 LD00-3309 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132369 SRR7124379 N SRR7124276 single-end leaf None 0 gmax NAM11 LD01-5907 NAM11 LD01-5907 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132370 SRR7124380 N SRR7124277 single-end leaf None 0 gmax NAM12 LD02-4485 NAM12 LD02-4485 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132371 SRR7124381 N SRR7124278 single-end leaf None 0 gmax NAM13 LD02-9050 NAM13 LD02-9050 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132372 SRR7124382 N SRR7124279 single-end leaf None 0 gmax NAM14 Magellan NAM14 Magellan Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132373 SRR7124383 N SRR7124280 single-end leaf None 0 gmax NAM15 Maverick NAM15 Maverick Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132374 SRR7124384 N SRR7124281 single-end leaf None 0 gmax NAM17 S06-13640 NAM17 S06-13640 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132375 SRR7124385 N SRR7124282 single-end leaf None 0 gmax NAM18 NE3001 NAM18 NE3001 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132376 SRR7124386 N SRR7124283 single-end leaf None 0 gmax NAM22 Skylla NAM22 Skylla Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132377 SRR7124387 N SRR7124284 single-end leaf None 0 gmax NAM23 U03-100612 NAM23 U03-100612 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132378 SRR7124388 N SRR7124285 single-end leaf None 0 gmax NAM24 LG03-2979 NAM24 LG03-2979 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132379 SRR7124389 N SRR7124286 single-end leaf None 0 gmax NAM25 LG03-3191 NAM25 LG03-3191 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132380 SRR7124390 N SRR7124287 single-end leaf None 0 gmax NAM26 LG04-4717 NAM26 LG04-4717 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132381 SRR7124391 N SRR7124288 single-end leaf None 0 gmax NAM27 LG05-4292 NAM27 LG05-4292 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132382 SRR7124392 N SRR7124289 single-end leaf None 0 gmax NAM28 LG05-4317 NAM28 LG05-4317 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132383 SRR7124393 N SRR7124290 single-end leaf None 0 gmax NAM29 LG05-4464 NAM29 LG05-4464 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132384 SRR7124394 N SRR7124291 single-end leaf None 0 gmax NAM30 LG05-4832 NAM30 LG05-4832 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132385 SRR7124395 N SRR7124292 single-end leaf None 0 gmax NAM31 LG90-2550 NAM31 LG90-2550 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132386 SRR7124396 N SRR7124293 single-end leaf None 0 gmax NAM32 LG92-1255 NAM32 LG92-1255 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132387 SRR7124397 N SRR7124294 single-end leaf None 0 gmax NAM33 LG94-1128 NAM33 LG94-1128 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132388 SRR7124398 N SRR7124295 single-end leaf None 0 gmax NAM34 LG94-1906 NAM34 LG94-1906 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132389 SRR7124399 N SRR7124296 single-end leaf None 0 gmax NAM36 LG97-7012 NAM36 LG97-7012 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132390 SRR7124400 N SRR7124297 single-end leaf None 0 gmax NAM37 LG98-1605 NAM37 LG98-1605 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132391 SRR7124401 N SRR7124298 single-end leaf None 0 gmax NAM38 LG00-3377 NAM38 LG00-3377 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132392 SRR7124402 N SRR7124299 single-end leaf None 0 gmax NAM39 LG04-6000 NAM39 LG04-6000 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132393 SRR7124403 N SRR7124300 single-end leaf None 0 gmax NAM40 PI398.881 NAM40 PI398.881 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132394 SRR7124404 N SRR7124301 single-end leaf None 0 gmax NAM41 PI427.136 NAM41 PI427.136 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132395 SRR7124405 N SRR7124302 single-end leaf None 0 gmax NAM42 PI437.169B NAM42 PI437.169B Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132396 SRR7124406 N SRR7124303 single-end leaf None 0 gmax NAM46 PI507.681B NAM46 PI507.681B Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132397 SRR7124407 N SRR7124304 single-end leaf None 0 gmax NAM48 PI518.751 NAM48 PI518.751 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132398 SRR7124408 N SRR7124305 single-end leaf None 0 gmax NAM50 PI561.370 NAM50 PI561.370 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132399 SRR7124409 N SRR7124306 single-end leaf None 0 gmax NAM54 PI404.188A NAM54 PI404.188A Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132400 SRR7124410 N SRR7124307 single-end leaf None 0 gmax NAM64 PI574.486 NAM64 PI574.486 Epigenomics of Glycine max Illumina HiSeq 2000 GSE94299 GSM2472722 SRR5220387 N SRR5220366 single-end cotyledon 24 hours 0 24h-2,4-D,40 mg/l of 2,4 D medium, Embryo Initiation, 3-5 mm cotyledon, for embryo initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472723 SRR5220388 N SRR5220369 single-end cotyledon 24 hours 0 24h+2,4-D rep1,40 mg/l of 2,4 D medium, Embryo Initiation, 3-5 mm cotyledon, for embryo initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472724 SRR5220389 N SRR5220370 single-end cotyledon 24 hours 0 24h+2,4-D rep2,40 mg/l of 2,4 D medium, Embryo Initiation, 3-5 mm cotyledon, for embryo initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472725 SRR5220390 N SRR5220371 single-end cotyledon 24 hours 0 24h+2,4-D rep3,40 mg/l of 2,4 D medium, Embryo Initiation, 3-5 mm cotyledon, for embryo initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472726 SRR5220391 N SRR5220372 single-end embryo 6 weeks 0 6 wk globular rep1,40 mg/l of 2,4 D medium, Embryo Initiation, young globular embryo tissue, embryogenic, regeneratable, non-transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472727 SRR5220392 N SRR5220373 single-end embryo 6 weeks 0 6 wk globular rep2,40 mg/l of 2,4 D medium, Embryo Initiation, young globular embryo tissue, embryogenic, regeneratable, non-transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472728 SRR5220393 N SRR5220374 single-end embryo 6 weeks 0 6 wk globular rep3,20 mg/l of 2,4 D medium, Embryo Maintenance, young globular embryo tissue, embryogenic, can regenerate, non-transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472729 SRR5220394 N SRR5220375 single-end embryo 6 weeks 0 6 wk diff rep1,20 mg/l of 2,4 D medium, Embryo Maintenance, differentiated embryo, non-embryogenic Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472730 SRR5220395 N SRR5220376 single-end embryo 6 weeks 0 6 wk diff rep2,20 mg/l of 2,4 D medium, Embryo Maintenance, differentiated embryo, non-embryogenic Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472731 SRR5220396 N SRR5220377 single-end embryo 6 weeks 0 6 wk diff rep3,20 mg/l of 2,4 D medium, Embryo Maintenance, differentiated embryo, non-embryogenic Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472732 SRR5220397 N SRR5220378 single-end embryo 10 weeks + 4 days 0 4-day subculture rep1,20 mg/l of 2,4 D medium, Embryo Maintenance, globular embryo,embryogenic, regeneratable, transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472733 SRR5220398 N SRR5220379 single-end embryo 10 weeks + 4 days 0 4-day subculture rep2,20 mg/l of 2,4 D medium, Embryo Maintenance, globular embryo,embryogenic, regeneratable, transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472734 SRR5220399 N SRR5220380 single-end embryo 10 weeks + 4 days 0 4-day subculture rep3,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472735 SRR5220400 N SRR5220381 single-end embryo 6 months 0 6 mo globular rep1,20 mg/l of 2,4 D medium, Embryo Maintenance, globular embryo,embryogenic, regeneratable, transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472736 SRR5220401 N SRR5220382 single-end embryo 6 months 0 6 mo globular rep2,20 mg/l of 2,4 D medium, Embryo Maintenance, globular embryo,embryogenic, regeneratable, transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472737 SRR5220402 N SRR5220383 single-end embryo 6 months 0 6 mo globular rep3,20 mg/l of 2,4 D medium, Embryo Maintenance, globular embryo,embryogenic, regeneratable, transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472738 SRR5220403 N SRR5220384 single-end embryo 12 months 0 12 mo globular,20 mg/l of 2,4 D medium, Embryo Maintenance, old globular embryo, embryogenic, non-regeneratble, non-transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472739 SRR5220404 N SRR5220385 single-end embryo 12 months 0 12 mo dif,20 mg/l of 2,4 D medium, Embryo Maintenance, old differentiated embryo, non-embryogenic, non-regeneratable, non-transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472740 SRR5220405 N SRR5220386 single-end embryo 8 year 0 8 yr globular,20 mg/l of 2,4 D medium, Embryo Maintenance, old globular embryo, embryogenic, non-regeneratable, non-transformable Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE69571 GSM1704047 SRR2051074 N SRR2051082 single-end leaf 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704048 SRR2051075 N SRR2051083 single-end leaf 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704049 SRR2051076 N SRR2051084 single-end root 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704050 SRR2051077 N SRR2051085 single-end root 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704051 SRR2051078 N SRR2051086 single-end leaf 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704052 SRR2051079 N SRR2051087 single-end leaf 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704053 SRR2051080 N SRR2051088 single-end root 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704054 SRR2051081 N SRR2051089 single-end root 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE77796 GSM2059586 SRR3160566 N SRR3160561 single-end leaf 14 days post-inoculation 0 Rsv1_Mock Rsv1-genotype soybean,PI96983 Deep Sequencing Leads to the Identification of Eukaryotic Translation Initiation Factor 5A as a Key Element in Rsv1-Mediated Lethal Systemic Hypersensitive Response to Soybean Mosaic Virus Infection in Soybean Illumina MiSeq GSE77796 GSM2059587 SRR3160568 N SRR3160563 single-end leaf 14 days post-inoculation 1 Rsv1_SMV-L Rsv1-genotype soybean,PI96983 Deep Sequencing Leads to the Identification of Eukaryotic Translation Initiation Factor 5A as a Key Element in Rsv1-Mediated Lethal Systemic Hypersensitive Response to Soybean Mosaic Virus Infection in Soybean Illumina MiSeq GSE77796 GSM2059588 SRR3160569 N SRR3160565 single-end leaf 14 days post-inoculation 1 Rsv1_SMV-G7 Rsv1-genotype soybean,PI96983 Deep Sequencing Leads to the Identification of Eukaryotic Translation Initiation Factor 5A as a Key Element in Rsv1-Mediated Lethal Systemic Hypersensitive Response to Soybean Mosaic Virus Infection in Soybean Illumina MiSeq GSE76636 GSM2029565 SRR3090714 N SRR3090710 single-end leaf 14 days post-inoculation 0 Williams82_Mock Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq GSE76636 GSM2029566 SRR3090715 N SRR3090711 single-end leaf 14 days post-inoculation 1 Williams82_SMV-L Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq GSE76636 GSM2029567 SRR3090716 N SRR3090712 single-end leaf 14 days post-inoculation 1 Williams82_SMV-LRB Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq GSE76636 GSM2029568 SRR3090717 N SRR3090713 single-end leaf 14 days post-inoculation 1 Williams82_SMV-G7 Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq GSE69572 GSM1704055 SRR2051070 N None single-end carpel R2-R3 soybean developmental stage 0 None Urano Novel and Conserved microRNAs in soybean floral whorls Illumina Genome Analyzer IIx GSE69572 GSM1704056 SRR2051071 N None single-end stamen R2-R3 soybean developmental stage 0 None Urano Novel and Conserved microRNAs in soybean floral whorls Illumina Genome Analyzer IIx GSE69572 GSM1704057 SRR2051072 N None single-end petal R2-R3 soybean developmental stage 0 None Urano Novel and Conserved microRNAs in soybean floral whorls Illumina Genome Analyzer IIx GSE69572 GSM1704058 SRR2051073 N None single-end flower R2-R3 soybean developmental stage 0 None Urano Novel and Conserved microRNAs in soybean floral whorls Illumina Genome Analyzer IIx GSE76435 GSM2011599 SRR3067737 N None single-end leaf At the one true-leaf stage 0 leaf_control_without_chilling Taiwan 75 Identification of chilling responsive microRNAs and their targets in vegetable soybean (Glycine max L.) Illumina HiSeq 2500 GSE76435 GSM2011600 SRR3067738 N None single-end leaf At the one true-leaf stage 1 24h chilling treatment Taiwan 75 Identification of chilling responsive microRNAs and their targets in vegetable soybean (Glycine max L.) Illumina HiSeq 2500 GSE72902 GSM1874217 SRR2340571 N None single-end stem trefoil stage 0 stem at the trefoil stage Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874218 SRR2340572 N None single-end leaf trefoil stage 0 old leaf at the trefoil stage Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874219 SRR2340573 N None single-end leaf trefoil stage 0 new leaf at the trefoil stage Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874220 SRR2340574 N None single-end cotyledon trefoil stage 0 old cotyledon at the trefoil stage Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874221 SRR2340575 N None single-end leaf stage of flower bud differentiation 0 old leaf at the stage of flower bud differentiation Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874222 SRR2340576 N None single-end leaf stage of flower bud differentiation 0 new leaf at the stage of flower bud differentiation Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874223 SRR2340577 N None single-end leaf_bud stage of flower bud differentiation 0 leaf bud at the stage of flower bud differentiation Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874224 SRR2340578 N None single-end flower_bud stage of flower bud differentiation 0 flower bud at the stage of flower bud differentiation Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874225 SRR2340579 N None single-end seed around 10 weeks 0 developing seeds around 10 weeks Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874226 SRR2340580 N None single-end leaf senescence leaf 0 senescence leaf Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874227 SRR2340581 N None single-end seed around 8 weeks 0 developing seeds around 8 weeks Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874228 SRR2340582 N None single-end seed around 6 weeks 0 developing seeds around 6 weeks Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874229 SRR2340583 N None single-end pod three weeks at the beginning stage of seed development 0 pod of three weeks at the beginning stage of seed development Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874230 SRR2340584 N None single-end pod two weeks at the beginning stage of seed development 0 pod of two weeks at the beginning stage of seed development Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874231 SRR2340585 N None single-end pod one week at the beginning stage of seed development 0 pod of one week at the beginning stage of seed development Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874232 SRR2340586 N None single-end stem stage of germination 0 stem at the stage of germination Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874233 SRR2340587 N None single-end root stage of germination 0 root at the stage of germination Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874234 SRR2340588 N None single-end cotyledon stage of germination 0 cotyledon at the stage of germination Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874235 SRR2340589 N None single-end leaf stage of germination 0 new leaf at the stage of germination Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874236 SRR2340590 N None single-end flower_bud before flowering at the stage of flowering 0 bud before flowering at the stage of flowering Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874237 SRR2340591 N None single-end flower stage of flowering 0 florescence at the stage of flowering Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874238 SRR2340592 N None single-end flower florescence stage on a different date 0 flower at florescence stage on a different date Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE72902 GSM1874239 SRR2340593 N None single-end flower 5 days after flowering at the stage of flowering 0 5 days after flowering at the stage of flowering Williams 82 Comprehensive analyses of microRNA gene evolution in paleopolyploid soybean genome Illumina HiSeq 2000 GSE56859 GSM1370294 SRR1240697 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Williams Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370295 SRR1240698 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps1-a Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370296 SRR1240699 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps1-c Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370297 SRR1240700 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps1-k Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370298 SRR1240701 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps3-a Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370299 SRR1240702 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps3-b Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370300 SRR1240703 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps3-c Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370301 SRR1240704 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps4 Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370302 SRR1240705 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps5 Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370303 SRR1240706 N None single-end stem None 0 Soybean hypocotyl-mock-inoculated Rps6 Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370304 SRR1240707 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Williams Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370305 SRR1240708 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps1-a Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370306 SRR1240709 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps1-c Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370307 SRR1240710 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps1-k Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370308 SRR1240711 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps3-a Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370309 SRR1240712 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps3-b Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370310 SRR1240713 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps3-c Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370311 SRR1240714 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps4 Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370312 SRR1240715 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps5 Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE56859 GSM1370313 SRR1240716 N None single-end stem None 1 Soybean hypocotyl-P. sojae inoculated Rps6 Small RNA mediated immune responses: insights from analyses of nine soybean R-gene near-isogenic lines and their susceptible parent Illumina HiScanSQ GSE58779 GSM1419316 SRR1451604 N None single-end anther None 0 Anthers, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419317 SRR1451605 N None single-end anther None 0 Anthers, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419318 SRR1451606 N None single-end ovary None 0 Ovaries, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419319 SRR1451607 N None single-end ovary None 0 Ovaries, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419321 SRR1451609 N None single-end flower None 0 Unopened flowers, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419322 SRR1451610 N None single-end flower None 0 Opened flowers, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419323 SRR1451611 N None single-end flower None 0 Opened flowers, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419324 SRR1451612 N None single-end leaf None 0 well-watered IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419325 SRR1451613 N None single-end leaf None 0 well-watered IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419326 SRR1451614 N None single-end leaf None 0 well-watered IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419327 SRR1451615 N None single-end leaf None 0 well-watered LD003309 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419328 SRR1451616 N None single-end leaf None 0 well-watered LD003309 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419329 SRR1451617 N None single-end leaf None 0 well-watered LD003309 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419330 SRR1451618 N None single-end leaf None 1 drought stressed IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419331 SRR1451619 N None single-end leaf None 1 drought stressed IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419332 SRR1451620 N None single-end leaf None 1 drought stressed IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419333 SRR1451621 N None single-end leaf None 1 drought stressed LD003309 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419334 SRR1451622 N None single-end leaf None 1 drought stressed LD003309 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419335 SRR1451623 N None single-end leaf None 1 drought stressed LD003309 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419336 SRR1451624 N None single-end leaf None 0 water 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419337 SRR1451625 N None single-end leaf None 0 water 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419338 SRR1451626 N None single-end leaf None 1 chitin treated 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419339 SRR1451627 N None single-end leaf None 1 chitin treated 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419340 SRR1451628 N None single-end leaf None 0 water 30 minutes Dassel Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419342 SRR1451630 N None single-end leaf None 1 chitin treated 30 minutes Dassel Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419343 SRR1451631 N None single-end leaf None 1 chitin treated 30 minutes Dassel Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419344 SRR1451632 N None single-end leaf None 0 water 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419345 SRR1451633 N None single-end leaf None 0 water 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419346 SRR1451634 N None single-end leaf None 1 chitin treated 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419347 SRR1451635 N None single-end leaf None 1 chitin treated 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419348 SRR1451636 N None single-end leaf None 0 water 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419349 SRR1451637 N None single-end leaf None 0 water 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419350 SRR1451638 N None single-end leaf None 1 flagellin treated 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419351 SRR1451639 N None single-end leaf None 1 flagellin treated 30 minutes Williams 82 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419352 SRR1451640 N None single-end leaf None 0 water 30 minutes Dassel Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419353 SRR1451641 N None single-end leaf None 0 water 30 minutes Dassel Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419354 SRR1451642 N None single-end leaf None 1 flagellin treated 30 minutes Dassel Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419355 SRR1451643 N None single-end leaf None 1 flagellin treated 30 minutes Dassel Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419356 SRR1451644 N None single-end leaf None 0 water 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419357 SRR1451645 N None single-end leaf None 0 water 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419358 SRR1451646 N None single-end leaf None 1 flagellin treated 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419359 SRR1451647 N None single-end leaf None 1 flagellin treated 30 minutes Victon Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419360 SRR1451648 N None single-end leaf None 0 Bent leaf, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419361 SRR1451649 N None single-end leaf None 0 Bent leaf, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419362 SRR1451650 N None single-end nodule 10 days post-inoculation 0 Nodules, 10 days post-inoculation, dissected from roots, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419363 SRR1451651 N None single-end nodule 10 days post-inoculation 0 Nodules, 10 days post-inoculation, dissected from roots, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419364 SRR1451652 N None single-end nodule 10 days post-inoculation 0 Nodules, 10 days post-inoculation, dissected from roots, rep 3 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419367 SRR1451655 N None single-end nodule 15 days post-inoculation 0 Nodules, 15 days post-inoculation, dissected from roots, rep 3 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419368 SRR1451656 N None single-end nodule 20 days post-inoculation 0 Nodules, 20 days post-inoculation, dissected from roots, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419369 SRR1451657 N None single-end nodule 20 days post-inoculation 0 Nodules, 20 days post-inoculation, dissected from roots, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419370 SRR1451658 N None single-end nodule 20 days post-inoculation 0 Nodules, 20 days post-inoculation, dissected from roots, rep 3 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419371 SRR1451659 N None single-end nodule 25 days post-inoculation 0 Nodules, 25 days post-inoculation, dissected from roots, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419372 SRR1451660 N None single-end nodule 25 days post-inoculation 0 Nodules, 25 days post-inoculation, dissected from roots, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419373 SRR1451661 N None single-end nodule 25 days post-inoculation 0 Nodules, 25 days post-inoculation, dissected from roots, rep 3 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419374 SRR1451662 N None single-end nodule 30 days post-inoculation 0 Nodules, 30 days post-inoculation, dissected from roots, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419375 SRR1451663 N None single-end nodule 30 days post-inoculation 0 Nodules, 30 days post-inoculation, dissected from roots, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419376 SRR1451664 N None single-end nodule 30 days post-inoculation 0 Nodules, 30 days post-inoculation, dissected from roots, rep 3 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419377 SRR1451665 N None single-end nodule 10 days post-inoculation 0 Nodules, 10 days post-inoculation, dissected from roots None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419378 SRR1451666 N None single-end nodule 15 days post-inoculation 0 Nodules, 15 days post-inoculation, dissected from roots None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419379 SRR1451667 N None single-end nodule 20 days post-inoculation 0 Nodules, 20 days post-inoculation, dissected from roots None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419380 SRR1451668 N None single-end nodule 25 days post-inoculation 0 Nodules, 25 days post-inoculation, dissected from roots None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419381 SRR1451669 N None single-end nodule 30 days post-inoculation 0 Nodules, 30 days post-inoculation, dissected from roots None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419382 SRR1451670 N None single-end anther None 0 Anthers, dissected from unopened flowers, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419383 SRR1451671 N None single-end anther None 0 Anthers, dissected from unopened flowers, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419384 SRR1451672 N None single-end ovary None 0 Ovaries, dissected from unopened flowers, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419385 SRR1451673 N None single-end ovary None 0 Ovaries, dissected from unopened flowers, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419386 SRR1451674 N None single-end flower 1 day before flowering 0 Unopened flowers, 1 day before flowering, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419387 SRR1451675 N None single-end flower 1 day before flowering 0 Unopen flowers, 1 day before flowering, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419388 SRR1451676 N None single-end flower first day of flowering 0 Opened flowers, the first day of flowering, rep 2 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419389 SRR1451677 N None single-end flower first day of flowering 0 Opened flowers, the first day of flowering, rep 1 None Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419390 SRR1451678 N None single-end leaf None 0 Well-watered soybean leaves (control for drought); line IA3023, rep 1d IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419391 SRR1451679 N None single-end leaf None 0 Drought stressed soybean leaves; line IA3023, rep 1d IA3023 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE58779 GSM1419393 SRR1451681 N None single-end leaf None 0 Drought stressed soybean leaves; line LD003309, rep 1d LD003309 Characterization of small RNAs and their targets in soybean (Glycine max) Illumina HiSeq 2000 GSE57906 GSM1397256 SRR1296582 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Epidermis-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397257 SRR1296583 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Epidermis-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397258 SRR1296584 N None single-end plumule 4 weeks 0 Soybean Early Maturation Stage Axis Plumule-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397259 SRR1296585 N None single-end plumule 4 weeks 0 Soybean Early Maturation Stage Axis Plumule-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397260 SRR1296586 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Parenchyma-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397261 SRR1296587 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Parenchyma-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397263 SRR1296589 N None single-end root_tip 4 weeks 0 Soybean Early Maturation Stage Axis Root Tip-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397264 SRR1296590 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Shoot Apical Meristem-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397265 SRR1296591 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Shoot Apical Meristem-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397266 SRR1296592 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Stele-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397267 SRR1296593 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Stele-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397268 SRR1296594 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Vasculature-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397269 SRR1296595 N None single-end embryo_axis 4 weeks 0 Soybean Early Maturation Stage Axis Vasculature-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397270 SRR1296596 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Abaxial Epidermis-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397272 SRR1296598 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Abaxial Parenchyma-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397273 SRR1296599 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Abaxial Parenchyma-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397274 SRR1296600 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Adaxial Epidermis-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397275 SRR1296601 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Adaxial Epidermis-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397277 SRR1296603 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Adaxial Parenchyma-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397278 SRR1296604 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Vasculature-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397279 SRR1296605 N None single-end cotyledon 4 weeks 0 Soybean Early Maturation Stage Cotyledon Vasculature-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397280 SRR1296606 N None single-end endosperm 4 weeks 0 Soybean Early Maturation Stage Endosperm-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397281 SRR1296607 N None single-end endosperm 4 weeks 0 Soybean Early Maturation Stage Endosperm-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397282 SRR1296608 N None single-end seed_coat 4 weeks 0 Soybean Early Maturation Stage Seed Coat Hourglass-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397283 SRR1296609 N None single-end seed_coat 4 weeks 0 Soybean Early Maturation Stage Seed Coat Hourglass-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397285 SRR1296611 N None single-end seed_coat 4 weeks 0 Soybean Early Maturation Stage Seed Coat Hilum-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397286 SRR1296612 N None single-end seed_coat 4 weeks 0 Soybean Early Maturation Stage Seed Coat Palisade-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397288 SRR1296614 N None single-end seed_coat 4 weeks 0 Soybean Early Maturation Stage Seed Coat Parenchyma-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57906 GSM1397289 SRR1296615 N None single-end seed_coat 4 weeks 0 Soybean Early Maturation Stage Seed Coat Parenchyma-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Early Maturation Stage Illumina HiSeq 2000 GSE57883 GSM1396335 SRR1295516 N None single-end embryo 4 weeks 0 Soybean Cotyledon Stage Embryo Proper-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396336 SRR1295517 N None single-end embryo 4 weeks 0 Soybean Cotyledon Stage Embryo Proper-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396337 SRR1295518 N None single-end embryo_axis 4 weeks 0 Soybean Cotyledon Stage Embryo Proper Axis-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396338 SRR1295519 N None single-end embryo_axis 4 weeks 0 Soybean Cotyledon Stage Embryo Proper Axis-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396339 SRR1295520 N None single-end cotyledon 4 weeks 0 Soybean Cotyledon Stage Embryo Proper Cotyledon-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396340 SRR1295521 N None single-end cotyledon 4 weeks 0 Soybean Cotyledon Stage Embryo Proper Cotyledon-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396342 SRR1295523 N None single-end endosperm 4 weeks 0 Soybean Cotyledon Stage Endosperm-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396344 SRR1295525 N None single-end seed_coat 4 weeks 0 Soybean Cotyledon Stage Seed Coat Epidermis-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396345 SRR1295526 N None single-end seed_coat 4 weeks 0 Soybean Cotyledon Stage Seed Coat Hilum-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396346 SRR1295527 N None single-end seed_coat 4 weeks 0 Soybean Cotyledon Stage Seed Coat Hilum-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396347 SRR1295528 N None single-end seed_coat 4 weeks 0 Soybean Cotyledon Stage Seed Coat Inner Integument-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396348 SRR1295529 N None single-end seed_coat 4 weeks 0 Soybean Cotyledon Stage Seed Coat Inner Integument-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396349 SRR1295530 N None single-end seed_coat 4 weeks 0 Soybean Cotyledon Stage Seed Coat Outer Integument-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57883 GSM1396350 SRR1295531 N None single-end seed_coat 4 weeks 0 Soybean Cotyledon Stage Seed Coat Outer Integument-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Cotyledon Stage Illumina HiSeq 2000 GSE57874 GSM1396278 SRR1294476 N None single-end embryo 4 weeks 0 Soybean Heart Stage Embryo Proper-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396279 SRR1294477 N None single-end embryo 4 weeks 0 Soybean Heart Stage Embryo Proper-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396280 SRR1294478 N None single-end endosperm 4 weeks 0 Soybean Heart Stage Endosperm-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396281 SRR1294479 N None single-end endosperm 4 weeks 0 Soybean Heart Stage Endosperm-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396282 SRR1294480 N None single-end seed_coat 4 weeks 0 Soybean Heart Stage Seed Coat Epidermis-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396283 SRR1294481 N None single-end seed_coat 4 weeks 0 Soybean Heart Stage Seed Coat Epidermis-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396285 SRR1294483 N None single-end seed_coat 4 weeks 0 Soybean Heart Stage Seed Coat Inner Integument-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396286 SRR1294484 N None single-end seed_coat 4 weeks 0 Soybean Heart Stage Seed Coat Outer Integument-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396287 SRR1294485 N None single-end seed_coat 4 weeks 0 Soybean Heart Stage Seed Coat Outer Integument-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396288 SRR1294486 N None single-end suspensor 4 weeks 0 Soybean Heart Stage Suspensor-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1396289 SRR1294487 N None single-end suspensor 4 weeks 0 Soybean Heart Stage Suspensor-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1695750 SRR2040167 N None single-end seed_coat 4 weeks 0 Soybean Heart Stage Hilum-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57874 GSM1695751 SRR2040168 N None single-end seed_coat 4 weeks 0 Soybean Heart Stage Hilum-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage Illumina HiSeq 2000 GSE57845 GSM1394967 SRR2045236 N None single-end endosperm 4 weeks 0 Soybean Globular Stage Endosperm-biological replicate 3 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1394968 SRR2045238 N None single-end endosperm 4 weeks 0 Soybean Globular Stage Endosperm-biological replicate 4 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1394969 SRR1292924 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Hilum-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1394970 SRR1292925 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Hilum-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1394971 SRR1292926 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Inner Integument-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1394972 SRR1292927 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Inner Integument-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1394973 SRR1292928 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Outer Integument-biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1394974 SRR1292929 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Outer Integument-biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1695746 SRR2040133 N None single-end embryo 4 weeks 0 Soybean Globular Stage Embryo Proper-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1695747 SRR2040134 N None single-end embryo 4 weeks 0 Soybean Globular Stage Embryo Proper-Biological replicate 4 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1695748 SRR2040135 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Epidermis-Biological replicate 1 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000 GSE57845 GSM1695749 SRR2040137 N None single-end seed_coat 4 weeks 0 Soybean Globular Stage Seed Coat Epidermis-Biological replicate 2 Williams 82 Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage Illumina HiSeq 2000