GEO_accession GEO_ID sample_ID mutant data_type tissue age control(0)/treatment(1) stimulus genotype title sequencer GSE134050 GSM3934460 SRR8659980 N single-end seedling 10 days 1 5 mM Pcz then with 1 mM BL 1h Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934461 SRR8659979 N single-end seedling 10 days 1 5 mM Pcz then with 1 mM BL 1h Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934462 SRR8659978 N single-end seedling 10 days 1 5 mM Pcz then with 1 mM BL 1h Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934463 SRR8659977 N single-end seedling 10 days 1 5 mM Pcz with 1 mM BL for 8h Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934464 SRR8659976 N single-end seedling 10 days 1 5 mM Pcz with 1 mM BL for 8h Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934465 SRR8659975 N single-end seedling 10 days 1 5 mM Pcz with 1 mM BL for 8h Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934466 SRR8659971 N single-end seedling 10 days 1 5 mM Pcz Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934467 SRR8659970 N single-end seedling 10 days 1 5 mM Pcz Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934468 SRR8659969 N single-end seedling 10 days 1 5 mM Pcz Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934469 SRR8659968 N single-end seedling 10 days 1 5 mM Pcz with 10 nM BL Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934470 SRR8659967 N single-end seedling 10 days 1 5 mM Pcz with 10 nM BL Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934471 SRR8659966 N single-end seedling 10 days 1 5 mM Pcz with 10 nM BL Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934472 SRR8659974 N single-end seedling 10 days 0 mock treated Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934473 SRR8659973 N single-end seedling 10 days 0 mock treated Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE134050 GSM3934474 SRR8659972 N single-end seedling 10 days 0 mock treated Williams 82 Genome-Wide transcriptional profiling elucidating the effects of Brassinosteroid in Glycine max during early vegetative development Illumina HiSeq 2000 GSE129509 GSM3714641 SRR8868860 N single-end nodule emerging 0 Emerging nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714642 SRR8868861 N single-end nodule emerging 0 Emerging nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714643 SRR8868862 N single-end nodule emerging 0 Emerging nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714644 SRR8868863 N single-end root 5-7 days after germination 0 Root segment above and below emerging nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714645 SRR8868864 N single-end root 5-7 days after germination 0 Root segment above and below emerging nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714646 SRR8868865 N single-end root 5-7 days after germination 0 Root segment above and below emerging nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714647 SRR8868866 N single-end nodule mature 1 Mature nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714648 SRR8868867 N single-end nodule mature 1 Mature nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714649 SRR8868868 N single-end nodule mature 1 Mature nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714650 SRR8868869 N single-end root 5-7 days after germination 1 Root segment above and below mature nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714651 SRR8868870 N single-end root 5-7 days after germination 1 Root segment above and below mature nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714652 SRR8868871 N single-end root 5-7 days after germination 1 Root segment above and below mature nodules Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714653 SRR8868872 N single-end lateral_root emerging 0 Emerging lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714654 SRR8868873 N single-end lateral_root emerging 0 Emerging lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714655 SRR8868874 N single-end lateral_root emerging 0 Emerging lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714656 SRR8868875 N single-end root 5-7 days after germination 0 Root segment above and below emerging lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714657 SRR8868876 N single-end root 5-7 days after germination 0 Root segment above and below emerging lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714658 SRR8868877 N single-end root 5-8 days after germination 0 Root segment above and below emerging lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714659 SRR8868878 N single-end lateral_root young 1 Young lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714660 SRR8868879 N single-end lateral_root young 1 Young lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714661 SRR8868880 N single-end lateral_root young 1 Young lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714662 SRR8868881 N single-end root 5-7 days after germination 1 Root segment above and below young lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714663 SRR8868882 N single-end root 5-7 days after germination 1 Root segment above and below young lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3714664 SRR8868883 N single-end root 5-7 days after germination 1 Root segment above and below young lateral roots Williams 82 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean Illumina HiSeq 2000 GSE129509 GSM3039920 SRR6831048 N paired-end leaf 20 days after germination 0 Zn sufficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE111799 GSM3039921 SRR6831049 N paired-end leaf 20 days after germination 0 Zn sufficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE111799 GSM3039922 SRR6831050 N paired-end leaf 20 days after germination 1 Zn deficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE111799 GSM3039923 SRR6831051 N paired-end leaf 20 days after germination 1 Zn deficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE111799 GSM3039924 SRR6831052 N paired-end root 20 days after germination 0 Zn sufficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE111799 GSM3039925 SRR6831053 N paired-end root 20 days after germination 0 Zn sufficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE111799 GSM3039926 SRR6831054 N paired-end root 20 days after germination 1 Zn deficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE111799 GSM3039927 SRR6831055 N paired-end root 20 days after germination 1 Zn deficient Williams 82 Transcriptomic study of soybean (Glycine max) in response to zinc deficiency Illumina HiSeq 2000 GSE104286 GSM2794349 SRR6078270 N paired-end leaf 18 days after germination 0 Pi sufficient Williams 82 Transcriptomic study of soybean (Glycine max) leaves in response to short-term phosphorus deficiency Illumina HiSeq 2000 GSE104286 GSM2794350 SRR6078271 N paired-end leaf 18 days after germination 0 Pi sufficient Williams 82 Transcriptomic study of soybean (Glycine max) leaves in response to short-term phosphorus deficiency Illumina HiSeq 2000 GSE104286 GSM2794351 SRR6078272 N paired-end leaf 18 days after germination 1 Pi deficient Williams 82 Transcriptomic study of soybean (Glycine max) leaves in response to short-term phosphorus deficiency Illumina HiSeq 2000 GSE104286 GSM2794352 SRR6078273 N paired-end leaf 18 days after germination 1 Pi deficient Williams 82 Transcriptomic study of soybean (Glycine max) leaves in response to short-term phosphorus deficiency Illumina HiSeq 2000 GSE117686 GSM3307252 SRR7601335 N paired-end unifoliolate_leaf 2 weeks 0 cold treatment 0 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307253 SRR7601336 N paired-end unifoliolate_leaf 2 weeks 0 cold treatment 0 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307254 SRR7601337 N paired-end unifoliolate_leaf 2 weeks 0 cold treatment 0 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307255 SRR7601338 N paired-end unifoliolate_leaf 2 weeks 1 cold treatment 1 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307256 SRR7601339 N paired-end unifoliolate_leaf 2 weeks 1 cold treatment 1 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307257 SRR7601340 N paired-end unifoliolate_leaf 2 weeks 1 cold treatment 1 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307258 SRR7601341 N paired-end unifoliolate_leaf 2 weeks 1 cold treatment 24 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307259 SRR7601342 N paired-end unifoliolate_leaf 2 weeks 1 cold treatment 24 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE117686 GSM3307260 SRR7601343 N paired-end unifoliolate_leaf 2 weeks 1 cold treatment 24 hour Williams 82 RNAseq data of two week-old soybean leaves response to cold stress Illumina HiSeq 2000 GSE99571 GSM2646604 SRR5639237 N single-end embryo developmental stage: cotyledon 0 Soybean Cotyledon-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646605 SRR5639238 N single-end embryo developmental stage: cotyledon 0 Soybean Cotyledon-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646606 SRR5639239 N single-end embryo developmental stage: cotyledon 0 Soybean Cotyledon-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646607 SRR5639240 N single-end embryo developmental stage: early maturation 0 Soybean Early Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646608 SRR5639241 N single-end embryo developmental stage: early maturation 0 Soybean Early Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646609 SRR5639242 N single-end embryo developmental stage: early maturation 0 Soybean Early Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646610 SRR5639243 N single-end embryo developmental stage: mid-maturation 0 Soybean Mid Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646611 SRR5639244 N single-end embryo developmental stage: mid-maturation 0 Soybean Mid Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646612 SRR5639245 N single-end embryo developmental stage: mid-maturation 0 Soybean Mid Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646613 SRR5639246 N single-end embryo developmental stage: late maturation 0 Soybean Late Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646614 SRR5639247 N single-end embryo developmental stage: late maturation 0 Soybean Late Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646615 SRR5639248 N single-end embryo developmental stage: late maturation 0 Soybean Late Maturation-stage Embryo Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646616 SRR5639249 N single-end seed developmental stage: mature, dry seed 0 Soybean Dry Seed Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646617 SRR5639250 N single-end seed developmental stage: mature, dry seed 0 Soybean Dry Seed Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646618 SRR5639251 N single-end seed developmental stage: mature, dry seed 0 Soybean Dry Seed Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646619 SRR5639252 N single-end seedling developmental stage: 8 day after seed sowing 0 Soybean Seedling 8 DAI Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646620 SRR5639253 N single-end seedling developmental stage: 8 day after seed sowing 0 Soybean Seedling 9 DAI Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99571 GSM2646621 SRR5639254 N single-end seedling developmental stage: 8 day after seed sowing 0 Soybean Seedling 10 DAI Williams 82 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean Illumina HiSeq 2000 GSE99109 GSM2633525 SRR5579276 N single-end embryo_axis 4 weeks 0 Soybean Mid-Maturation Embryo Axis Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633526 SRR5579277 N single-end embryo_axis 4 weeks 0 Soybean Mid-Maturation Embryo Axis Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633527 SRR5579278 N single-end embryo_axis 4 weeks 0 Soybean Mid-Maturation Embryo Axis Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633528 SRR5579279 N single-end cotyledon 4 weeks 0 Soybean Mid-Maturation Embryo Cotyledons Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633529 SRR5579280 N single-end cotyledon 4 weeks 0 Soybean Mid-Maturation Embryo Cotyledons Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633530 SRR5579281 N single-end cotyledon 4 weeks 0 Soybean Mid-Maturation Embryo Cotyledons Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633531 SRR5579282 N single-end seed_coat 4 weeks 0 Soybean Mid-Maturation Seed Coat Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633532 SRR5579283 N single-end seed_coat 4 weeks 0 Soybean Mid-Maturation Seed Coat Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99109 GSM2633533 SRR5579284 N single-end seed_coat 4 weeks 0 Soybean Mid-Maturation Seed Coat Williams 82 Gene Expression Changes in the Development of the Soybean Seed Mid-Maturation (B1) Stage Illumina HiSeq 2000 GSE99758 GSM2651551 SRR5655608 N single-end leaf developmental stage: V2 (18 days old) 0 none Williams 82 Transcriptomes of 102 soybean accessions Illumina HiSeq 2500 GSE99758 GSM2651591 SRR5655648 N single-end leaf developmental stage: V2 (18 days old) 0 none Williams Transcriptomes of 102 soybean accessions Illumina HiSeq 2500 GSE82240 GSM2187001 SRR3624076 N paired-end stem none 1 infection: P. sojae inoculated Williams Fine mapping and candidate gene analysis of two loci conferring resistance to Phytophthora sojae in soybean Illumina HiScanSQ GSE82240 GSM2187002 SRR3624077 N paired-end stem none 0 infection: mock-inoculated Williams Fine mapping and candidate gene analysis of two loci conferring resistance to Phytophthora sojae in soybean Illumina HiScanSQ GSE86201 GSM2297698 SRR4095538 N single-end root 7 days 0 3 and 5 days post water incubation Williams 82 Investigation of the Fusarium virguliforme transcriptomes induced during infection of soybean roots suggests that enzymes with hydrolytic activities could play a major role in root necrosis Illumina Genome Analyzer II GSE86201 GSM2297699 SRR4095539 N single-end root 7 days 0 10 and 24 days post water incubation Williams 82 Investigation of the Fusarium virguliforme transcriptomes induced during infection of soybean roots suggests that enzymes with hydrolytic activities could play a major role in root necrosis Illumina Genome Analyzer II GSE86201 GSM2297700 SRR4095540 N single-end root 7 days 1 infected by conidial spores (pooled RNA samples at 3 and 5 days post infection) Williams 82 Investigation of the Fusarium virguliforme transcriptomes induced during infection of soybean roots suggests that enzymes with hydrolytic activities could play a major role in root necrosis Illumina Genome Analyzer II GSE86201 GSM2297701 SRR4095541 N single-end root 7 days 1 infected by conidial spores (pooled RNA samples at 10 and 24 days post infection) Williams 82 Investigation of the Fusarium virguliforme transcriptomes induced during infection of soybean roots suggests that enzymes with hydrolytic activities could play a major role in root necrosis Illumina Genome Analyzer II GSE64620 GSM1575732 SRR1737979 N single-end seed generation: 4th 1 764_B1,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575733 SRR1737980 N single-end seed generation: 4th 1 764_B2,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575734 SRR1737981 N single-end seed generation: 4th 1 764_B3,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575735 SRR1737982 N single-end seed generation: 4th 1 764_H1,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575736 SRR1737983 N single-end seed generation: 4th 1 764_H2,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575737 SRR1737984 N single-end seed generation: 4th 1 764_H3,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575738 SRR1737985 N single-end seed generation: 4th 1 764_K1,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575739 SRR1737986 N single-end seed generation: 4th 1 764_K2,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575740 SRR1737987 N single-end seed generation: 4th 1 764_K3,transgene: non-toxic Staphylococcus enterotoxin B Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575741 SRR1737988 N single-end seed generation: 7th 1 ST77_D1,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575742 SRR1737989 N single-end seed generation: 7th 1 ST77_D2,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575743 SRR1737990 N single-end seed generation: 7th 1 ST77_D3,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575744 SRR1737991 N single-end seed generation: 7th 1 ST77_F1,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575745 SRR1737992 N single-end seed generation: 7th 1 ST77_F2,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575746 SRR1737993 N single-end seed generation: 7th 1 ST77_F3,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575747 SRR1737994 N single-end seed generation: 7th 1 ST77_J1,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575748 SRR1737995 N single-end seed generation: 7th 1 ST77_J2,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575749 SRR1737996 N single-end seed generation: 7th 1 ST77_J3,transgene: human thyroglobulin Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575750 SRR1737997 N single-end seed generation: 3rd 1 ST111_B1,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575751 SRR1737998 N single-end seed generation: 3rd 1 ST111_B2,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575752 SRR1737999 N single-end seed generation: 3rd 1 ST111_B3,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575753 SRR1738000 N single-end seed generation: 3rd 1 ST111_I1,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575754 SRR1738001 N single-end seed generation: 3rd 1 ST111_I2,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575755 SRR1738002 N single-end seed generation: 3rd 1 ST111_I3,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575756 SRR1738003 N single-end seed generation: 3rd 1 ST111_K1,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575757 SRR1738004 N single-end seed generation: 3rd 1 ST111_K2,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575758 SRR1738005 N single-end seed generation: 3rd 1 ST111_K3,transgene: myelin-basic protein sigma conjugate Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575759 SRR1738006 N single-end seed generation: n/a 0 WT_B1,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575760 SRR1738007 N single-end seed generation: n/a 0 WT_B2,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575761 SRR1738008 N single-end seed generation: n/a 0 WT_B3,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575762 SRR1738009 N single-end seed generation: n/a 0 WT_H1,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575763 SRR1738010 N single-end seed generation: n/a 0 WT_H2,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575764 SRR1738011 N single-end seed generation: n/a 0 WT_H3,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575765 SRR1738012 N single-end seed generation: n/a 0 WT_L1,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575766 SRR1738013 N single-end seed generation: n/a 0 WT_L2,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64620 GSM1575767 SRR1738014 N single-end seed generation: n/a 0 WT_L3,transgene: none Williams 82 Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq Illumina HiSeq 2000 GSE64665 GSM1576581 SRR1740419 N single-end root_meristematic_zone 4 days after plating 0 GmMZ1,root zone: Root meristematic zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 Seeds were sterilized and germinated on agarose-solidified MS media under constant light at 21C. GSE64665 GSM1576582 SRR1740420 N single-end root_meristematic_zone 4 days after plating 0 GmMZ2,root zone: Root meristematic zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE64665 GSM1576583 SRR1740421 N single-end root_meristematic_zone 4 days after plating 0 GmMZ3,root zone: Root meristematic zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE64665 GSM1576584 SRR1740422 N single-end root_elongation_zone 4 days after plating 0 GmEZ1,root zone: Root elongation zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE64665 GSM1576585 SRR1740423 N single-end root_elongation_zone 4 days after plating 0 GmEZ2,root zone: Root elongation zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE64665 GSM1576586 SRR1740424 N single-end root_elongation_zone 4 days after plating 0 GmEZ3,root zone: Root elongation zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE64665 GSM1576587 SRR1740425 N single-end root_differentiation_zone 4 days after plating 0 GmDZ1,root zone: Root differentiation zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE64665 GSM1576588 SRR1740426 N single-end root_differentiation_zone 4 days after plating 0 GmDZ2,root zone: Root differentiation zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE64665 GSM1576589 SRR1740427 N single-end root_differentiation_zone 4 days after plating 0 GmDZ3,root zone: Root differentiation zone Williams 82 Conserved Molecular Program for Root Development in Diverse Plants Illumina HiSeq 2000 GSE57252 GSM1377923 SRR1268082 N single-end root developmental stage: V1 stage seedlings 0 control,0h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377924 SRR1268083 N single-end root developmental stage: V1 stage seedlings 0 control,0h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377925 SRR1268084 N single-end root developmental stage: V1 stage seedlings 0 control,0h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377926 SRR1268085 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,1h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377927 SRR1268086 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,1h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377928 SRR1268087 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,1h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377929 SRR1268088 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,6h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377930 SRR1268089 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,6h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377931 SRR1268090 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,6h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377932 SRR1268091 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,12h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377933 SRR1268092 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,12h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377934 SRR1268093 N single-end root developmental stage: V1 stage seedlings 1 dehydration treatment,12h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377935 SRR1268094 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,1h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377936 SRR1268095 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,1h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377937 SRR1268096 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,1h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377938 SRR1268097 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,6h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377939 SRR1268098 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,6h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377940 SRR1268099 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,6h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377941 SRR1268100 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,12h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377942 SRR1268101 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,12h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57252 GSM1377943 SRR1268102 N single-end root developmental stage: V1 stage seedlings 1 salt treatment,12h Williams 82 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress Illumina HiSeq 2000 GSE57606 GSM1385450 SRR1284502 N single-end embryo seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385451 SRR1284504 N single-end embryo seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385452 SRR1284507 N single-end embryo seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385453 SRR1284510 N single-end embryo_axis seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper Axis-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385454 SRR1284512 N single-end embryo_axis seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper Axis-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385455 SRR1284515 N single-end embryo_axis seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper Axis-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385456 SRR1284518 N single-end cotyledon seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper Cotyledon-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385457 SRR1284519 N single-end cotyledon seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper Cotyledon-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385458 SRR1284521 N single-end cotyledon seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Embryo Proper Cotyledon-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385459 SRR1284522 N single-end endosperm seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Endosperm-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385460 SRR1284524 N single-end endosperm seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Endosperm-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385461 SRR1284525 N single-end endosperm seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Endosperm-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385462 SRR1284527 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Endothelium-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385463 SRR1284529 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Endothelium-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385464 SRR1284530 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Endothelium-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385465 SRR1284531 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Epidermis-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385466 SRR1284532 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Epidermis-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385467 SRR1284533 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Epidermis-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385468 SRR1284535 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Epidermis-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385469 SRR1284537 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Epidermis-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385470 SRR1284539 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Epidermis-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385471 SRR1284541 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Inner Integument-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385472 SRR1284542 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Inner Integument-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385473 SRR1284543 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Inner Integument-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385474 SRR1284545 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Outer Integument-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385475 SRR1284546 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Outer Integument-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385476 SRR1284547 N single-end seed_coat seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Seed Coat Outer Integument-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385477 SRR1284548 N single-end suspensor seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Suspensor-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385478 SRR1284550 N single-end suspensor seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Suspensor-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57606 GSM1385479 SRR1284551 N single-end suspensor seeds ranging 3.0-3.5mm in length 0 Soybean Cotyledon Stage Suspensor-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage Illumina HiSeq 2000 GSE57350 GSM1380799 SRR1272372 N single-end embryo seed - heart stage 0 Soybean Heart Stage Embryo Proper-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380800 SRR1272373 N single-end embryo seed - heart stage 0 Soybean Heart Stage Embryo Proper-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380801 SRR1272375 N single-end embryo seed - heart stage 0 Soybean Heart Stage Embryo Proper-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380802 SRR1272377 N single-end endosperm seed - heart stage 0 Soybean Heart Stage Endosperm-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380803 SRR1272379 N single-end endosperm seed - heart stage 0 Soybean Heart Stage Endosperm-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380804 SRR1272381 N single-end endosperm seed - heart stage 0 Soybean Heart Stage Endosperm-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380805 SRR1272383 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Endothelium-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380806 SRR1272385 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Endothelium-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380807 SRR1272387 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Endothelium-Biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380808 SRR1272388 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Epidermis-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380809 SRR1272390 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Epidermis-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380810 SRR1272391 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Epidermis-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380811 SRR1272393 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Hilum-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380812 SRR1272395 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Hilum-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380813 SRR1272397 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Hilum-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380814 SRR1272399 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Inner Integument-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380815 SRR1272401 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Inner Integument-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380816 SRR1272403 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Inner Integument-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380817 SRR1272404 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Outer Integument-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380818 SRR1272406 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Outer Integument-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380819 SRR1272408 N single-end seed_coat seed - heart stage 0 Soybean Heart Stage Seed Coat Outer Integument-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380820 SRR1272410 N single-end suspensor seed - heart stage 0 Soybean Heart Stage Suspensor-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380821 SRR1272412 N single-end suspensor seed - heart stage 0 Soybean Heart Stage Suspensor-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57350 GSM1380822 SRR1272413 N single-end suspensor seed - heart stage 0 Soybean Heart Stage Suspensor-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage Illumina HiSeq 2000 GSE57349 GSM1380774 SRR1272329 N single-end embryo seed - globular stage 0 Soybean Globular Stage Embryo Proper-Biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380775 SRR1272330 N single-end embryo seed - globular stage 0 Soybean Globular Stage Embryo Proper-Biological replicate 5 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380776 SRR1272332 N single-end embryo seed - globular stage 0 Soybean Globular Stage Embryo Proper-Biological replicate 6 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380777 SRR1272334 N single-end endosperm seed - globular stage 0 Soybean Globular Stage Endosperm-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380778 SRR1272336 N single-end endosperm seed - globular stage 0 Soybean Globular Stage Endosperm-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380779 SRR1272338 N single-end endosperm seed - globular stage 0 Soybean Globular Stage Endosperm-Biological replicate 5 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380780 SRR1272340 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Endothelium-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380781 SRR1272342 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Endothelium-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380782 SRR1272343 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Endothelium-Biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380783 SRR1272345 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Epidermis-Biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380784 SRR1272347 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Epidermis-Biological replicate 5 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380785 SRR1272349 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Epidermis-Biological replicate 6 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380786 SRR1272350 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Hilum-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380787 SRR1272352 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Hilum-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380788 SRR1272353 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Hilum-Biological replicate 5 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380789 SRR1272354 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Inner Integument-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380790 SRR1272356 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Inner Integument-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380791 SRR1272358 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Inner Integument-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380792 SRR1272360 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Inner Integument-Biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380793 SRR1272361 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Outer Integument-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380794 SRR1272363 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Outer Integument-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380795 SRR1272365 N single-end seed_coat seed - globular stage 0 Soybean Globular Stage Seed Coat Outer Integument-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380796 SRR1272367 N single-end suspensor seed - globular stage 0 Soybean Globular Stage Suspensor-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380797 SRR1272368 N single-end suspensor seed - globular stage 0 Soybean Globular Stage Suspensor-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE57349 GSM1380798 SRR1272370 N single-end suspensor seed - globular stage 0 Soybean Globular Stage Suspensor-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Globular Stage Illumina HiSeq 2000 GSE46096 GSM1398252 SRR1298602 N single-end embryo_axis None 0 Soybean Early Maturation Axis Epidermis- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398253 SRR1298603 N single-end embryo_axis None 0 Soybean Early Maturation Axis Epidermis- biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398254 SRR1298605 N single-end embryo_axis None 0 Soybean Early Maturation Axis Epidermis- biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398255 SRR1298607 N single-end plumule None 0 Soybean Early Maturation Axis Plumules- biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398256 SRR1298612 N single-end plumule None 0 Soybean Early Maturation Axis Plumules- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398257 SRR1298617 N single-end plumule None 0 Soybean Early Maturation Axis Plumules- biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398258 SRR1298622 N single-end root_tip None 0 Soybean Early Maturation Axis Root Tip- biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398259 SRR1298627 N single-end embryo_axis None 0 Soybean Early Maturation Axis Shoot Apical Meristem- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398260 SRR1298629 N single-end embryo_axis None 0 Soybean Early Maturation Axis Shoot Apical Meristem- biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398261 SRR1298631 N single-end embryo_axis None 0 Soybean Early Maturation Axis Shoot Apical Meristem- biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398262 SRR1298633 N single-end embryo_axis None 0 Soybean Early Maturation Axis Stele- biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398263 SRR1298638 N single-end embryo_axis None 0 Soybean Early Maturation Axis Stele- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398264 SRR1298644 N single-end embryo_axis None 0 Soybean Early Maturation Axis Stele- biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398265 SRR1298647 N single-end embryo_axis None 0 Soybean Early Maturation Axis Vasculature- biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398266 SRR1298650 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Abaxial Parenchyma- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398267 SRR1298652 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Abaxial Parenchyma- biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398268 SRR1298654 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Abaxial Parenchyma- biological replicate 5 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398269 SRR1298657 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Adaxial Epidermis- biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398270 SRR1298659 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Adaxial Epidermis- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398271 SRR1298662 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Adaxial Epidermis- biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398272 SRR1298665 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Adaxial Parenchyma- biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398273 SRR1298669 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Adaxial Parenchyma- biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398274 SRR1298673 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Adaxial Parenchyma- biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398275 SRR1298676 N single-end cotyledon None 0 Soybean Early Maturation Cotyledon Vasculature- biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398276 SRR1298678 N single-end endosperm None 0 Soybean Early Maturation Endosperm- biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398277 SRR1298681 N single-end endosperm None 0 Soybean Early Maturation Endosperm- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398278 SRR1298684 N single-end seed_coat None 0 Soybean Early Maturation Seed Coat Palisade- biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398279 SRR1298687 N single-end seed_coat None 0 Soybean Early Maturation Seed Coat Parenchyma- biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1398280 SRR1298689 N single-end seed_coat None 0 Soybean Early Maturation Seed Coat Parenchyma- biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE29163 GSM2734729 SRR5906386 N single-end seed mid-maturation-stage embryos 0 Soybean seeds containing mid-maturation-stage embryos Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM2734730 SRR5906387 N single-end seed late-maturation-stage embryos 0 Soybean seeds containing late-maturation-stage embryos Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE153951 GSM4659041 SRR12164947 N single-end leaf None 0 control Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659042 SRR12164948 N single-end leaf None 0 control Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659043 SRR12164949 N single-end leaf None 0 control Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659044 SRR12164950 N single-end leaf None 1 water deficit Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659045 SRR12164951 N single-end leaf None 1 water deficit Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659046 SRR12164952 N single-end leaf None 1 water deficit Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659047 SRR12164953 N single-end leaf None 1 heat stress Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659048 SRR12164954 N single-end leaf None 1 heat stress Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659049 SRR12164955 N single-end leaf None 1 heat stress Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659050 SRR12164956 N single-end leaf None 1 water deficit and heat stress Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659051 SRR12164957 N single-end leaf None 1 water deficit and heat stress Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE153951 GSM4659052 SRR12164958 N single-end leaf None 1 water deficit and heat stress Magellan,PI595362 Combination of drought and heat in soybean plants Illumina NovaSeq 6000 GSE159910 GSM4850121 SRR12883241 N paired-end leaf vegetative stage three (V3; 20 days after germination, DAG) 0 Wild Type 20 days 1 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850122 SRR12883242 N paired-end leaf vegetative stage three (V3; 20 days after germination, DAG) 0 Wild Type 20 days 2 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850123 SRR12883243 N paired-end leaf vegetative stage three (V3; 20 days after germination, DAG) 0 Wild Type 20 days 3 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850124 SRR12883244 N paired-end leaf reproductive stage six (R6; 80 DAG) 0 Wild Type 80 days 1 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850125 SRR12883245 N paired-end leaf reproductive stage six (R6; 80 DAG) 0 Wild Type 80 days 2 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850126 SRR12883246 N paired-end leaf reproductive stage six (R6; 80 DAG) 0 Wild Type 80 days 3 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850127 SRR12883247 Y paired-end leaf vegetative stage three (V3; 20 days after germination, DAG) 1 GmNAC81 20 days 1 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850128 SRR12883248 Y paired-end leaf vegetative stage three (V3; 20 days after germination, DAG) 1 GmNAC81 20 days 2 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850129 SRR12883249 Y paired-end leaf vegetative stage three (V3; 20 days after germination, DAG) 1 GmNAC81 20 days 3 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850130 SRR12883250 Y paired-end leaf reproductive stage six (R6; 80 DAG) 1 GmNAC81 80 days 1 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850131 SRR12883251 Y paired-end leaf reproductive stage six (R6; 80 DAG) 1 GmNAC81 80 days 2 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE159910 GSM4850132 SRR12883252 Y paired-end leaf reproductive stage six (R6; 80 DAG) 1 GmNAC81 80 days 3 None GmNAC81 involved in leaf senecence and drought stress Illumina HiSeq 2500 GSE146287 GSM4376739 SRR11219633 N single-end seed_coat Extended hilum region of seed coats (10-25 mg seed weight stage) 1 SC Clark 63 (UC7_PI548532) 10-25 mg rep 1 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376740 SRR11219634 N single-end seed_coat Extended hilum region of seed coats (10-25 mg seed weight stage) 1 SC Clark 63 (UC7_PI548532) 10-25 mg rep 2 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376741 SRR11219635 Y single-end seed_coat Extended hilum region of seed coats (10-25 mg seed weight stage) 1 SC Minute hilum (mi) isoline (UC413_ PI547628) 10-25 mg rep 1 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376742 SRR11219636 Y single-end seed_coat Extended hilum region of seed coats (10-25 mg seed weight stage) 1 SC Minute hilum (mi) isoline (UC413_ PI547628) 10-25 mg rep 2 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376743 SRR11219637 N single-end seed_coat Extended hilum region of seed coats (25-50 mg seed weight stage) 1 SC Clark 63 (UC7_PI548532) 25-50 mg rep 1 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376744 SRR11219638 N single-end seed_coat Extended hilum region of seed coats (25-50 mg seed weight stage) 1 SC Clark 63 (UC7_PI548532) 25-50 mg rep 2 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376745 SRR11219639 Y single-end seed_coat Extended hilum region of seed coats (25-50 mg seed weight stage) 1 SC Minute hilum (mi) isoline (UC413_ PI547628) 25-50 mg rep 1 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376746 SRR11219640 Y single-end seed_coat Extended hilum region of seed coats (25-50 mg seed weight stage) 1 SC Minute hilum (mi) isoline (UC413_ PI547628) 25-50 mg rep 2 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376747 SRR11219641 N single-end seed_coat Extended hilum region of seed coats (50-100 mg seed weight stage) 1 SC Clark 63 (UC7_PI548532) 50-100 mg rep 1 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376748 SRR11219642 N single-end seed_coat Extended hilum region of seed coats (50-100 mg seed weight stage) 1 SC Clark 63 (UC7_PI548532) 50-100 mg rep 2 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376749 SRR11219643 Y single-end seed_coat Extended hilum region of seed coats (50-100 mg seed weight stage) 1 SC Minute hilum (mi) isoline (UC413_ PI547628) 50-100 mg rep 1 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376750 SRR11219644 Y single-end seed_coat Extended hilum region of seed coats (50-100 mg seed weight stage) 1 SC Minute hilum (mi) isoline (UC413_ PI547628) 50-100 mg rep 2 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376751 SRR11219645 N single-end seed_coat Extended hilum region of seed coats (100-200 mg seed weight stage) 1 SC Clark 63 (UC7_PI548532) 100-200 mg rep 1 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376752 SRR11219646 Y single-end seed_coat Extended hilum region of seed coats (100-200 mg seed weight stage) 1 SC Minute hilum (mi) isoline (UC413_ PI547628) 100-200 mg rep 1 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376753 SRR11219647 N single-end seed_coat Whole seed coats (10-25 mg seed weight stage) 0 WS Clark 63 (UC7_PI548532) 10-25 mg rep 1 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376754 SRR11219648 Y single-end seed_coat Whole seed coats (10-25 mg seed weight stage) 0 WS Minute hilum (mi) isoline (UC413_ PI547628) 10-25 mg rep 1 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376755 SRR11219649 N single-end seed_coat Whole seed coats (25-50 mg seed weight stage) 0 WS Clark 63 (UC7_PI548532) 25-50 mg rep 1 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376756 SRR11219650 Y single-end seed_coat Whole seed coats (25-50 mg seed weight stage) 0 WS Minute hilum (mi) isoline (UC413_ PI547628) 25-50 mg rep 1 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376757 SRR11219651 N single-end seed_coat Whole seed coats (50-100 mg seed weight stage) 0 WS Clark 63 (UC7_PI548532) 50-100 mg rep 1 UC7_PI548532 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE146287 GSM4376758 SRR11219652 Y single-end seed_coat Whole seed coats (50-100 mg seed weight stage) 0 WS Minute hilum (mi) isoline (UC413_ PI547628) 50-100 mg rep 1 UC413_ PI547628 Overexpression of an ethylene-forming ACC Oxidase (ACO) gene precedes the Minute Hilum seed coat phenotype in Glycine max Illumina HiSeq 2000 GSE158762 GSM4809930 SRR12743441 N single-end leaf flowering 0 HN44-1 None Transcription analysis of different water use efficiency genotypes in soybean leaf BGISEQ-500 GSE158762 GSM4809931 SRR12743442 N single-end leaf flowering 0 HN44-2 None Transcription analysis of different water use efficiency genotypes in soybean leaf BGISEQ-500 GSE158762 GSM4809932 SRR12743443 N single-end leaf flowering 0 HN44-3 None Transcription analysis of different water use efficiency genotypes in soybean leaf BGISEQ-500 GSE158762 GSM4809933 SRR12743444 N single-end leaf flowering 0 SN14-1 None Transcription analysis of different water use efficiency genotypes in soybean leaf BGISEQ-500 GSE158762 GSM4809934 SRR12743445 N single-end leaf flowering 0 SN14-2 None Transcription analysis of different water use efficiency genotypes in soybean leaf BGISEQ-500 GSE158762 GSM4809935 SRR12743446 N single-end leaf flowering 0 SN14-3 None Transcription analysis of different water use efficiency genotypes in soybean leaf BGISEQ-500 GSE141720 GSM4212367 SRR10640786 N paired-end leaf 24 hours after infestation 0 24 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212368 SRR10640787 N paired-end leaf 24 hours after infestation 0 24 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212369 SRR10640788 N paired-end leaf 24 hours after infestation 0 24 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212370 SRR10640789 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212371 SRR10640790 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212372 SRR10640791 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212373 SRR10640792 N paired-end leaf 48 hours after infestation 0 48 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212374 SRR10640793 N paired-end leaf 48 hours after infestation 0 48 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212375 SRR10640794 N paired-end leaf 48 hours after infestation 0 48 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212376 SRR10640795 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212377 SRR10640796 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212378 SRR10640797 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212379 SRR10640798 N paired-end leaf 96 hours after infestation 0 96 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212380 SRR10640799 N paired-end leaf 96 hours after infestation 0 96 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212381 SRR10640800 N paired-end leaf 96 hours after infestation 0 96 hours mock Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212382 SRR10640801 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212383 SRR10640802 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212384 SRR10640803 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation Dongnong47_susceptible A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212385 SRR10640804 N paired-end leaf 24 hours after infestation 0 24 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212386 SRR10640805 N paired-end leaf 24 hours after infestation 0 24 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212387 SRR10640806 N paired-end leaf 24 hours after infestation 0 24 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212388 SRR10640807 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212389 SRR10640808 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212390 SRR10640809 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212391 SRR10640810 N paired-end leaf 48 hours after infestation 0 48 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212392 SRR10640811 N paired-end leaf 48 hours after infestation 0 48 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212393 SRR10640812 N paired-end leaf 48 hours after infestation 0 48 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212394 SRR10640813 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212395 SRR10640814 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212396 SRR10640815 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212397 SRR10640816 N paired-end leaf 96 hours after infestation 0 96 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212398 SRR10640817 N paired-end leaf 96 hours after infestation 0 96 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212399 SRR10640818 N paired-end leaf 96 hours after infestation 0 96 hours mock P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212400 SRR10640819 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212401 SRR10640820 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212402 SRR10640821 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation P203_antixenotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212403 SRR10640822 N paired-end leaf 24 hours after infestation 0 24 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212404 SRR10640823 N paired-end leaf 24 hours after infestation 0 24 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212405 SRR10640824 N paired-end leaf 24 hours after infestation 0 24 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212406 SRR10640825 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212407 SRR10640826 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212408 SRR10640827 N paired-end leaf 24 hours after infestation 1 24 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212409 SRR10640828 N paired-end leaf 48 hours after infestation 0 48 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212410 SRR10640829 N paired-end leaf 48 hours after infestation 0 48 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212411 SRR10640830 N paired-end leaf 48 hours after infestation 0 48 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212412 SRR10640831 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212413 SRR10640832 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212414 SRR10640833 N paired-end leaf 48 hours after infestation 1 48 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212415 SRR10640834 N paired-end leaf 96 hours after infestation 0 96 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212416 SRR10640835 N paired-end leaf 96 hours after infestation 0 96 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212417 SRR10640836 N paired-end leaf 96 hours after infestation 0 96 hours mock P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212418 SRR10640837 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212419 SRR10640838 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE141720 GSM4212420 SRR10640839 N paired-end leaf 96 hours after infestation 1 96 hours after aphid infestation P746_antibiotic A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean Illumina HiSeq 2000 GSE131686 GSM3813939 SRR9113321 N paired-end root_hair H2O treatment 24h 0 H2O treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813940 SRR9113322 N paired-end root_hair H2O treatment 24h 0 H2O treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813941 SRR9113323 N paired-end root_hair H2O treatment 24h 0 H2O treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813942 SRR9113324 N paired-end root_hair H2O treatment 24h 0 H2O treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813943 SRR9113325 N paired-end root_hair wall glucan elicitor (WGE) treatment 24h 1 wall glucan elicitor (WGE) treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813944 SRR9113326 N paired-end root_hair wall glucan elicitor (WGE) treatment 24h 1 wall glucan elicitor (WGE) treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813945 SRR9113327 N paired-end root_hair wall glucan elicitor (WGE) treatment 24h 1 wall glucan elicitor (WGE) treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813946 SRR9113328 N paired-end root_hair wall glucan elicitor (WGE) treatment 24h 1 wall glucan elicitor (WGE) treatment 24h Williams 82 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813947 SRR9113329 N paired-end seed H2O treatment 48h 0 H2O treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813948 SRR9113330 N paired-end seed H2O treatment 48h 0 H2O treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813949 SRR9113331 N paired-end seed H2O treatment 48h 0 H2O treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813950 SRR9113332 N paired-end seed H2O treatment 48h 0 H2O treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813951 SRR9113333 N paired-end seed wall glucan elicitor (WGE) treatment 48h 1 wall glucan elicitor (WGE) treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813952 SRR9113334 N paired-end seed wall glucan elicitor (WGE) treatment 48h 1 wall glucan elicitor (WGE) treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813953 SRR9113335 N paired-end seed wall glucan elicitor (WGE) treatment 48h 1 wall glucan elicitor (WGE) treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE131686 GSM3813954 SRR9113336 N paired-end seed wall glucan elicitor (WGE) treatment 48h 1 wall glucan elicitor (WGE) treatment 48h Harosoy63 Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae Illumina HiSeq 1500 GSE135971 GSM4038723 SRR9995602 N paired-end root 15 days 0 15 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038724 SRR9995603 N paired-end root 15 days 0 15 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038725 SRR9995604 N paired-end root 15 days 0 15 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038726 SRR9995605 N paired-end root 25 days 0 25 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038727 SRR9995606 N paired-end root 25 days 0 25 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038728 SRR9995607 N paired-end root 25 days 0 25 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038729 SRR9995608 N paired-end root 39 days 0 39 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038730 SRR9995609 N paired-end root 39 days 0 39 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038731 SRR9995610 N paired-end root 39 days 0 39 days_mocktissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038732 SRR9995611 N paired-end nodule 15 days 1 15 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038733 SRR9995612 N paired-end nodule 15 days 1 15 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038734 SRR9995613 N paired-end nodule 15 days 1 15 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038735 SRR9995614 N paired-end nodule 25 days 1 25 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038736 SRR9995615 N paired-end nodule 25 days 1 25 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038737 SRR9995616 N paired-end nodule 25 days 1 25 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038738 SRR9995617 N paired-end nodule 39 days 1 39 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038739 SRR9995618 N paired-end nodule 39 days 1 39 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE135971 GSM4038740 SRR9995619 N paired-end nodule 39 days 1 39 days_treattissue Williams 82 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity Illumina HiSeq 2500 GSE150157 GSM4525225 SRR11741785 N single-end flower None 0 flower None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525226 SRR11741786 N single-end leaf None 0 young leaf None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525227 SRR11741787 N single-end seed None 0 seed early maturity stage 1 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525228 SRR11741788 N single-end seed None 0 seed early maturity stage 2 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525229 SRR11741789 N single-end seed None 0 seed cotyledon stage None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525230 SRR11741790 N single-end pod None 0 one cm pod None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525231 SRR11741791 N single-end pod None 0 pod shell 10DAF None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525232 SRR11741792 N single-end pod None 0 pod shell 14DAF None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525233 SRR11741793 N single-end nodule None 0 nodule None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525234 SRR11741794 N single-end root None 0 root None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525235 SRR11741795 N single-end anther None 0 anther, rep 1 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525236 SRR11741796 N single-end ovary None 0 ovary, rep 1 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525237 SRR11741797 N single-end flower None 0 unopened flower, rep 1 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525238 SRR11741798 N single-end flower None 0 open flower, rep 1 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525239 SRR11741799 N single-end leaf None 0 soybean leaf V3 rep1 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE150157 GSM4525240 SRR11741800 N single-end leaf None 0 soybean leaf V3 rep2 None Characterization of RNAs in soybean (Glycine max) Illumina HiSeq 2500 GSE137263 GSM4074067 SRR10098755 N paired-end leaf 0 hours 0 0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074068 SRR10098756 N paired-end leaf 0 hours 0 0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074069 SRR10098757 N paired-end leaf 2 hours 1 2 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074070 SRR10098758 N paired-end leaf 2 hours 1 2 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074071 SRR10098759 N paired-end leaf 4 hours 1 4 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074072 SRR10098760 N paired-end leaf 4 hours 1 4 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074073 SRR10098761 N paired-end leaf 6 hours 1 6 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074074 SRR10098762 N paired-end leaf 6 hours 1 6 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074075 SRR10098763 N paired-end leaf 8 hours 1 8 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074076 SRR10098764 N paired-end leaf 8 hours 1 8 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled L29 (Rsv3-genotype resistant ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074077 SRR10098765 N paired-end leaf 0 hours 0 0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074078 SRR10098766 N paired-end leaf 0 hours 0 0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074079 SRR10098767 N paired-end leaf 2 hours 1 2 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074080 SRR10098768 N paired-end leaf 2 hours 1 2 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074081 SRR10098769 N paired-end leaf 4 hours 1 4 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074082 SRR10098770 N paired-end leaf 4 hours 1 4 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074083 SRR10098771 N paired-end leaf 6 hours 1 6 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074084 SRR10098772 N paired-end leaf 6 hours 1 6 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074085 SRR10098773 N paired-end leaf 8 hours 1 8 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE137263 GSM4074086 SRR10098774 N paired-end leaf 8 hours 1 8 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled Williams 82 (rsv3-genotype susceptible ) A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus Illumina HiSeq 4000 GSE130138 GSM3732705 SRR8937687 N paired-end root 8 days 0 noninfected TN09-16(Soybean cyst nematode susceptible) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732706 SRR8937688 N paired-end root 8 days 0 noninfected TN09-16(Soybean cyst nematode susceptible) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732707 SRR8937689 N paired-end root 8 days 0 noninfected TN09-16(Soybean cyst nematode susceptible) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732708 SRR8937690 N paired-end root 8 days 1 soybean cyst nematode(SCN)_infected TN09-16(Soybean cyst nematode susceptible) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732709 SRR8937691 N paired-end root 8 days 1 soybean cyst nematode(SCN)_infected TN09-16(Soybean cyst nematode susceptible) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732710 SRR8937692 N paired-end root 8 days 1 soybean cyst nematode(SCN)_infected TN09-16(Soybean cyst nematode susceptible) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732711 SRR8937693 N paired-end root 8 days 0 noninfected TN09-29(Soybean cyst nematode resistant) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732712 SRR8937694 N paired-end root 8 days 0 noninfected TN09-29(Soybean cyst nematode resistant) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732713 SRR8937695 N paired-end root 8 days 0 noninfected TN09-29(Soybean cyst nematode resistant) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732714 SRR8937696 N paired-end root 8 days 1 soybean cyst nematode(SCN)_infected TN09-29(Soybean cyst nematode resistant) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732715 SRR8937697 N paired-end root 8 days 1 soybean cyst nematode(SCN)_infected TN09-29(Soybean cyst nematode resistant) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE130138 GSM3732716 SRR8937698 N paired-end root 8 days 1 soybean cyst nematode(SCN)_infected TN09-29(Soybean cyst nematode resistant) Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism [RNA-seq] Illumina HiSeq 2500 GSE139303 GSM4137628 SRR10337249 N paired-end leaf V1 stage 0 mock treated with MgCl2 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137629 SRR10337250 N paired-end leaf V1 stage 0 mock treated with MgCl2 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137630 SRR10337251 N paired-end leaf V1 stage 0 mock treated with MgCl2 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137631 SRR10337252 N paired-end leaf V1 stage 1 sample treated with Bradyrhizobium japonicum USDA122 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137632 SRR10337253 N paired-end leaf V1 stage 1 sample treated with Bradyrhizobium japonicum USDA122 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137633 SRR10337254 N paired-end leaf V1 stage 1 sample treated with Bradyrhizobium japonicum USDA122 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137634 SRR10337255 N paired-end leaf V1 stage 1 sample treated with Sinorhizobium fredii USDA257 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137635 SRR10337256 N paired-end leaf V1 stage 1 sample treated with Sinorhizobium fredii USDA257 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE139303 GSM4137636 SRR10337257 N paired-end leaf V1 stage 1 sample treated with Sinorhizobium fredii USDA257 Soybean (Glycine max (L.) Merr.) L76-1988 RNA-seq analysis of distal gene expression changes during nodulation Illumina HiSeq 3000 GSE94228 GSM2471308 SRR5210841 N paired-end unifoliolate_leaf 11-day old 0 ZT0_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471309 SRR5210844 N paired-end unifoliolate_leaf 11-day old 1 ZT4_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471310 SRR5210847 N paired-end unifoliolate_leaf 11-day old 1 ZT8_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471311 SRR5210850 N paired-end unifoliolate_leaf 11-day old 1 ZT12_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471312 SRR5210853 N paired-end unifoliolate_leaf 11-day old 1 ZT16_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471313 SRR5210856 N paired-end unifoliolate_leaf 11-day old 1 ZT20_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471314 SRR5210859 N paired-end unifoliolate_leaf 11-day old 1 ZT24_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471315 SRR5210862 N paired-end unifoliolate_leaf 11-day old 1 ZT28_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471316 SRR5210865 N paired-end unifoliolate_leaf 11-day old 1 ZT32_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471317 SRR5210868 N paired-end unifoliolate_leaf 11-day old 1 ZT36_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471318 SRR5210871 N paired-end unifoliolate_leaf 11-day old 1 ZT40_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471319 SRR5210874 N paired-end unifoliolate_leaf 11-day old 1 ZT44_rep1 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471320 SRR5210877 N paired-end unifoliolate_leaf 11-day old 0 ZT0_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471321 SRR5210880 N paired-end unifoliolate_leaf 11-day old 1 ZT4_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471322 SRR5210883 N paired-end unifoliolate_leaf 11-day old 1 ZT8_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471323 SRR5210886 N paired-end unifoliolate_leaf 11-day old 1 ZT12_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471324 SRR5210889 N paired-end unifoliolate_leaf 11-day old 1 ZT16_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471325 SRR5210892 N paired-end unifoliolate_leaf 11-day old 1 ZT20_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471326 SRR5210895 N paired-end unifoliolate_leaf 11-day old 1 ZT24_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471327 SRR5210898 N paired-end unifoliolate_leaf 11-day old 1 ZT28_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471328 SRR5210901 N paired-end unifoliolate_leaf 11-day old 1 ZT32_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471329 SRR5210904 N paired-end unifoliolate_leaf 11-day old 1 ZT36_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471330 SRR5210907 N paired-end unifoliolate_leaf 11-day old 1 ZT40_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471331 SRR5210910 N paired-end unifoliolate_leaf 11-day old 1 ZT44_rep2 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471332 SRR5210913 N paired-end unifoliolate_leaf 11-day old 0 ZT0_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471333 SRR5210916 N paired-end unifoliolate_leaf 11-day old 1 ZT4_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471334 SRR5210919 N paired-end unifoliolate_leaf 11-day old 1 ZT8_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471335 SRR5210922 N paired-end unifoliolate_leaf 11-day old 1 ZT12_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471336 SRR5210925 N paired-end unifoliolate_leaf 11-day old 1 ZT16_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471337 SRR5210928 N paired-end unifoliolate_leaf 11-day old 1 ZT20_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471338 SRR5210931 N paired-end unifoliolate_leaf 11-day old 1 ZT24_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471339 SRR5210934 N paired-end unifoliolate_leaf 11-day old 1 ZT28_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471340 SRR5210937 N paired-end unifoliolate_leaf 11-day old 1 ZT32_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471341 SRR5210940 N paired-end unifoliolate_leaf 11-day old 1 ZT36_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471342 SRR5210943 N paired-end unifoliolate_leaf 11-day old 1 ZT40_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE94228 GSM2471343 SRR5210946 N paired-end unifoliolate_leaf 11-day old 1 ZT44_rep3 Williams 82 Circadian transcriptome of soybean unifoliolate leaves Illumina HiSeq 4000 GSE123655 GSM3508915 SRR8312553 N single-end cotyledon 5-6mg 0 cotyledon from 5-6mg immature seeds Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508916 SRR8312554 N single-end cotyledon 200-300mg desiccating 0 Cotyledon without embryo axis from 200-300 mg yellow, desiccating seed Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508917 SRR8312555 N single-end cotyledon Mature dry seed 0 Cotyledon from mature dry seed Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508918 SRR8312556 N single-end embryo_axis 300-400mg desiccating 0 embryo axis dissected from 300-400 mg yellow, desiccating seed Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508919 SRR8312557 N single-end embryo_axis 200-300mg desiccating 0 embryo axis dissected from 200-300 mg yellow, desiccating seed Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508920 SRR8312558 N single-end seed_coat 200-300mg desiccating 0 seed coat dissected from 200-300 mg yellow desiccating seed Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508921 SRR8312559 N single-end seed_coat Mature dry seed 0 seed coat dissected from mature dry seed Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508922 SRR8312560 N single-end seed_coat 5-6mg 0 seed coat dissected from 5-6mg immature seed Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508924 SRR8312561 N single-end root 5 days 0 seedling roots from 5 day greenhouse grown seedlings Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE123655 GSM3508925 SRR8312562 N single-end leaf Adult 0 1-1.5 inch rolled (furled) trifoliates from adult plants Williams (PI548631) Williams RNA-Seq Samples from Various Organ and Developmental Stages Illumina HiSeq 2000 GSE118749 GSM3346370 SRR7718941 N single-end root_hair 276 hours after sowing 0 root hair cells_276 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. Illumina HiSeq 2000 GSE118749 GSM3346371 SRR7718942 N single-end root_hair 276 hours after sowing 0 root hair cells_276 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. Illumina HiSeq 2000 GSE118749 GSM3346372 SRR7718943 N single-end root_hair 276 hours after sowing 0 root hair cells_276 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. NextSeq 500 GSE118749 GSM3346373 SRR7718944 N single-end root_hair 288 hours after sowing 0 root hair cells_288 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. Illumina HiSeq 2000 GSE118749 GSM3346374 SRR7718945 N single-end root_hair 288 hours after sowing 0 root hair cells_288 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. Illumina HiSeq 2000 GSE118749 GSM3346375 SRR7718946 N single-end root_hair 288 hours after sowing 0 root hair cells_288 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. NextSeq 500 GSE118749 GSM3346376 SRR7718947 N single-end root_hair 312 hours after sowing 0 root hair cells_312 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. Illumina HiSeq 2000 GSE118749 GSM3346377 SRR7718948 N single-end root_hair 312 hours after sowing 0 root hair cells_312 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. Illumina HiSeq 2000 GSE118749 GSM3346378 SRR7718949 N single-end root_hair 312 hours after sowing 0 root hair cells_312 hrs after sowing Williams 82 Characterization of the transcriptional changes during soybean root hair cell development. NextSeq 500 GSE93322 GSM2451227 SRR5163161 N single-end seedling 2-week old 0 WT,mock treatment for 6 hrs GmSIN1 wildtype Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE93322 GSM2451228 SRR5163162 N single-end seedling 2-week old 0 WT,mock treatment for 6 hrs GmSIN1 wildtype Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE93322 GSM2451229 SRR5163163 Y single-end seedling 2-week old 1 GmSIN1 OE,mock treatment for 6 hrs GmSIN1 over-expression Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE93322 GSM2451230 SRR5163164 Y single-end seedling 2-week old 1 GmSIN1 OE,mock treatment for 6 hrs GmSIN1 over-expression Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE93322 GSM2451231 SRR5163165 N single-end seedling 2-week old 1 WT NaCl,150 mM NaCl treatment for 6 hrs GmSIN1 wildtype Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE93322 GSM2451232 SRR5163166 N single-end seedling 2-week old 1 WT NaCl,150 mM NaCl treatment for 6 hrs GmSIN1 wildtype Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE93322 GSM2451233 SRR5163167 Y single-end seedling 2-week old 1 GmSIN1 OE NaCl,150 mM NaCl treatment for 6 hrs GmSIN1 over-expression Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE93322 GSM2451234 SRR5163168 Y single-end seedling 2-week old 1 GmSIN1 OE NaCl,150 mM NaCl treatment for 6 hrs GmSIN1 over-expression Transgenic and conventional cultivar comparison in response to salt stress Illumina HiSeq 2000 GSE133574 GSM3912455 SRR9622344 N paired-end root 30 hours 0 wild type Williams 82 Dynamic changes in genome-wide histone methylation and gene expression of soybean roots in response to salt stress (RNA-seq dataset) Illumina MiSeq GSE133574 GSM3912456 SRR9622345 N paired-end root 30 hours 0 wild type Williams 82 Dynamic changes in genome-wide histone methylation and gene expression of soybean roots in response to salt stress (RNA-seq dataset) Illumina MiSeq GSE133574 GSM3912457 SRR9622346 N paired-end root 30 hours 0 wild type Williams 82 Dynamic changes in genome-wide histone methylation and gene expression of soybean roots in response to salt stress (RNA-seq dataset) Illumina MiSeq GSE133574 GSM3912458 SRR9622347 N paired-end root 30 hours 1 salt-treated Williams 82 Dynamic changes in genome-wide histone methylation and gene expression of soybean roots in response to salt stress (RNA-seq dataset) Illumina MiSeq GSE133574 GSM3912459 SRR9622348 N paired-end root 30 hours 1 salt-treated Williams 82 Dynamic changes in genome-wide histone methylation and gene expression of soybean roots in response to salt stress (RNA-seq dataset) Illumina MiSeq GSE133574 GSM3912460 SRR9622349 N paired-end root 30 hours 1 salt-treated Williams 82 Dynamic changes in genome-wide histone methylation and gene expression of soybean roots in response to salt stress (RNA-seq dataset) Illumina MiSeq GSE130010 GSM3729240 SRR8926860 N paired-end pod Pods after 18 days flowering 0 High pod shattering force soybean G1_015 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729241 SRR8926861 N paired-end pod Pods after 18 days flowering 0 High pod shattering force soybean G1_018 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729242 SRR8926862 N paired-end pod Pods after 18 days flowering 0 High pod shattering force soybean G1_044 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729243 SRR8926863 N paired-end pod Pods after 18 days flowering 0 High pod shattering force soybean G1_060 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729244 SRR8926864 N paired-end pod Pods after 18 days flowering 0 High pod shattering force soybean G1_071 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729245 SRR8926865 N paired-end pod Pods after 18 days flowering 1 Low pod shattering force soybean G2_038 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729246 SRR8926866 N paired-end pod Pods after 18 days flowering 1 Low pod shattering force soybean G2_055 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729247 SRR8926867 N paired-end pod Pods after 18 days flowering 1 Low pod shattering force soybean G2_072 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729248 SRR8926868 N paired-end pod Pods after 18 days flowering 1 Low pod shattering force soybean G2_092 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE130010 GSM3729249 SRR8926869 N paired-end pod Pods after 18 days flowering 1 Low pod shattering force soybean G2_109 Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean Illumina HiSeq 2500 GSE129320 GSM3704502 SRR8847715 N single-end root None 1 low pH,pH=4.2 None Complex regulatory mechanisms underlying mineral nutrient acquisition in soybean roots responsive to low pH stress BGISEQ-500 GSE129320 GSM3704503 SRR8847716 N single-end root None 1 low pH,pH=4.2 None Complex regulatory mechanisms underlying mineral nutrient acquisition in soybean roots responsive to low pH stress BGISEQ-500 GSE129320 GSM3704504 SRR8847717 N single-end root None 1 low pH,pH=4.2 None Complex regulatory mechanisms underlying mineral nutrient acquisition in soybean roots responsive to low pH stress BGISEQ-500 GSE129320 GSM3704505 SRR8847718 N single-end root None 0 high pH,pH=5.8 None Complex regulatory mechanisms underlying mineral nutrient acquisition in soybean roots responsive to low pH stress BGISEQ-500 GSE129320 GSM3704506 SRR8847719 N single-end root None 0 high pH,pH=5.8 None Complex regulatory mechanisms underlying mineral nutrient acquisition in soybean roots responsive to low pH stress BGISEQ-500 GSE129320 GSM3704507 SRR8847720 N single-end root None 0 high pH,pH=5.8 None Complex regulatory mechanisms underlying mineral nutrient acquisition in soybean roots responsive to low pH stress BGISEQ-500 GSE125103 GSM3562775 SRR8427366 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562776 SRR8427367 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562777 SRR8427368 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562778 SRR8427369 N single-end root 30 day post aphid infestation 1 treatment_Aphid_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562779 SRR8427362 N single-end root 30 day post aphid infestation 1 treatment_Aphid_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562780 SRR8427363 N single-end root 30 day post aphid infestation 1 treatment_Aphid_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562781 SRR8427364 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562782 SRR8427365 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562783 SRR8427370 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562784 SRR8427371 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562785 SRR8427383 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562786 SRR8427384 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562787 SRR8427385 N single-end root 30 day post aphid infestation 1 treatment_Aphid_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562788 SRR8427386 N single-end root 30 day post aphid infestation 1 treatment_Aphid_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562789 SRR8427387 N single-end root 30 day post aphid infestation 1 treatment_Aphid_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562790 SRR8427388 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562791 SRR8427389 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562792 SRR8427390 N single-end root 30 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562793 SRR8427391 N single-end root 30 day post aphid infestation 0 control_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562794 SRR8427392 N single-end root 30 day post aphid infestation 0 control_30d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562795 SRR8427405 N single-end root 30 day post aphid infestation 0 control_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562796 SRR8427404 N single-end root 30 day post aphid infestation 0 control_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562797 SRR8427407 N single-end root 30 day post aphid infestation 0 control_30d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562798 SRR8427406 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562799 SRR8427401 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562800 SRR8427400 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562801 SRR8427403 N single-end root 5 day post aphid infestation 1 treatment_Aphid_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562802 SRR8427402 N single-end root 5 day post aphid infestation 1 treatment_Aphid_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562803 SRR8427399 N single-end root 5 day post aphid infestation 1 treatment_Aphid_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562804 SRR8427398 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562805 SRR8427381 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562806 SRR8427382 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562807 SRR8427379 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562808 SRR8427380 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562809 SRR8427377 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN)_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562810 SRR8427378 N single-end root 5 day post aphid infestation 1 treatment_Aphid_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562811 SRR8427375 N single-end root 5 day post aphid infestation 1 treatment_Aphid_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562812 SRR8427376 N single-end root 5 day post aphid infestation 1 treatment_Aphid_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562813 SRR8427373 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562814 SRR8427374 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562815 SRR8427408 N single-end root 5 day post aphid infestation 1 treatment_soybean cyst nematode(SCN) and Aphid_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562816 SRR8427396 N single-end root 5 day post aphid infestation 0 control_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562817 SRR8427394 N single-end root 5 day post aphid infestation 0 control_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562818 SRR8427372 N single-end root 5 day post aphid infestation 0 control_5d H. glycines resistant (MN1806CN)] cultivars Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562819 SRR8427397 N single-end root 5 day post aphid infestation 0 control_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562820 SRR8427395 N single-end root 5 day post aphid infestation 0 control_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE125103 GSM3562821 SRR8427393 N single-end root 5 day post aphid infestation 0 control_5d Williams 82 Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean Illumina HiSeq 3000 GSE129626 GSM3717543 SRR8848027 N single-end leaf Day1 0 11A_Control_Susceptible_Day1 LD12-15838R Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717544 SRR8848028 N single-end leaf Day11 0 11C_Control_Susceptible_Day11 LD12-15838R Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717545 SRR8848025 N single-end leaf Day1 0 12A_Control_Resistant_Day1 LD12-15813Ra Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717546 SRR8848026 N single-end leaf Day11 0 12C_Control_Resistant_Day11 LD12-15813Ra Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717547 SRR8848031 N single-end leaf Day11 1 1C_No Inducer_15 biotype1_Day11 LD12-15838R Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717548 SRR8848032 N single-end leaf Day1 1 4A_50 biotype 2_15 biotype1_Day1 LD12-15838R Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717549 SRR8848029 N single-end leaf Day11 1 4C_50 biotype 2_15 biotype1_Day11 LD12-15838R Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717550 SRR8848030 N single-end leaf Day11 1 5C_No Inducer_15 biotype1_Day11 LD12-15813Ra Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717551 SRR8848023 N single-end leaf Day1 1 8A_50 biotype2_15 biotype1_Day1 LD12-15813Ra Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE129626 GSM3717552 SRR8848024 N single-end leaf Day11 1 8C_50 biotype2_15 biotype1_Day11 LD12-15813Ra Characterization of induced susceptibility effects on soybean- soybean aphid interactions NextSeq 500 GSE112584 GSM3073252 SRR6924895 N paired-end seedling 9 days after treatment 0 control_ph5.8_9days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073253 SRR6924896 N paired-end seedling 9 days after treatment 0 control_ph5.8_9days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073254 SRR6924897 N paired-end seedling 9 days after treatment 0 control_ph5.8_9days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073255 SRR6924898 N paired-end seedling 9 days after treatment 1 treatment_ph3_9days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073256 SRR6924899 N paired-end seedling 9 days after treatment 1 treatment_ph3_9days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073257 SRR6924900 N paired-end seedling 9 days after treatment 1 treatment_ph3_9days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073258 SRR6924901 N paired-end seedling 6 days after treatment 0 control_ph5.8_6days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073259 SRR6924902 N paired-end seedling 6 days after treatment 0 control_ph5.8_6days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073260 SRR6924903 N paired-end seedling 6 days after treatment 0 control_ph5.8_6days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073261 SRR6924904 N paired-end seedling 6 days after treatment 1 treatment_ph3_6days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073262 SRR6924905 N paired-end seedling 6 days after treatment 1 treatment_ph3_6days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE112584 GSM3073263 SRR6924906 N paired-end seedling 6 days after treatment 1 treatment_ph3_6days Harosoy 63 Identification of a NAC Transcription Factor for the Elicitation of Glyceollin Biosynthesis in Soybean Reveals a Conserved Phytoalexin Regulatory Pathway Illumina HiSeq 1500 GSE103490 GSM2772382 SRR6006869 N paired-end leaf germination day 30 0 DN50_rep1 None GmRAV1 regulates regeneration of root and adventitious buds by cytokinin in Arabidopsis and soybean Illumina HiSeq 2000 GSE103490 GSM2772383 SRR6006870 N paired-end leaf germination day 30 0 DN50_rep2 None GmRAV1 regulates regeneration of root and adventitious buds by cytokinin in Arabidopsis and soybean Illumina HiSeq 2000 GSE103490 GSM2772384 SRR6006871 N paired-end leaf germination day 30 0 DN50_rep3 None GmRAV1 regulates regeneration of root and adventitious buds by cytokinin in Arabidopsis and soybean Illumina HiSeq 2000 GSE103490 GSM2772385 SRR6006872 Y paired-end leaf germination day 30 1 GmRAV1-ox_rep1 None GmRAV1 regulates regeneration of root and adventitious buds by cytokinin in Arabidopsis and soybean Illumina HiSeq 2000 GSE103490 GSM2772386 SRR6006873 Y paired-end leaf germination day 30 1 GmRAV1-ox_rep2 None GmRAV1 regulates regeneration of root and adventitious buds by cytokinin in Arabidopsis and soybean Illumina HiSeq 2000 GSE103490 GSM2772387 SRR6006874 Y paired-end leaf germination day 30 1 GmRAV1-ox_rep3 None GmRAV1 regulates regeneration of root and adventitious buds by cytokinin in Arabidopsis and soybean Illumina HiSeq 2000 GSE114878 GSM3152839 SRR7213989 N paired-end leaf 8:00 0 biological replicate 1 - 8:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152840 SRR7213990 N paired-end leaf 8:00 0 biological replicate 2 - 8:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152841 SRR7213991 N paired-end leaf 8:00 0 biological replicate 3 - 8:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152842 SRR7213992 N paired-end leaf 8:00 0 biological replicate 4 - 8:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152843 SRR7213993 N paired-end leaf 11:00 0 biological replicate 1 - 11:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152844 SRR7213994 N paired-end leaf 11:00 0 biological replicate 2 - 11:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152845 SRR7213995 N paired-end leaf 11:00 0 biological replicate 3 - 11:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152846 SRR7213996 N paired-end leaf 11:00 0 biological replicate 4 - 11:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152847 SRR7213997 N paired-end leaf 14:00 0 biological replicate 1 - 14:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152848 SRR7213998 N paired-end leaf 14:00 0 biological replicate 2 - 14:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152849 SRR7213999 N paired-end leaf 14:00 0 biological replicate 3 - 14:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152850 SRR7214000 N paired-end leaf 14:00 0 biological replicate 4 - 14:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152851 SRR7214001 N paired-end leaf 17:00 0 biological replicate 1 - 17:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152852 SRR7214002 N paired-end leaf 17:00 0 biological replicate 2 - 17:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152853 SRR7214003 N paired-end leaf 17:00 0 biological replicate 3 - 17:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE114878 GSM3152854 SRR7254062 N paired-end leaf 17:00 0 biological replicate 4 - 17:00 93B15 mRNA sequencing of field-grown Glycine max whole leaflets at four time points Illumina HiSeq 2000 GSE122915 GSM3488014 SRR8241878 N paired-end leaf 20 days after germination 0 GmBR16_20_DAG_1 GmBR16 Genes induced by senescence in soybean Illumina HiSeq 2500 GSE122915 GSM3488015 SRR8241879 N paired-end leaf 20 days after germination 0 GmBR16_20_DAG_2 GmBR16 Genes induced by senescence in soybean Illumina HiSeq 2500 GSE122915 GSM3488016 SRR8241880 N paired-end leaf 20 days after germination 0 GmBR16_20_DAG_3 GmBR16 Genes induced by senescence in soybean Illumina HiSeq 2500 GSE122915 GSM3488017 SRR8241881 N paired-end leaf 80 days after germination 0 GmBR16_80_DAG_1 GmBR16 Genes induced by senescence in soybean Illumina HiSeq 2500 GSE122915 GSM3488018 SRR8241882 N paired-end leaf 80 days after germination 0 GmBR16_80_DAG_2 GmBR16 Genes induced by senescence in soybean Illumina HiSeq 2500 GSE122915 GSM3488019 SRR8241883 N paired-end leaf 80 days after germination 0 GmBR16_80_DAG_3 GmBR16 Genes induced by senescence in soybean Illumina HiSeq 2500 GSE116593 GSM3243555 SRR7468248 N paired-end nodule 25 days 0 HP,phosphorus conccentration: 500 mM None Genome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules HiSeq X Ten GSE116593 GSM3243556 SRR7468249 N paired-end nodule 25 days 0 HP,phosphorus conccentration: 500 mM None Genome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules HiSeq X Ten GSE116593 GSM3243557 SRR7468250 N paired-end nodule 25 days 0 HP,phosphorus conccentration: 500 mM None Genome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules HiSeq X Ten GSE116593 GSM3243558 SRR7468251 N paired-end nodule 25 days 1 LP,phosphorus conccentration:25 mM None Genome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules HiSeq X Ten GSE116593 GSM3243559 SRR7468252 N paired-end nodule 25 days 1 LP,phosphorus conccentration:25 mM None Genome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules HiSeq X Ten GSE116593 GSM3243560 SRR7468253 N paired-end nodule 25 days 1 LP,phosphorus conccentration:25 mM None Genome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules HiSeq X Ten GSE114448 GSM3141910 SRR7172314 N single-end stem 4 weeks 0 non infected resistant soybean stem None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141911 SRR7172315 N single-end stem 4 weeks 0 non infected resistant soybean stem None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141912 SRR7172316 N single-end stem 4 weeks 0 non infected resistant soybean stem None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141913 SRR7172317 N single-end stem 4 weeks 1 resistant soybean stem 24 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141914 SRR7172318 N single-end stem 4 weeks 1 resistant soybean stem 24 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141915 SRR7172319 N single-end stem 4 weeks 1 resistant soybean stem 24 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141916 SRR7172320 N single-end stem 4 weeks 1 resistant soybean stem 48 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141917 SRR7172321 N single-end stem 4 weeks 1 resistant soybean stem 48 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141918 SRR7172322 N single-end stem 4 weeks 1 resistant soybean stem 48 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141919 SRR7172323 N single-end stem 4 weeks 1 resistant soybean stem 96 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141920 SRR7172324 N single-end stem 4 weeks 1 resistant soybean stem 96 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141921 SRR7172325 N single-end stem 4 weeks 1 resistant soybean stem 96 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141922 SRR7172326 N single-end stem 4 weeks 0 non infected susceptible soybean stem None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141923 SRR7172327 N single-end stem 4 weeks 0 non infected susceptible soybean stem None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141924 SRR7172328 N single-end stem 4 weeks 0 non infected susceptible soybean stem None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141925 SRR7172329 N single-end stem 4 weeks 1 susceptible soybean stem 24 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141926 SRR7172330 N single-end stem 4 weeks 1 susceptible soybean stem 24 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141927 SRR7172331 N single-end stem 4 weeks 1 susceptible soybean stem 24 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141928 SRR7172332 N single-end stem 4 weeks 1 susceptible soybean stem 48 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141929 SRR7172333 N single-end stem 4 weeks 1 susceptible soybean stem 48 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141930 SRR7172334 N single-end stem 4 weeks 1 susceptible soybean stem 48 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141931 SRR7172335 N single-end stem 4 weeks 1 susceptible soybean stem 96 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141932 SRR7172336 N single-end stem 4 weeks 1 susceptible soybean stem 96 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE114448 GSM3141933 SRR7172337 N single-end stem 4 weeks 1 susceptible soybean stem 96 hours post sclerotinia infection None Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection Illumina HiSeq 2500 GSE101692 GSM2712219 SRR5852789 Y single-end seed seed length 2-4 mm 1 3mlpa-Stage1-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712220 SRR5852790 Y single-end seed seed length 2-4 mm 1 3mlpa-Stage1-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712221 SRR5852791 Y single-end seed seed length 2-4 mm 1 3mlpa-Stage1-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712222 SRR5852792 Y single-end seed seed length 4-6 mm 1 3mlpa-Stage2-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712223 SRR5852793 Y single-end seed seed length 4-6 mm 1 3mlpa-Stage2-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712224 SRR5852794 Y single-end seed seed length 4-6 mm 1 3mlpa-Stage2-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712225 SRR5852795 Y single-end seed seed length 6-8 mm 1 3mlpa-Stage3-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712226 SRR5852796 Y single-end seed seed length 6-8 mm 1 3mlpa-Stage3-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712227 SRR5852797 Y single-end seed seed length 6-8 mm 1 3mlpa-Stage3-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712228 SRR5852798 Y single-end seed seed length 8-10 mm 1 3mlpa-Stage4-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712229 SRR5852799 Y single-end seed seed length 8-10 mm 1 3mlpa-Stage4-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712230 SRR5852800 Y single-end seed seed length 8-10 mm 1 3mlpa-Stage4-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712231 SRR5852801 Y single-end seed seed length 10-12 mm mm 1 3mlpa-Stage5-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712232 SRR5852802 Y single-end seed seed length 10-12 mm mm 1 3mlpa-Stage5-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712233 SRR5852803 Y single-end seed seed length 10-12 mm mm 1 3mlpa-Stage5-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712234 SRR5852804 N single-end seed seed length 2-4 mm 0 3MWT-Stage1-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712235 SRR5852805 N single-end seed seed length 2-4 mm 0 3MWT-Stage1-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712236 SRR5852806 N single-end seed seed length 2-4 mm 0 3MWT-Stage1-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712237 SRR5852807 N single-end seed seed length 4-6 mm 0 3MWT-Stage2-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712238 SRR5852808 N single-end seed seed length 4-6 mm 0 3MWT-Stage2-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712239 SRR5852809 N single-end seed seed length 4-6 mm 0 3MWT-Stage2-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712240 SRR5852810 N single-end seed seed length 6-8 mm 0 3MWT-Stage3-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712241 SRR5852811 N single-end seed seed length 6-8 mm 0 3MWT-Stage3-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712242 SRR5852812 N single-end seed seed length 6-8 mm 0 3MWT-Stage3-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712243 SRR5852813 N single-end seed seed length 8-10 mm 0 3MWT-Stage4-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712244 SRR5852814 N single-end seed seed length 8-10 mm 0 3MWT-Stage4-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712245 SRR5852815 N single-end seed seed length 8-10 mm 0 3MWT-Stage4-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712246 SRR5852816 N single-end seed seed length 10-12 mm mm 0 3MWT-Stage5-Rep1_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712247 SRR5852817 N single-end seed seed length 10-12 mm mm 0 3MWT-Stage5-Rep2_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712248 SRR5852818 N single-end seed seed length 10-12 mm mm 0 3MWT-Stage5-Rep3_re-analyzed None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712249 SRR5852819 Y single-end seed seed length 2-4 mm 1 1mlpa-Stage1-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712250 SRR5852820 Y single-end seed seed length 2-4 mm 1 1mlpa-Stage1-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712251 SRR5852821 Y single-end seed seed length 2-4 mm 1 1mlpa-Stage1-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712252 SRR5852822 Y single-end seed seed length 4-6 mm 1 1mlpa-Stage2-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712253 SRR5852823 Y single-end seed seed length 4-6 mm 1 1mlpa-Stage2-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712254 SRR5852824 Y single-end seed seed length 4-6 mm 1 1mlpa-Stage2-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712255 SRR5852825 Y single-end seed seed length 6-8 mm 1 1mlpa-Stage3-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712256 SRR5852826 Y single-end seed seed length 6-8 mm 1 1mlpa-Stage3-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712257 SRR5852827 Y single-end seed seed length 6-8 mm 1 1mlpa-Stage3-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712258 SRR5852828 Y single-end seed seed length 8-10 mm 1 1mlpa-Stage4-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712259 SRR5852829 Y single-end seed seed length 8-10 mm 1 1mlpa-Stage4-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712260 SRR5852830 Y single-end seed seed length 8-10 mm 1 1mlpa-Stage4-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712261 SRR5852831 Y single-end seed seed length 10-12 mm mm 1 1mlpa-Stage5-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712262 SRR5852832 Y single-end seed seed length 10-12 mm mm 1 1mlpa-Stage5-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712263 SRR5852833 Y single-end seed seed length 10-12 mm mm 1 1mlpa-Stage5-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712264 SRR5852834 N single-end seed seed length 2-4 mm 0 1MWT-Stage1-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712265 SRR5852835 N single-end seed seed length 2-4 mm 0 1MWT-Stage1-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712266 SRR5852836 N single-end seed seed length 2-4 mm 0 1MWT-Stage1-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712267 SRR5852837 N single-end seed seed length 4-6 mm 0 1MWT-Stage2-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712268 SRR5852838 N single-end seed seed length 4-6 mm 0 1MWT-Stage2-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712269 SRR5852839 N single-end seed seed length 4-6 mm 0 1MWT-Stage2-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712270 SRR5852840 N single-end seed seed length 6-8 mm 0 1MWT-Stage3-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712271 SRR5852841 N single-end seed seed length 6-8 mm 0 1MWT-Stage3-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712272 SRR5852842 N single-end seed seed length 6-8 mm 0 1MWT-Stage3-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712273 SRR5852843 N single-end seed seed length 8-10 mm 0 1MWT-Stage4-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712274 SRR5852844 N single-end seed seed length 8-10 mm 0 1MWT-Stage4-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712275 SRR5852845 N single-end seed seed length 8-10 mm 0 1MWT-Stage4-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712276 SRR5852846 N single-end seed seed length 10-12 mm mm 0 1MWT-Stage5-Rep1 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712277 SRR5852847 N single-end seed seed length 10-12 mm mm 0 1MWT-Stage5-Rep2 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE101692 GSM2712278 SRR5852848 N single-end seed seed length 10-12 mm mm 0 1MWT-Stage5-Rep3 None Inference of transcription regulatory network in low phytic acid soybean seeds Illumina HiSeq 2000 GSE85714 GSM2282102 SRR4036063 N paired-end leaf 28 Days after planting (R2 growth stage) 1 Line T295H_SterileAP1.1 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282103 SRR4036064 N paired-end leaf 28 Days after planting (R2 growth stage) 1 Line T295H_SterileAP1.2 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282104 SRR4036065 N paired-end leaf 28 Days after planting (R2 growth stage) 1 Line T295H_SterileAP1.3 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282105 SRR4036066 N paired-end leaf 35 days after planting 0 Line T295H_Sterile_Control2.1 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282106 SRR4036067 N paired-end leaf 35 days after planting 0 Line T295H_Sterile_Control2.2 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282107 SRR4036068 N paired-end leaf 35 days after planting 0 Line T295H_Sterile_Control2.3 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282108 SRR4036069 N paired-end leaf 35 days after planting 1 Line T295H_Sterile2.1 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282109 SRR4036070 N paired-end leaf 35 days after planting 1 Line T295H_Sterile2.2 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282110 SRR4036071 N paired-end leaf 35 days after planting 1 Line T295H_Sterile2.3 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282111 SRR4036072 N paired-end leaf 63 days after planting 0 Line T295H_Sterile_Control3.1 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282112 SRR4036073 N paired-end leaf 63 days after planting 0 Line T295H_Sterile_Control3.2 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282113 SRR4036074 N paired-end leaf 63 days after planting 0 Line T295H_Sterile_Control3.3 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282114 SRR4036075 N paired-end leaf 63 days after planting 1 Line T295H_Sterile3.1 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282115 SRR4036076 N paired-end leaf 63 days after planting 1 Line T295H_Sterile3.2 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282116 SRR4036077 N paired-end leaf 63 days after planting 1 Line T295H_Sterile3.3 T295H Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282117 SRR4036078 N paired-end leaf 38 days after planting (R2 growth stage) 1 Line Williams 82_AP1.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282118 SRR4036079 N paired-end leaf 38 days after planting (R2 growth stage) 1 Line Williams 82_AP1.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282119 SRR4036080 N paired-end leaf 38 days after planting (R2 growth stage) 1 Line Williams 82_AP1.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282120 SRR4036081 N paired-end leaf 45 days after planting 0 Line Williams 82_Depodding_Control2.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282121 SRR4036082 N paired-end leaf 45 days after planting 0 Line Williams 82_Depodding_Control2.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282122 SRR4036083 N paired-end leaf 45 days after planting 0 Line Williams 82_Depodding_Control2.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282123 SRR4036084 N paired-end leaf 45 days after planting 1 Line Williams 82_Depodding2.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282124 SRR4036085 N paired-end leaf 45 days after planting 1 Line Williams 82_Depodding2.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282125 SRR4036086 N paired-end leaf 45 days after planting 1 Line Williams 82_Depodding2.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282126 SRR4036087 N paired-end leaf 54 days after planting 0 Line Williams 82_Depodding_Control3.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282127 SRR4036088 N paired-end leaf 54 days after planting 0 Line Williams 82_Depodding_Control3.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282128 SRR4036089 N paired-end leaf 54 days after planting 0 Line Williams 82_Depodding_Control3.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282129 SRR4036090 N paired-end leaf 54 days after planting 1 Line Williams 82_Depodding3.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282130 SRR4036091 N paired-end leaf 54 days after planting 1 Line Williams 82_Depodding3.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282131 SRR4036092 N paired-end leaf 54 days after planting 1 Line Williams 82_Depodding3.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282132 SRR4036093 N paired-end leaf 64 days after planting 0 Line Williams 82_Depodding_Control4.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282133 SRR4036094 N paired-end leaf 64 days after planting 0 Line Williams 82_Depodding_Control4.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282134 SRR4036095 N paired-end leaf 64 days after planting 0 Line Williams 82_Depodding_Control4.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282135 SRR4036096 N paired-end leaf 64 days after planting 1 Line Williams 82_Depodding5.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282136 SRR4036097 N paired-end leaf 64 days after planting 1 Line Williams 82_Depodding5.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282137 SRR4036098 N paired-end leaf 64 days after planting 1 Line Williams 82_Depodding5.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282138 SRR4036099 N paired-end leaf 76 days after planting 0 Line Williams 82_Depodding_Control5.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282139 SRR4036100 N paired-end leaf 76 days after planting 0 Line Williams 82_Depodding_Control5.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282140 SRR4036101 N paired-end leaf 76 days after planting 0 Line Williams 82_Depodding_Control5.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282141 SRR4036102 N paired-end leaf 76 days after planting 1 Line Williams 82_Depodding4.1 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282142 SRR4036103 N paired-end leaf 76 days after planting 1 Line Williams 82_Depodding4.2 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE85714 GSM2282143 SRR4036104 N paired-end leaf 76 days after planting 1 Line Williams 82_Depodding4.3 Williams 82 Molecular Analysis of Sink Limited Soybeans Illumina HiSeq 2500 GSE94366 GSM2474145 SRR5221832 N paired-end seed seeds after 13 days flowering 1 Cultivated soybean df12 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474146 SRR5221833 N paired-end seed seeds after 13 days flowering 1 Cultivated soybean df14 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474147 SRR5221834 N paired-end seed seeds after 13 days flowering 1 Cultivated soybean df17 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474148 SRR5221835 N paired-end seed seeds after 13 days flowering 1 Cultivated soybean df36 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474149 SRR5221836 N paired-end seed seeds after 13 days flowering 1 Cultivated soybean df3 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474150 SRR5221837 N paired-end seed seeds after 13 days flowering 1 Cultivated soybean df43 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474151 SRR5221838 N paired-end seed seeds after 13 days flowering 0 Wild soybean ys16 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474152 SRR5221839 N paired-end seed seeds after 13 days flowering 0 Wild soybean ys17 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474153 SRR5221840 N paired-end seed seeds after 13 days flowering 0 Wild soybean ys1 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474154 SRR5221841 N paired-end seed seeds after 13 days flowering 0 Wild soybean ys23 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474155 SRR5221842 N paired-end seed seeds after 13 days flowering 0 Wild soybean ys26 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474156 SRR5221843 N paired-end seed seeds after 13 days flowering 0 Wild soybean ys29 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE94366 GSM2474157 SRR5221844 N paired-end seed seeds after 13 days flowering 0 Wild soybean ys34 None Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans Illumina HiSeq 2500 GSE86608 GSM2306783 SRR4209737 N single-end leaf None 0 F1 hybrid rep 1 Clayton F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306784 SRR4209740 N single-end leaf None 0 F1 hybrid rep 2 Clayton F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306785 SRR4209743 N single-end leaf None 0 F1 hybrid rep 3 Clayton F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306786 SRR4209746 N single-end leaf None 0 F1 hybrid rep 4 Clayton F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306787 SRR4209749 N single-end leaf None 1 NMS4-44-329 rep 1 Clayton Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306788 SRR4209752 N single-end leaf None 1 NMS4-44-329 rep 2 Clayton Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306789 SRR4209755 N single-end leaf None 1 NMS4-44-329 rep 3 Clayton Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306790 SRR4209758 N single-end leaf None 1 NMS4-44-329 rep 4 Clayton Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306791 SRR4209761 N single-end leaf None 1 N7103 rep 1 Clayton recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306792 SRR4209764 N single-end leaf None 1 N7103 rep 2 Clayton recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306793 SRR4209767 N single-end leaf None 1 N7103 rep 3 Clayton recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306794 SRR4209770 N single-end leaf None 1 N7103 rep 4 Clayton recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306795 SRR4209773 N single-end leaf None 0 F1 hybrid rep 1 Caswell F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306796 SRR4209776 N single-end leaf None 0 F1 hybrid rep 2 Caswell F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306797 SRR4209779 N single-end leaf None 0 F1 hybrid rep 3 Caswell F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306798 SRR4209782 N single-end leaf None 0 F1 hybrid rep 4 Caswell F1 hybrid Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306799 SRR4209785 N single-end leaf None 1 NMS4-44-329 rep 1 Caswell Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306800 SRR4209788 N single-end leaf None 1 NMS4-44-329 rep 2 Caswell Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306801 SRR4209791 N single-end leaf None 1 NMS4-44-329 rep 3 Caswell Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306802 SRR4209794 N single-end leaf None 1 NMS4-44-329 rep 4 Caswell Parent with G soja in pedigree Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306803 SRR4209797 N single-end leaf None 1 N7103 rep 1 Caswell recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306804 SRR4209800 N single-end leaf None 1 N7103 rep 2 Caswell recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306805 SRR4209803 N single-end leaf None 1 N7103 rep 3 Caswell recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE86608 GSM2306806 SRR4209806 N single-end leaf None 1 N7103 rep 4 Caswell recurrent G. max parent Changes in Gene Expression between Soybean F1 Hybrids and their Parents are Associated with Agronomically Valuable Traits NextSeq 500 GSE98199 GSM2589116 SRR5481101 N single-end seed stage 7.1 0 seeds harvested at stage 7.1 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589117 SRR5481110 N single-end seed stage 7.2 0 seeds harvested at stage 7.2, replica 1 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589118 SRR5481122 N single-end seed stage 7.2 0 seeds harvested at stage 7.2, replica 2 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589119 SRR5481131 N single-end seed stage 7.2 0 seeds harvested at stage 7.2 and dried, replica 1 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589120 SRR5481137 N single-end seed stage 7.2 0 seeds harvested at stage 7.2 and dried, replica 2 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589121 SRR5481155 N single-end seed stage 7.3 0 seeds harvested at stage 7.3 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589122 SRR5481161 N single-end seed stage 8.1 0 seeds harvested at stage 8.1 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589123 SRR5481167 N single-end seed stage 8.2 0 seeds harvested at stage 8.2 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589124 SRR5481173 N single-end seed stage 8.3 0 seeds harvested at stage 8.3 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589125 SRR5481182 N single-end seed stage 9 0 seeds harvested at stage 9, replica 1 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE98199 GSM2589126 SRR5481191 N single-end seed stage 9 0 seeds harvested at stage 9, replica 2 BRS284 Expression profiling of Glycine max seed maturation by high throughput sequencing Illumina HiSeq 2500 GSE83481 GSM2204137 SRR3680368 N paired-end embryo_axis None 0 dry BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204138 SRR3680373 N paired-end embryo_axis None 0 dry BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204139 SRR3680378 N paired-end embryo_axis None 1 3 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204140 SRR3680383 N paired-end embryo_axis None 1 3 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204141 SRR3680388 N paired-end embryo_axis None 1 6 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204142 SRR3680393 N paired-end embryo_axis None 1 6 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204143 SRR3680398 N paired-end embryo_axis None 1 12 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204144 SRR3680403 N paired-end embryo_axis None 1 12 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204145 SRR3680408 N paired-end embryo_axis None 1 24 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE83481 GSM2204146 SRR3680413 N paired-end embryo_axis None 1 24 hours after imbibition BRS284 Large-scale analysis of soybean embryonic axis in five time points during germination Illumina HiSeq 2000 GSE67779 GSM1655665 SRR1965003 N single-end leaf 0h 0 no aphids,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655666 SRR1965004 N single-end leaf 4h 1 4h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655667 SRR1965005 N single-end leaf 8h 1 8h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655668 SRR1965006 N single-end leaf 24h 1 24h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655669 SRR1965007 N single-end leaf 48h 1 48h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655670 SRR1965008 N single-end leaf 0h 0 no aphids,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655671 SRR1965009 N single-end leaf 4h 1 4h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655672 SRR1965010 N single-end leaf 8h 1 8h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655673 SRR1965011 N single-end leaf 24h 1 24h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655674 SRR1965012 N single-end leaf 48h 1 48h after aphid infestation,susceptible None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655675 SRR1965013 N single-end leaf 0h 0 no aphids,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655676 SRR1965014 N single-end leaf 4h 1 4h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655677 SRR1965015 N single-end leaf 8h 1 8h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655678 SRR1965016 N single-end leaf 24h 1 24h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655679 SRR1965017 N single-end leaf 48h 1 48h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655680 SRR1965018 N single-end leaf 0h 0 no aphids,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655681 SRR1965019 N single-end leaf 4h 1 4h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655682 SRR1965020 N single-end leaf 8h 1 8h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655683 SRR1965021 N single-end leaf 24h 1 24h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE67779 GSM1655684 SRR1965022 N single-end leaf 48h 1 48h after aphid infestation,resistant None Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation Illumina HiSeq 2000 GSE66861 GSM1633404 SRR1914574 N paired-end seedling 72 hpi 0 control,72 hours post inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633405 SRR1914575 N paired-end seedling 72 hpi 0 control,72 hours post inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633406 SRR1914576 N paired-end seedling 72 hpi 0 control,72 hours post inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633407 SRR1914577 N paired-end seedling 96 hpi 0 control,96 hours post inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633408 SRR1914578 N paired-end seedling 96 hpi 0 control,96 hours post inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633409 SRR1914579 N paired-end seedling 96 hpi 0 control,96 hours post inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633410 SRR1914580 N paired-end seedling 72 hpi 1 72 hours post FO36 non-pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633411 SRR1914581 N paired-end seedling 72 hpi 1 72 hours post FO36 non-pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633412 SRR1914582 N paired-end seedling 72 hpi 1 72 hours post FO36 non-pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633413 SRR1914583 N paired-end seedling 96 hpi 1 96 hours post FO36 non-pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633414 SRR1914584 N paired-end seedling 96 hpi 1 96 hours post FO36 non-pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633415 SRR1914585 N paired-end seedling 96 hpi 1 96 hours post FO36 non-pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633416 SRR1914586 N paired-end seedling 72 hpi 1 72 hours post FO40 pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633417 SRR1914587 N paired-end seedling 72 hpi 1 72 hours post FO40 pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633418 SRR1914588 N paired-end seedling 72 hpi 1 72 hours post FO40 pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633419 SRR1914589 N paired-end seedling 96 hpi 1 96 hours post FO40 pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633420 SRR1914590 N paired-end seedling 96 hpi 1 96 hours post FO40 pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE66861 GSM1633421 SRR1914591 N paired-end seedling 96 hpi 1 96 hours post FO40 pathogenic fusarium oxysporum inoculation None Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum Illumina HiSeq 2500 GSE59076 GSM1426228 SRR1506089 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,1 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426229 SRR1506090 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,1 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426230 SRR1506091 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,1 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426231 SRR1506092 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,1 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426232 SRR1506093 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,2 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426233 SRR1506094 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,2 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426234 SRR1506095 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,2 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426235 SRR1506096 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,2 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426236 SRR1506097 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,3 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426237 SRR1506098 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,3 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426238 SRR1506099 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,3 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426239 SRR1506100 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,3 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426240 SRR1506101 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,4 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426241 SRR1506102 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 0 25ppb ozone,control,4 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426242 SRR1506103 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,4 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE59076 GSM1426243 SRR1506104 N single-end leaf 30 minute increments starting 5 hours after introduction of ozone 1 75ppb ozone,treatment,4 time point None RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean Illumina HiSeq 2000 GSE75575 GSM1959587 SRR5352345 Y single-end seed seed length: 2-4 mm 1 3mlpa-Stage1,2-4mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959588 SRR5352346 Y single-end seed seed length: 2-4 mm 1 3mlpa-Stage1,2-4mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959589 SRR5352347 Y single-end seed seed length: 2-4 mm 1 3mlpa-Stage1,2-4mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959590 SRR5352348 Y single-end seed seed length: 4-6 mm 1 3mlpa-Stage2,4-6 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959591 SRR5352349 Y single-end seed seed length: 4-6 mm 1 3mlpa-Stage2,4-6 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959592 SRR5352350 Y single-end seed seed length: 4-6 mm 1 3mlpa-Stage2,4-6 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959593 SRR5352351 Y single-end seed seed length: 6-8 mm 1 3mlpa-Stage3,6-8 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959594 SRR5352352 Y single-end seed seed length: 6-8 mm 1 3mlpa-Stage3,6-8 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959595 SRR5352353 Y single-end seed seed length: 6-8 mm 1 3mlpa-Stage3,6-8 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959596 SRR5352354 Y single-end seed seed length: 8-10 mm 1 3mlpa-Stage4,8-10 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959597 SRR5352355 Y single-end seed seed length: 8-10 mm 1 3mlpa-Stage4,8-10 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959598 SRR5352356 Y single-end seed seed length: 8-10 mm 1 3mlpa-Stage4,8-10 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959599 SRR5352357 Y single-end seed seed length: 10-12 mm 1 3mlpa-Stage5,10-12 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959600 SRR5352358 Y single-end seed seed length: 10-12 mm 1 3mlpa-Stage5,10-12 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959601 SRR5352359 Y single-end seed seed length: 10-12 mm 1 3mlpa-Stage5,10-12 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959602 SRR5352361 N single-end seed seed length: 2-4 mm 0 3MWT-Stage1,2-4mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959603 SRR5352362 N single-end seed seed length: 2-4 mm 0 3MWT-Stage1,2-4mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959604 SRR5352363 N single-end seed seed length: 2-4 mm 0 3MWT-Stage1,2-4mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959605 SRR5352364 N single-end seed seed length: 4-6 mm 0 3MWT-Stage2,4-6 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959606 SRR5352365 N single-end seed seed length: 4-6 mm 0 3MWT-Stage2,4-6 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959607 SRR5352366 N single-end seed seed length: 4-6 mm 0 3MWT-Stage2,4-6 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959608 SRR5352367 N single-end seed seed length: 6-8 mm 0 3MWT-Stage3,6-8 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959609 SRR5352368 N single-end seed seed length: 6-8 mm 0 3MWT-Stage3,6-8 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959610 SRR5352369 N single-end seed seed length: 6-8 mm 0 3MWT-Stage3,6-8 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959611 SRR5352370 N single-end seed seed length: 8-10 mm 0 3MWT-Stage4,8-10 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959612 SRR5352371 N single-end seed seed length: 8-10 mm 0 3MWT-Stage4,8-10 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959613 SRR5352372 N single-end seed seed length: 8-10 mm 0 3MWT-Stage4,8-10 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959614 SRR5352373 N single-end seed seed length: 10-12 mm 0 3MWT-Stage5,10-12 mm-Rep1 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959615 SRR5352374 N single-end seed seed length: 10-12 mm 0 3MWT-Stage5,10-12 mm-Rep2 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE75575 GSM1959616 SRR5352375 N single-end seed seed length: 10-12 mm 0 3MWT-Stage5,10-12 mm-Rep3 None Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines Illumina HiSeq 2000 GSE69469 GSM1701586 SRR2048167 N paired-end leaf developmental stage: V1 1 ZT0_8h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701587 SRR2048168 N paired-end leaf developmental stage: V1 1 ZT0_8h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701588 SRR2048169 N paired-end leaf developmental stage: V1 1 ZT0_8h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701589 SRR2048170 N paired-end leaf developmental stage: V1 0 ZT0_8h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701590 SRR2048171 N paired-end leaf developmental stage: V1 0 ZT0_8h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701591 SRR2048172 N paired-end leaf developmental stage: V1 0 ZT0_8h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701592 SRR2048173 N paired-end leaf developmental stage: V1 1 ZT4_12h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701593 SRR2048174 N paired-end leaf developmental stage: V1 1 ZT4_12h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701594 SRR2048175 N paired-end leaf developmental stage: V1 1 ZT4_12h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701595 SRR2048176 N paired-end leaf developmental stage: V1 0 ZT4_12h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701596 SRR2048177 N paired-end leaf developmental stage: V1 0 ZT4_12h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701597 SRR2048178 N paired-end leaf developmental stage: V1 0 ZT4_12h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701598 SRR2048179 N paired-end leaf developmental stage: V1 1 ZT8_16h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701599 SRR2048180 N paired-end leaf developmental stage: V1 1 ZT8_16h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701600 SRR2048181 N paired-end leaf developmental stage: V1 1 ZT8_16h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701601 SRR2048182 N paired-end leaf developmental stage: V1 0 ZT8_16h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701602 SRR2048183 N paired-end leaf developmental stage: V1 0 ZT8_16h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701603 SRR2048184 N paired-end leaf developmental stage: V1 0 ZT8_16h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701604 SRR2048185 N paired-end leaf developmental stage: V1 1 ZT12_20h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701605 SRR2048186 N paired-end leaf developmental stage: V1 1 ZT12_20h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701606 SRR2048187 N paired-end leaf developmental stage: V1 1 ZT12_20h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701607 SRR2048188 N paired-end leaf developmental stage: V1 0 ZT12_20h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701608 SRR2048189 N paired-end leaf developmental stage: V1 0 ZT12_20h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701609 SRR2048190 N paired-end leaf developmental stage: V1 0 ZT12_20h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701610 SRR2048191 N paired-end leaf developmental stage: V1 1 ZT16_24h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701611 SRR2048192 N paired-end leaf developmental stage: V1 1 ZT16_24h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701612 SRR2048193 N paired-end leaf developmental stage: V1 1 ZT16_24h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701613 SRR2048194 N paired-end leaf developmental stage: V1 0 ZT16_24h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701614 SRR2048195 N paired-end leaf developmental stage: V1 0 ZT16_24h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701615 SRR2048196 N paired-end leaf developmental stage: V1 0 ZT16_24h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701616 SRR2048197 N paired-end leaf developmental stage: V1 1 ZT20_4h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701617 SRR2048198 N paired-end leaf developmental stage: V1 1 ZT20_4h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701618 SRR2048199 N paired-end leaf developmental stage: V1 1 ZT20_4h_water_deficit BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701619 SRR2048200 N paired-end leaf developmental stage: V1 0 ZT20_4h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701620 SRR2048201 N paired-end leaf developmental stage: V1 0 ZT20_4h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE69469 GSM1701621 SRR2048202 N paired-end leaf developmental stage: V1 0 ZT20_4h_control BR16 Daytime soybean transcriptome fluctuations during water deficit stress Illumina HiSeq 2000 GSE61857 GSM1515813 SRR1592286 N paired-end cotyledon 4 days after planting 0 Cotyledon_Stage1_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515814 SRR1592287 N paired-end cotyledon 4 days after planting 0 Cotyledon_Stage1_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515815 SRR1592288 N paired-end cotyledon 4 days after planting 0 Cotyledon_Stage1_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515816 SRR1592289 N paired-end cotyledon 15 days after planting 0 Cotyledon_Stage2_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515817 SRR1592290 N paired-end cotyledon 15 days after planting 0 Cotyledon_Stage2_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515818 SRR1592291 N paired-end cotyledon 15 days after planting 0 Cotyledon_Stage2_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515819 SRR1592292 N paired-end cotyledon 27 days after planting 0 Cotyledon_Stage3_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515820 SRR1592293 N paired-end cotyledon 27 days after planting 0 Cotyledon_Stage3_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515821 SRR1592294 N paired-end cotyledon 27 days after planting 0 Cotyledon_Stage3_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiScanSQ GSE61857 GSM1515822 SRR1592295 N paired-end leaf V3 Stage 0 Leaf_Stage1_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515823 SRR1592296 N paired-end leaf V3 Stage 0 Leaf_Stage1_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515824 SRR1592297 N paired-end leaf V3 Stage 0 Leaf_Stage1_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515825 SRR1592298 N paired-end leaf 2 weeks after V3 stage 0 Leaf_Stage3_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515826 SRR1592299 N paired-end leaf 2 weeks after V3 stage 0 Leaf_Stage3_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515827 SRR1592300 N paired-end leaf 2 weeks after V3 stage 0 Leaf_Stage3_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515828 SRR1592301 N paired-end leaf 4 weeks after V3 stage 0 Leaf_Stage5_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515829 SRR1592302 N paired-end leaf 4 weeks after V3 stage 0 Leaf_Stage5_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515830 SRR1592303 N paired-end leaf 4 weeks after V3 stage 0 Leaf_Stage5_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515831 SRR1592304 N paired-end leaf 6 weeks after V3 stage 0 Leaf_Stage7_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515832 SRR1592305 N paired-end leaf 6 weeks after V3 stage 0 Leaf_Stage7_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515833 SRR1592306 N paired-end leaf 6 weeks after V3 stage 0 Leaf_Stage7_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515834 SRR1592307 N paired-end leaf 7 weeks after V3 stage 0 Leaf_Stage8_rep1 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515835 SRR1592308 N paired-end leaf 7 weeks after V3 stage 0 Leaf_Stage8_rep2 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE61857 GSM1515836 SRR1592309 N paired-end leaf 7 weeks after V3 stage 0 Leaf_Stage8_rep3 None Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence Illumina HiSeq 2500 GSE42550 GSM1044984 SRR620376 N single-end cotyledon 1 day after imbibition 0 R76_Germinating_Cotyledons_Stage1_BR1 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044985 SRR620377 N single-end cotyledon 1 day after imbibition 0 R84_Germinating_Cotyledons_Stage1_BR2 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044986 SRR620378 N single-end cotyledon 2 day after imbibition 0 R77_Germinating_Cotyledons_Stage2_BR1 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044987 SRR620379 N single-end cotyledon 2 day after imbibition 0 R85_Germinating_Cotyledons_Stage2_BR2 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044988 SRR620380 N single-end cotyledon 2-3 days after planting 0 R78_Germinating_Cotyledons_Stage3_BR1 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044989 SRR620381 N single-end cotyledon 2-3 days after planting 0 R86_Germinating_Cotyledons_Stage3_BR2 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044990 SRR620382 N single-end cotyledon 3-4 days after planting 0 R79_Germinating_Cotyledons_Stage4_BR1 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044991 SRR620383 N single-end cotyledon 3-4 days after planting 0 R87_Germinating_Cotyledons_Stage4_BR2 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044992 SRR620384 N single-end cotyledon 4-5 days after planting 0 R80_Germinating_Cotyledons_Stage5_BR1 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044993 SRR620385 N single-end cotyledon 4-5 days after planting 0 R88_Germinating_Cotyledons_Stage5_BR2 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044994 SRR620386 N single-end cotyledon 5-6 days after planting 0 R81_Germinating_Cotyledons_Stage6_BR1 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044995 SRR620387 N single-end cotyledon 5-6 days after planting 0 R89_Germinating_Cotyledons_Stage6_BR2 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044996 SRR620388 N single-end cotyledon 6-7 days after planting 0 R82_Germinating_Cotyledons_Stage7_BR1 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE42550 GSM1044997 SRR620389 N single-end cotyledon 6-7 days after planting 0 R90_Germinating_Cotyledons_Stage7_BR2 Williams Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling Illumina HiSeq 2000 GSE49097 GSM1193705 SRR942068 N single-end leaf None 1 high vapor pressure deficit(VPD) Hutchesen Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193706 SRR942069 N single-end leaf None 1 high vapor pressure deficit(VPD) PI471938 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193707 SRR942070 N single-end leaf None 1 high vapor pressure deficit(VPD) PI416937 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193708 SRR942071 N single-end leaf None 1 high vapor pressure deficit(VPD) PI416937 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193709 SRR942072 N single-end leaf None 1 high vapor pressure deficit(VPD) PI471938 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193710 SRR942073 N single-end leaf None 1 high vapor pressure deficit(VPD) Hutchesen Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193711 SRR942074 N single-end leaf None 0 low vapor pressure deficit(VPD) Hutchesen Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193712 SRR942075 N single-end leaf None 0 low vapor pressure deficit(VPD) PI471938 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193713 SRR942076 N single-end leaf None 0 low vapor pressure deficit(VPD) PI416937 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193714 SRR942077 N single-end leaf None 0 low vapor pressure deficit(VPD) Hutchesen Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193715 SRR942078 N single-end leaf None 0 low vapor pressure deficit(VPD) PI416937 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE49097 GSM1193716 SRR942079 N single-end leaf None 0 low vapor pressure deficit(VPD) PI471938 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit Illumina HiSeq 2000 GSE54903 GSM1326387 SRR1168173 N single-end seed_coat 50-100mg seed weight stage 0 Clark_standard Clark RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE54903 GSM1326388 SRR1168174 N single-end seed_coat 100-200mg seed weight stage 0 Clark_standard Clark RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina Genome Analyzer II GSE54903 GSM1326389 SRR1168175 N single-end seed_coat 400-500mg seed weight stage 0 Clark_standard Clark RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE54903 GSM1326390 SRR1168176 Y single-end seed_coat 50-100mg seed weight stage 1 Clark_defective Clark RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE54903 GSM1326391 SRR1168177 Y single-end seed_coat 100-200mg seed weight stage 1 Clark_defective Clark RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina Genome Analyzer II GSE54903 GSM1326392 SRR1168178 Y single-end seed_coat 400-500mg seed weight stage 1 Clark_defective Clark RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE54903 GSM1326393 SRR1168179 N single-end seed_coat 50-100mg seed weight stage 0 Harosoy_standard Harosoy RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE54903 GSM1326394 SRR1168180 N single-end seed_coat 100-200mg seed weight stage 0 Harosoy_standard Harosoy RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina Genome Analyzer II GSE54903 GSM1326395 SRR1168181 N single-end seed_coat 400-500mg seed weight stage 0 Harosoy_standard Harosoy RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE54903 GSM1326396 SRR1168182 Y single-end seed_coat 50-100mg seed weight stage 1 Harosoy_defective Harosoy RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE54903 GSM1326397 SRR1168183 Y single-end seed_coat 100-200mg seed weight stage 1 Harosoy_defective Harosoy RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina Genome Analyzer II GSE54903 GSM1326398 SRR1168184 Y single-end seed_coat 400-500mg seed weight stage 1 Harosoy_defective Harosoy RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts Illumina HiSeq 2000 GSE48524 GSM1180272 SRR925830 N paired-end stem None 1 P. sojae inoculated Williams Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180273 SRR925831 N paired-end stem None 1 P. sojae inoculated Rps1-a Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180274 SRR925832 N paired-end stem None 1 P. sojae inoculated Rps1-b Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180275 SRR925833 N paired-end stem None 1 P. sojae inoculated Rps1-c Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180276 SRR925834 N paired-end stem None 1 P. sojae inoculated Rps1-k Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180277 SRR925835 N paired-end stem None 1 P. sojae inoculated Rps3-a Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180278 SRR925836 N paired-end stem None 1 P. sojae inoculated Rps3-b Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180279 SRR925837 N paired-end stem None 1 P. sojae inoculated Rps3-c Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180280 SRR925838 N paired-end stem None 1 P. sojae inoculated Rps4 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180281 SRR925839 N paired-end stem None 1 P. sojae inoculated Rps5 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180282 SRR925840 N paired-end stem None 1 P. sojae inoculated Rps6 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180283 SRR925841 N paired-end stem None 0 mock-inoculated Williams Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180284 SRR925842 N paired-end stem None 0 mock-inoculated Rps1-a Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180285 SRR925843 N paired-end stem None 0 mock-inoculated Rps1-b Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180286 SRR925844 N paired-end stem None 0 mock-inoculated Rps1-c Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180287 SRR925845 N paired-end stem None 0 mock-inoculated Rps1-k Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180288 SRR925846 N paired-end stem None 0 mock-inoculated Rps3-a Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180289 SRR925847 N paired-end stem None 0 mock-inoculated Rps3-b Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180290 SRR925848 N paired-end stem None 0 mock-inoculated Rps3-c Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180291 SRR925849 N paired-end stem None 0 mock-inoculated Rps4 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180292 SRR925850 N paired-end stem None 0 mock-inoculated Rps5 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE48524 GSM1180293 SRR925851 N paired-end stem None 0 mock-inoculated Rps6 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae Illumina HiScanSQ GSE46153 GSM1125101 SRR830182 N paired-end embryo 5 days post initial seed size of 3-4 mm long 0 Day 5, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125102 SRR830183 N paired-end embryo 5 days post initial seed size of 3-4 mm long 0 Day 5, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125103 SRR830184 N paired-end embryo 5 days post initial seed size of 3-4 mm long 0 Day 5, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125104 SRR830185 N paired-end embryo 10 days post initial seed size of 3-4 mm long 0 Day 10, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125105 SRR830186 N paired-end embryo 10 days post initial seed size of 3-4 mm long 0 Day 10, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125106 SRR830187 N paired-end embryo 10 days post initial seed size of 3-4 mm long 0 Day 10, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125107 SRR830188 N paired-end embryo 15 days post initial seed size of 3-4 mm long 0 Day 15, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125108 SRR830189 N paired-end embryo 15 days post initial seed size of 3-4 mm long 0 Day 15, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125109 SRR830190 N paired-end embryo 15 days post initial seed size of 3-4 mm long 0 Day 15, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125110 SRR830191 N paired-end embryo 20 days post initial seed size of 3-4 mm long 0 Day 20, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125111 SRR830192 N paired-end embryo 20 days post initial seed size of 3-4 mm long 0 Day 20, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125112 SRR830193 N paired-end embryo 20 days post initial seed size of 3-4 mm long 0 Day 20, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125113 SRR830194 N paired-end embryo 25 days post initial seed size of 3-4 mm long 0 Day 25, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125114 SRR830195 N paired-end embryo 25 days post initial seed size of 3-4 mm long 0 Day 25, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125115 SRR830196 N paired-end embryo 25 days post initial seed size of 3-4 mm long 0 Day 25, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125116 SRR830197 N paired-end embryo 30 days post initial seed size of 3-4 mm long 0 Day 30, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125117 SRR830198 N paired-end embryo 30 days post initial seed size of 3-4 mm long 0 Day 30, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125118 SRR830199 N paired-end embryo 30 days post initial seed size of 3-4 mm long 0 Day 30, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125119 SRR830200 N paired-end embryo 35 days post initial seed size of 3-4 mm long 0 Day 35, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125120 SRR830201 N paired-end embryo 35 days post initial seed size of 3-4 mm long 0 Day 35, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125121 SRR830202 N paired-end embryo 35 days post initial seed size of 3-4 mm long 0 Day 35, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125122 SRR830203 N paired-end embryo 40 days post initial seed size of 3-4 mm long 0 Day 40, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125123 SRR830204 N paired-end embryo 40 days post initial seed size of 3-4 mm long 0 Day 40, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125124 SRR830205 N paired-end embryo 40 days post initial seed size of 3-4 mm long 0 Day 40, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125125 SRR830206 N paired-end embryo 45 days post initial seed size of 3-4 mm long 0 Day 45, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125126 SRR830207 N paired-end embryo 45 days post initial seed size of 3-4 mm long 0 Day 45, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125127 SRR830208 N paired-end embryo 45 days post initial seed size of 3-4 mm long 0 Day 45, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125128 SRR830209 N paired-end embryo 55 days post initial seed size of 3-4 mm long 0 Day 55, rep 1 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125129 SRR830210 N paired-end embryo 55 days post initial seed size of 3-4 mm long 0 Day 55, rep 2 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE46153 GSM1125130 SRR830211 N paired-end embryo 55 days post initial seed size of 3-4 mm long 0 Day 55, rep 3 Williams 82 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos Illumina HiSeq 2000 GSE42871 GSM1056094 SRR639162 N paired-end seed 4 days after flowering 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina Genome Analyzer II GSE42871 GSM1056095 SRR639163 N single-end seed 4 days after flowering 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056096 SRR639164 N paired-end seed 12-14 days after flowering 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina Genome Analyzer II GSE42871 GSM1056097 SRR639165 N single-end seed 12-14 days after flowering 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056098 SRR639166 N single-end seed 22-24 days after flowering 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056099 SRR639167 N single-end seed 22-24 days after flowering 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056100 SRR639168 N paired-end seed 5-6mg fresh weight 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina Genome Analyzer II GSE42871 GSM1056101 SRR639169 N single-end seed 5-6mg fresh weight 0 fresh frozen, no purification Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056102 SRR639170 N single-end cotyledon 100-200mg fresh weight 0 lyophilized, purification: Qiagen Rneasy Midi kit Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina Genome Analyzer II GSE42871 GSM1056103 SRR639171 N single-end cotyledon 100-200mg fresh weight 0 lyophilized, purification: Qiagen Rneasy Midi kit Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056104 SRR639172 N paired-end cotyledon 400-500mg fresh weight 0 lyophilized, purification: Qiagen Rneasy Midi kit Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina Genome Analyzer II GSE42871 GSM1056105 SRR639173 N single-end cotyledon 400-500mg fresh weight 0 lyophilized, purification: Qiagen Rneasy Midi kit Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056106 SRR639174 N paired-end seed dry mature seed 0 room temperature, purification: Qiagen Rneasy Midi kit Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina Genome Analyzer II GSE42871 GSM1056107 SRR639175 N single-end seed dry mature seed 0 room temperature Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056108 SRR639176 N single-end cotyledon 5-6mg fresh weight 0 fresh frozen Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE42871 GSM1056109 SRR639177 N single-end seed_coat 5-6mg fresh weight 0 fresh frozen Williams 43 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity Illumina HiSeq 2000 GSE29163 GSM721725 SRR203351 N single-end seed globular-stage embryo 0 Soybean seeds containing globular-stage embryos Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721726 SRR203354 N single-end seed heart-stage embryo 0 Soybean seeds containing heart-stage embryos Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721727 SRR203356 N single-end seed cotyledon-stage embryo 0 Soybean seeds containing cotyledon-stage embryos Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721728 SRR203358 N single-end seed early maturation-stage embryo 0 Soybean seeds containing early-maturation stage seeds Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721729 SRR203361 N single-end seed dry 0 Dry seeds Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721730 SRR203363 N single-end leaf None 0 Trifoliate leaves Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721731 SRR203364 N single-end root None 0 Roots Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721732 SRR203365 N single-end stem None 0 Stems Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721733 SRR203366 N single-end flower_bud None 0 Floral buds Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE29163 GSM721734 SRR203368 N single-end seedling 6 days after imbibition 0 Whole seedlings six days after imbibition Williams 82 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle Illumina HiSeq 2000 GSE46096 GSM1123204 SRR827653 N single-end embryo_axis seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Axis Parenchyma-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123205 SRR827655 N single-end embryo_axis seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Axis Parenchyma-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123206 SRR827656 N single-end embryo_axis seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Axis Parenchyma-Biological replicate 4 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123207 SRR827657 N single-end embryo_axis seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Axis Vasculature-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123208 SRR827661 N single-end embryo_axis seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Axis Vasculature-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123209 SRR827666 N single-end cotyledon seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Cotyledon Abaxial Epidermis-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123210 SRR827668 N single-end cotyledon seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Cotyledon Abaxial Epidermis-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123211 SRR827670 N single-end cotyledon seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Cotyledon Abaxial Epidermis-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123212 SRR827672 N single-end cotyledon seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Cotyledon Vasculature-Biological replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123213 SRR827673 N single-end cotyledon seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Cotyledon Vasculature-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123214 SRR827675 N single-end endosperm seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Endosperm-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123215 SRR827677 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Hilum-Biological Replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123216 SRR827679 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Hilum-Biological Replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123217 SRR827680 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Hilum-Biological Replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123218 SRR827681 N single-end root_tip seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Root Tip-Biological replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123219 SRR827684 N single-end root_tip seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Root Tip-Biological replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123220 SRR827687 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Hourglass-Biological Replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123221 SRR827689 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Hourglass-Biological Replicate 2 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123222 SRR827691 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Hourglass-Biological Replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123223 SRR827693 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Palisade-Biological Replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123224 SRR827695 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Palisade-Biological Replicate 3 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE46096 GSM1123225 SRR827697 N single-end seed_coat seeds ranging 6.0-7.0mm in length 0 Soybean Early Maturation Seed Coat Parenchyma-Biological Replicate 1 Williams 82 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage Illumina HiSeq 2000 GSE34875 GSM856142 SRR394316 N single-end root 14 days after germination 0 mRNA-seq of roots cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE34875 GSM856143 SRR394317 N single-end stem 14 days after germination 0 mRNA-seq of stems cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE34875 GSM856144 SRR394318 N single-end leaf 14 days after germination 0 mRNA-seq of leaves cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE34875 GSM856145 SRR394319 N single-end cotyledon 20 days after flowering 0 mRNA-seq of cotyledons cultivar Heinong44 Analysis of soybean DNA methylomes shows CHH hypermethylation enhances gene expression in cotyledons of developing seeds Illumina Genome Analyzer IIx GSE37895 GSM1213857 SRR955406 N single-end embryo_axis Early maturation-stage 0 Early maturation-stage embryonic axis [RNA-seq] Williams 82 Methylation Changes in Soybean Early Maturation Seed Parts Illumina HiSeq 2000 GSE114074 GSM3132197 SRR7124207 N single-end leaf None 0 mRNA gmax FC33243 Anderson FC33243 Anderson Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132198 SRR7124208 N single-end leaf None 0 mRNA gmax PI548360 Korean PI548360 Korean Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132199 SRR7124209 N single-end leaf None 0 mRNA gmax PI548362 Lincoln PI548362 Lincoln Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132200 SRR7124210 N single-end leaf None 0 mRNA gmax PI548379 Mandarin PI548379 Mandarin Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132201 SRR7124211 N single-end leaf None 0 mRNA gmax PI548391 Mukden PI548391 Mukden Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132202 SRR7124212 N single-end leaf None 0 mRNA gmax PI548406 Richland PI548406 Richland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132203 SRR7124213 N single-end leaf None 0 mRNA gmax PI548456 Haberlandt PI548456 Haberlandt Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132204 SRR7124214 N single-end leaf None 0 mRNA gmax PI548477 Ogden PI548477 Ogden Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132205 SRR7124215 N single-end leaf None 0 mRNA gmax PI548484 Ralsoy PI548484 Ralsoy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132206 SRR7124216 N single-end leaf None 0 mRNA gmax PI548485 Roanoke PI548485 Roanoke Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132207 SRR7124217 N single-end leaf None 0 mRNA gmax PI548488 S-100 PI548488 S-100 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132208 SRR7124218 N single-end leaf None 0 mRNA gmax PI508266 Young PI508266 Young Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132209 SRR7124219 N single-end leaf None 0 mRNA gmax PI548493 Tokyo PI548493 Tokyo Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132210 SRR7124220 N single-end leaf None 0 mRNA gmax PI548505 Amcor PI548505 Amcor Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132211 SRR7124221 N single-end leaf None 0 mRNA gmax PI548510 Beeson PI548510 Beeson Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132212 SRR7124222 N single-end leaf None 0 mRNA gmax PI548512 Century PI548512 Century Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132213 SRR7124223 N single-end leaf None 0 mRNA gmax PI548516 Blackhawk PI548516 Blackhawk Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132214 SRR7124224 N single-end leaf None 0 mRNA gmax PI548517 Bonus PI548517 Bonus Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132215 SRR7124225 N single-end leaf None 0 mRNA gmax PI548523 Pella PI548523 Pella Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132216 SRR7124226 N single-end leaf None 0 mRNA gmax PI548527 Calland PI548527 Calland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132217 SRR7124227 N single-end leaf None 0 mRNA gmax PI548530 Chippewa PI548530 Chippewa Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132218 SRR7124228 N single-end leaf None 0 mRNA gmax PI548533 Clark PI548533 Clark Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132219 SRR7124229 N single-end leaf None 0 mRNA gmax PI518671 Williams82 PI518671 Williams 82 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132220 SRR7124230 N single-end leaf None 0 mRNA gmax PI548540 Corsoy PI548540 Corsoy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132221 SRR7124231 N single-end leaf None 0 mRNA gmax PI548542 Cumberland PI548542 Cumberland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132222 SRR7124232 N single-end leaf None 0 mRNA gmax PI548543 Oakland PI548543 Oakland Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132223 SRR7124233 N single-end leaf None 0 mRNA gmax PI548545 Merit PI548545 Merit Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132224 SRR7124234 N single-end leaf None 0 mRNA gmax PI548555 Douglas PI548555 Douglas Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132225 SRR7124235 N single-end leaf None 0 mRNA gmax PI548562 Ford PI548562 Ford Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132226 SRR7124236 N single-end leaf None 0 mRNA gmax PI548570 Harcor PI548570 Harcor Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132227 SRR7124237 N single-end leaf None 0 mRNA gmax PI548573 Harosoy PI548573 Harosoy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132228 SRR7124238 N single-end leaf None 0 mRNA gmax PI548574 Shelby PI548574 Shelby Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132229 SRR7124239 N single-end leaf None 0 mRNA gmax PI548577 Hawkeye PI548577 Hawkeye Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132230 SRR7124240 N single-end leaf None 0 mRNA gmax PI518673 Lawrence PI518673 Lawrence Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132231 SRR7124241 N single-end leaf None 0 mRNA gmax PI548586 Kent PI548586 Kent Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132232 SRR7124242 N single-end leaf None 0 mRNA gmax PI548603 Perry PI548603 Perry Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132233 SRR7124243 N single-end leaf None 0 mRNA gmax PI548628 Wayne PI548628 Wayne Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132234 SRR7124244 N single-end leaf None 0 mRNA gmax PI548631 Williams PI548631 Williams Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132235 SRR7124245 N single-end leaf None 0 mRNA gmax PI548632 Woodworth PI548632 Woodworth Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132236 SRR7124246 N single-end leaf None 0 mRNA gmax PI548634 Zane PI548634 Zane Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132237 SRR7124247 N single-end leaf None 0 mRNA gmax PI548654 Hill PI548654 Hill Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132238 SRR7124248 N single-end leaf None 0 mRNA gmax PI548657 Jackson PI548657 Jackson Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132239 SRR7124249 N single-end leaf None 0 mRNA gmax PI548975 Centennial PI548975 Centennial Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132240 SRR7124250 N single-end leaf None 0 mRNA gmax PI548980 Hood PI548980 Hood Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132241 SRR7124251 N single-end leaf None 0 mRNA gmax PI548298 A.K.(Harrow) PI548298 A.K.(Harrow) Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132242 SRR7124252 N single-end leaf None 0 mRNA gmax PI548983 Tracy PI548983 Tracy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132243 SRR7124253 N single-end leaf None 0 mRNA gmax PI548986 Brim PI548986 Brim Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132244 SRR7124254 N single-end leaf None 0 mRNA gmax PI548987 Dare PI548987 Dare Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132245 SRR7124255 N single-end leaf None 0 mRNA gmax PI548988 Pickett PI548988 Pickett Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132246 SRR7124256 N single-end leaf None 0 mRNA gmax PI548989 Ransom PI548989 Ransom Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132247 SRR7124257 N single-end leaf None 0 mRNA gmax PI553039 Davis PI553039 Davis Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132248 SRR7124258 N single-end leaf None 0 mRNA gmax PI553046 Gasoy17 PI553046 Gasoy17 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132249 SRR7124259 N single-end leaf None 0 mRNA gmax PI572239 Holladay PI572239 Holladay Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132250 SRR7124260 N single-end leaf None 0 mRNA gmax PI617045 NC-Roy PI617045 NC-Roy Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132251 SRR7124261 N single-end leaf None 0 mRNA gmax PI630984 5601T PI630984 5601T Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132252 SRR7124262 N single-end leaf None 0 mRNA gmax PI548311 Capital PI548311 Capital Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132253 SRR7124263 N single-end leaf None 0 mRNA gmax PI641156 NC-Raleigh PI641156 NC-Raleigh Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132254 SRR7124264 N single-end leaf None 0 mRNA gmax PI88788 unnamed PI88788 unnamed Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132255 SRR7124265 N single-end leaf None 0 mRNA gmax PI548318 Dunfield PI548318 Dunfield Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132256 SRR7124266 N single-end leaf None 0 mRNA gmax PI548348 Illini PI548348 Illini Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132257 SRR7124267 N single-end leaf None 0 mRNA gmax PI548356 Kanro PI548356 Kanro Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132258 SRR7124268 N paired-end leaf None 0 mRNA gmax NAM02 TN05-3027 NAM02 TN05-3027 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132259 SRR7124269 N paired-end leaf None 0 mRNA gmax NAM03 4J105-3-4 NAM03 4J105-3-4 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132260 SRR7124270 N paired-end leaf None 0 mRNA gmax NAM04 5M20-2-5-2 NAM04 5M20-2-5-2 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132261 SRR7124271 N paired-end leaf None 0 mRNA gmax NAM05 CL0J095-4-6 NAM05 CL0J095-4-6 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132262 SRR7124272 N paired-end leaf None 0 mRNA gmax NAM06 CL0J173-6-8 NAM06 CL0J173-6-8 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132263 SRR7124273 N paired-end leaf None 0 mRNA gmax NAM08 HS6-3976 NAM08 HS6-3976 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132264 SRR7124274 N paired-end leaf None 0 mRNA gmax NAM09 Prohio NAM09 Prohio Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132265 SRR7124275 N paired-end leaf None 0 mRNA gmax NAM10 LD00-3309 NAM10 LD00-3309 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132266 SRR7124276 N paired-end leaf None 0 mRNA gmax NAM11 LD01-5907 NAM11 LD01-5907 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132267 SRR7124277 N paired-end leaf None 0 mRNA gmax NAM12 LD02-4485 NAM12 LD02-4485 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132268 SRR7124278 N paired-end leaf None 0 mRNA gmax NAM13 LD02-9050 NAM13 LD02-9050 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132269 SRR7124279 N paired-end leaf None 0 mRNA gmax NAM14 Magellan NAM14 Magellan Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132270 SRR7124280 N paired-end leaf None 0 mRNA gmax NAM15 Maverick NAM15 Maverick Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132271 SRR7124281 N paired-end leaf None 0 mRNA gmax NAM17 S06-13640 NAM17 S06-13640 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132272 SRR7124282 N paired-end leaf None 0 mRNA gmax NAM18 NE3001 NAM18 NE3001 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132273 SRR7124283 N paired-end leaf None 0 mRNA gmax NAM22 Skylla NAM22 Skylla Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132274 SRR7124284 N paired-end leaf None 0 mRNA gmax NAM23 U03-100612 NAM23 U03-100612 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132275 SRR7124285 N paired-end leaf None 0 mRNA gmax NAM24 LG03-2979 NAM24 LG03-2979 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132276 SRR7124286 N paired-end leaf None 0 mRNA gmax NAM25 LG03-3191 NAM25 LG03-3191 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132277 SRR7124287 N paired-end leaf None 0 mRNA gmax NAM26 LG04-4717 NAM26 LG04-4717 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132278 SRR7124288 N paired-end leaf None 0 mRNA gmax NAM27 LG05-4292 NAM27 LG05-4292 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132279 SRR7124289 N paired-end leaf None 0 mRNA gmax NAM28 LG05-4317 NAM28 LG05-4317 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132280 SRR7124290 N paired-end leaf None 0 mRNA gmax NAM29 LG05-4464 NAM29 LG05-4464 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132281 SRR7124291 N paired-end leaf None 0 mRNA gmax NAM30 LG05-4832 NAM30 LG05-4832 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132282 SRR7124292 N paired-end leaf None 0 mRNA gmax NAM31 LG90-2550 NAM31 LG90-2550 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132283 SRR7124293 N paired-end leaf None 0 mRNA gmax NAM32 LG92-1255 NAM32 LG92-1255 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132284 SRR7124294 N paired-end leaf None 0 mRNA gmax NAM33 LG94-1128 NAM33 LG94-1128 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132285 SRR7124295 N paired-end leaf None 0 mRNA gmax NAM34 LG94-1906 NAM34 LG94-1906 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132286 SRR7124296 N paired-end leaf None 0 mRNA gmax NAM36 LG97-7012 NAM36 LG97-7012 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132287 SRR7124297 N paired-end leaf None 0 mRNA gmax NAM37 LG98-1605 NAM37 LG98-1605 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132288 SRR7124298 N paired-end leaf None 0 mRNA gmax NAM38 LG00-3377 NAM38 LG00-3377 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132289 SRR7124299 N paired-end leaf None 0 mRNA gmax NAM39 LG04-6000 NAM39 LG04-6000 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132290 SRR7124300 N paired-end leaf None 0 mRNA gmax NAM40 PI398.881 NAM40 PI398.881 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132291 SRR7124301 N paired-end leaf None 0 mRNA gmax NAM41 PI427.136 NAM41 PI427.136 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132292 SRR7124302 N paired-end leaf None 0 mRNA gmax NAM42 PI437.169B NAM42 PI437.169B Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132293 SRR7124303 N paired-end leaf None 0 mRNA gmax NAM46 PI507.681B NAM46 PI507.681B Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132294 SRR7124304 N paired-end leaf None 0 mRNA gmax NAM48 PI518.751 NAM48 PI518.751 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132295 SRR7124305 N paired-end leaf None 0 mRNA gmax NAM50 PI561.370 NAM50 PI561.370 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132296 SRR7124306 N paired-end leaf None 0 mRNA gmax NAM54 PI404.188A NAM54 PI404.188A Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132297 SRR7124307 N paired-end leaf None 0 mRNA gmax NAM64 PI574.486 NAM64 PI574.486 Epigenomics of Glycine max Illumina HiSeq 2000 GSE114074 GSM3132298 SRR7124308 N paired-end leaf None 0 mRNA gmax NAM IA3023 NAM IA3023 Epigenomics of Glycine max Illumina HiSeq 2000 GSE94299 GSM2472701 SRR5220366 N single-end cotyledon 24 hours 0 mRNA 24h-2,4-D rep1,40 mg/l of 2,4 D medium, Embryo Initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472702 SRR5220367 N single-end cotyledon 24 hours 0 mRNA 24h-2,4-D rep2,40 mg/l of 2,4 D medium, Embryo Initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472703 SRR5220368 N single-end cotyledon 24 hours 0 mRNA 24h-2,4-D rep3,40 mg/l of 2,4 D medium, Embryo Initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472704 SRR5220369 N single-end cotyledon 24 hours 0 mRNA 24h+2,4-D rep1,40 mg/l of 2,4 D medium, Embryo Initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472705 SRR5220370 N single-end cotyledon 24 hours 0 mRNA 24h+2,4-D rep2,40 mg/l of 2,4 D medium, Embryo Initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472706 SRR5220371 N single-end cotyledon 24 hours 0 mRNA 24h+2,4-D rep3,40 mg/l of 2,4 D medium, Embryo Initiation Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472707 SRR5220372 N single-end embryo 6 weeks 0 mRNA 6 wk globular rep1,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472708 SRR5220373 N single-end embryo 6 weeks 0 mRNA 6 wk globular rep2,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472709 SRR5220374 N single-end embryo 6 weeks 0 mRNA 6 wk globular rep3,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472710 SRR5220375 N single-end embryo 6 weeks 0 mRNA 6 wk diff rep1,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472711 SRR5220376 N single-end embryo 6 weeks 0 mRNA 6 wk diff rep2,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472712 SRR5220377 N single-end embryo 6 weeks 0 mRNA 6 wk diff rep3,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472713 SRR5220378 N single-end embryo 10 weeks + 4 days 0 mRNA 4-day subculture rep1,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472714 SRR5220379 N single-end embryo 10 weeks + 4 days 0 mRNA 4-day subculture rep2,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472715 SRR5220380 N single-end embryo 10 weeks + 4 days 0 mRNA 4-day subculture rep3,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472716 SRR5220381 N single-end embryo 6 months 0 mRNA 6 mo globular rep1,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472717 SRR5220382 N single-end embryo 6 months 0 mRNA 6 mo globular rep2,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472718 SRR5220383 N single-end embryo 6 months 0 mRNA 6 mo globular rep3,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472719 SRR5220384 N single-end embryo 12 months 0 mRNA 12 mo globular,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472720 SRR5220385 N single-end embryo 12 months 0 mRNA 12 mo dif,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE94299 GSM2472721 SRR5220386 N single-end embryo 8 year 0 mRNA 8 yr globular,20 mg/l of 2,4 D medium, Embryo Maintenance Jack Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean Illumina HiSeq 2500 GSE69571 GSM1704039 SRR2051082 N paired-end leaf 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704040 SRR2051083 N paired-end leaf 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704041 SRR2051084 N paired-end leaf 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704042 SRR2051085 N paired-end leaf 4 hours 0 control None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704043 SRR2051086 N paired-end leaf 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704044 SRR2051087 N paired-end leaf 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704045 SRR2051088 N paired-end leaf 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE69571 GSM1704046 SRR2051089 N paired-end leaf 4 hours 1 salt stress None Identifying salt stress-responsive miRNAs and their targets in soybean Illumina HiSeq 2000 GSE77796 GSM2059583 SRR3160561 N paired-end leaf 14 days post-inoculation 0 Rsv1_Mock_RNA-seq Rsv1-genotype soybean,PI96983 Deep Sequencing Leads to the Identification of Eukaryotic Translation Initiation Factor 5A as a Key Element in Rsv1-Mediated Lethal Systemic Hypersensitive Response to Soybean Mosaic Virus Infection in Soybean Illumina MiSeq GSE77796 GSM2059584 SRR3160563 N paired-end leaf 14 days post-inoculation 1 Rsv1_SMV-L_RNA-seq Rsv1-genotype soybean,PI96983 Deep Sequencing Leads to the Identification of Eukaryotic Translation Initiation Factor 5A as a Key Element in Rsv1-Mediated Lethal Systemic Hypersensitive Response to Soybean Mosaic Virus Infection in Soybean Illumina MiSeq GSE77796 GSM2059585 SRR3160565 N paired-end leaf 14 days post-inoculation 1 Rsv1_SMV-G7_RNA-seq Rsv1-genotype soybean,PI96983 Deep Sequencing Leads to the Identification of Eukaryotic Translation Initiation Factor 5A as a Key Element in Rsv1-Mediated Lethal Systemic Hypersensitive Response to Soybean Mosaic Virus Infection in Soybean Illumina MiSeq GSE76636 GSM2029561 SRR3090710 N paired-end leaf 14 days post-inoculation 0 Williams82_Mock_RNA-seq Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq GSE76636 GSM2029562 SRR3090711 N paired-end leaf 14 days post-inoculation 1 Williams82_SMV-L_RNA-seq Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq GSE76636 GSM2029563 SRR3090712 N paired-end leaf 14 days post-inoculation 1 Williams82_SMV-LRB_RNA-seq Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq GSE76636 GSM2029564 SRR3090713 N paired-end leaf 14 days post-inoculation 1 Williams82_SMV-G7_RNA-seq Williams 82,Susceptible Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection Illumina MiSeq