id	control	treatment
1	SRR8659972,SRR8659973,SRR8659974	SRR8659978,SRR8659979,SRR8659980	GSE134050_seedling_mock treated--/--GSE134050_seedling_5 mM Pcz then with 1 mM BL 1h
2	SRR8659972,SRR8659973,SRR8659974	SRR8659975,SRR8659976,SRR8659977	GSE134050_seedling_mock treated--/--GSE134050_seedling_5 mM Pcz with 1 mM BL for 8h
3	SRR8659972,SRR8659973,SRR8659974	SRR8659969,SRR8659970,SRR8659971	GSE134050_seedling_mock treated--/--GSE134050_seedling_5 mM Pcz
4	SRR8659972,SRR8659973,SRR8659974	SRR8659966,SRR8659967,SRR8659968	GSE134050_seedling_mock treated--/--GSE134050_seedling_5 mM Pcz with 10 nM BL
5	SRR6831048,SRR6831049	SRR6831050,SRR6831051	GSE129509_leaf_Zn sufficient--/--GSE111799_leaf_Zn deficient
6	SRR6831052,SRR6831053	SRR6831054,SRR6831055	GSE111799_root_Zn sufficient--/--GSE111799_root_Zn deficient
7	SRR6078270,SRR6078271	SRR6078272,SRR6078273	GSE104286_leaf_Pi sufficient--/--GSE104286_leaf_Pi deficient
8	SRR7601335,SRR7601336,SRR7601337	SRR7601338,SRR7601339,SRR7601340	GSE117686_unifoliolate_leaf_cold treatment 0 hour--/--GSE117686_unifoliolate_leaf_cold treatment 1 hour
9	SRR7601335,SRR7601336,SRR7601337	SRR7601341,SRR7601342,SRR7601343	GSE117686_unifoliolate_leaf_cold treatment 0 hour--/--GSE117686_unifoliolate_leaf_cold treatment 24 hour
10	SRR1268082,SRR1268083,SRR1268084	SRR1268085,SRR1268086,SRR1268087	GSE57252_root_control,0h--/--GSE57252_root_dehydration treatment,1h
11	SRR1268082,SRR1268083,SRR1268084	SRR1268088,SRR1268089,SRR1268090	GSE57252_root_control,0h--/--GSE57252_root_dehydration treatment,6h
12	SRR1268082,SRR1268083,SRR1268084	SRR1268091,SRR1268092,SRR1268093	GSE57252_root_control,0h--/--GSE57252_root_dehydration treatment,12h
13	SRR1268082,SRR1268083,SRR1268084	SRR1268094,SRR1268095,SRR1268096	GSE57252_root_control,0h--/--GSE57252_root_salt treatment,1h
14	SRR1268082,SRR1268083,SRR1268084	SRR1268097,SRR1268098,SRR1268099	GSE57252_root_control,0h--/--GSE57252_root_salt treatment,6h
15	SRR1268082,SRR1268083,SRR1268084	SRR1268100,SRR1268101,SRR1268102	GSE57252_root_control,0h--/--GSE57252_root_salt treatment,12h
16	SRR12164947,SRR12164948,SRR12164949	SRR12164950,SRR12164951,SRR12164952	GSE153951_leaf_control--/--GSE153951_leaf_water deficit
17	SRR12164947,SRR12164948,SRR12164949	SRR12164953,SRR12164954,SRR12164955	GSE153951_leaf_control--/--GSE153951_leaf_heat stress
18	SRR12164947,SRR12164948,SRR12164949	SRR12164956,SRR12164957,SRR12164958	GSE153951_leaf_control--/--GSE153951_leaf_water deficit and heat stress
19	SRR10640786,SRR10640787,SRR10640788	SRR10640789,SRR10640790,SRR10640791	GSE141720_leaf_24 hours mock--/--GSE141720_leaf_24 hours after aphid infestation
20	SRR10640792,SRR10640793,SRR10640794	SRR10640795,SRR10640796,SRR10640797	GSE141720_leaf_48 hours mock--/--GSE141720_leaf_48 hours after aphid infestation
21	SRR10640798,SRR10640799,SRR10640800	SRR10640801,SRR10640802,SRR10640803	GSE141720_leaf_96 hours mock--/--GSE141720_leaf_96 hours after aphid infestation
22	SRR10640804,SRR10640805,SRR10640806	SRR10640807,SRR10640808,SRR10640809	GSE141720_leaf_24 hours mock--/--GSE141720_leaf_24 hours after aphid infestation
23	SRR10640810,SRR10640811,SRR10640812	SRR10640813,SRR10640814,SRR10640815	GSE141720_leaf_48 hours mock--/--GSE141720_leaf_48 hours after aphid infestation
24	SRR10640816,SRR10640817,SRR10640818	SRR10640819,SRR10640820,SRR10640821	GSE141720_leaf_96 hours mock--/--GSE141720_leaf_96 hours after aphid infestation
25	SRR10640822,SRR10640823,SRR10640824	SRR10640825,SRR10640826,SRR10640827	GSE141720_leaf_24 hours mock--/--GSE141720_leaf_24 hours after aphid infestation
26	SRR10640828,SRR10640829,SRR10640830	SRR10640831,SRR10640832,SRR10640833	GSE141720_leaf_48 hours mock--/--GSE141720_leaf_48 hours after aphid infestation
27	SRR10640834,SRR10640835,SRR10640836	SRR10640837,SRR10640838,SRR10640839	GSE141720_leaf_96 hours mock--/--GSE141720_leaf_96 hours after aphid infestation
28	SRR9113321,SRR9113322,SRR9113323,SRR9113324	SRR9113325,SRR9113326,SRR9113327,SRR9113328	GSE131686_root_hair_H2O treatment 24h--/--GSE131686_root_hair_wall glucan elicitor (WGE) treatment 24h
29	SRR9113329,SRR9113330,SRR9113331,SRR9113332	SRR9113333,SRR9113334,SRR9113335,SRR9113336	GSE131686_seed_H2O treatment 48h--/--GSE131686_seed_wall glucan elicitor (WGE) treatment 48h
30	SRR10098755,SRR10098756	SRR10098757,SRR10098758	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_2 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
31	SRR10098755,SRR10098756	SRR10098759,SRR10098760	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_4 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
32	SRR10098755,SRR10098756	SRR10098761,SRR10098762	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_6 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
33	SRR10098755,SRR10098756	SRR10098763,SRR10098764	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_8 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
34	SRR10098765,SRR10098766	SRR10098767,SRR10098768	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_2 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
35	SRR10098765,SRR10098766	SRR10098769,SRR10098770	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_4 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
36	SRR10098765,SRR10098766	SRR10098771,SRR10098772	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_6 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
37	SRR10098765,SRR10098766	SRR10098773,SRR10098774	GSE137263_leaf_0 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled--/--GSE137263_leaf_8 hours post mosaic virus (SMV) strain G7 (SMV-G7) inoculation sampled
38	SRR8937687,SRR8937688,SRR8937689	SRR8937690,SRR8937691,SRR8937692	GSE130138_root_noninfected--/--GSE130138_root_soybean cyst nematode(SCN)_infected
39	SRR8937693,SRR8937694,SRR8937695	SRR8937696,SRR8937697,SRR8937698	GSE130138_root_noninfected--/--GSE130138_root_soybean cyst nematode(SCN)_infected
40	SRR10337249,SRR10337250,SRR10337251	SRR10337252,SRR10337253,SRR10337254	GSE139303_leaf_mock treated with MgCl2--/--GSE139303_leaf_sample treated with Bradyrhizobium japonicum USDA122
41	SRR10337249,SRR10337250,SRR10337251	SRR10337255,SRR10337256,SRR10337257	GSE139303_leaf_mock treated with MgCl2--/--GSE139303_leaf_sample treated with Sinorhizobium fredii USDA257
42	SRR5163161,SRR5163162	SRR5163165,SRR5163166	GSE93322_seedling_WT,mock treatment for 6 hrs--/--GSE93322_seedling_WT NaCl,150 mM NaCl treatment for 6 hrs
43	SRR5163163,SRR5163164	SRR5163167,SRR5163168	GSE93322_seedling_GmSIN1 OE,mock treatment for 6 hrs--/--GSE93322_seedling_GmSIN1 OE NaCl,150 mM NaCl treatment for 6 hrs
44	SRR9622344,SRR9622345,SRR9622346	SRR9622347,SRR9622348,SRR9622349	GSE133574_root_wild type--/--GSE133574_root_salt-treated
45	SRR8427391,SRR8427392	SRR8427371,SRR8427383,SRR8427384	GSE125103_root_control_30d--/--GSE125103_root_treatment_soybean cyst nematode(SCN)_30d
46	SRR8427391,SRR8427392	SRR8427385,SRR8427386,SRR8427387	GSE125103_root_control_30d--/--GSE125103_root_treatment_Aphid_30d
47	SRR8427391,SRR8427392	SRR8427388,SRR8427389,SRR8427390	GSE125103_root_control_30d--/--GSE125103_root_treatment_soybean cyst nematode(SCN) and Aphid_30d
48	SRR8427405,SRR8427404,SRR8427407	SRR8427366,SRR8427367,SRR8427368	GSE125103_root_control_30d--/--GSE125103_root_treatment_soybean cyst nematode(SCN)_30d
49	SRR8427405,SRR8427404,SRR8427407	SRR8427369,SRR8427362,SRR8427363	GSE125103_root_control_30d--/--GSE125103_root_treatment_Aphid_30d
50	SRR8427405,SRR8427404,SRR8427407	SRR8427364,SRR8427365,SRR8427370	GSE125103_root_control_30d--/--GSE125103_root_treatment_soybean cyst nematode(SCN) and Aphid_30d
51	SRR8427396,SRR8427394,SRR8427372	SRR8427379,SRR8427380,SRR8427377	GSE125103_root_control_5d--/--GSE125103_root_treatment_soybean cyst nematode(SCN)_5d
52	SRR8427396,SRR8427394,SRR8427372	SRR8427378,SRR8427375,SRR8427376	GSE125103_root_control_5d--/--GSE125103_root_treatment_Aphid_5d
53	SRR8427396,SRR8427394,SRR8427372	SRR8427373,SRR8427374,SRR8427408	GSE125103_root_control_5d--/--GSE125103_root_treatment_soybean cyst nematode(SCN) and Aphid_5d
54	SRR8427397,SRR8427395,SRR8427393	SRR8427406,SRR8427401,SRR8427400	GSE125103_root_control_5d--/--GSE125103_root_treatment_soybean cyst nematode(SCN)_5d
55	SRR8427397,SRR8427395,SRR8427393	SRR8427403,SRR8427402,SRR8427399	GSE125103_root_control_5d--/--GSE125103_root_treatment_Aphid_5d
56	SRR8427397,SRR8427395,SRR8427393	SRR8427398,SRR8427381,SRR8427382	GSE125103_root_control_5d--/--GSE125103_root_treatment_soybean cyst nematode(SCN) and Aphid_5d
57	SRR6924895,SRR6924896,SRR6924897	SRR6924898,SRR6924899,SRR6924900	GSE112584_seedling_control_ph5.8_9days--/--GSE112584_seedling_treatment_ph3_9days
58	SRR6924901,SRR6924902,SRR6924903	SRR6924904,SRR6924905,SRR6924906	GSE112584_seedling_control_ph5.8_6days--/--GSE112584_seedling_treatment_ph3_6days
59	SRR7172314,SRR7172315,SRR7172316	SRR7172317,SRR7172318,SRR7172319	GSE114448_stem_non infected resistant soybean stem--/--GSE114448_stem_resistant soybean stem 24 hours post sclerotinia infection
60	SRR7172314,SRR7172315,SRR7172316	SRR7172320,SRR7172321,SRR7172322	GSE114448_stem_non infected resistant soybean stem--/--GSE114448_stem_resistant soybean stem 48 hours post sclerotinia infection
61	SRR7172314,SRR7172315,SRR7172316	SRR7172323,SRR7172324,SRR7172325	GSE114448_stem_non infected resistant soybean stem--/--GSE114448_stem_resistant soybean stem 96 hours post sclerotinia infection
62	SRR7172326,SRR7172327,SRR7172328	SRR7172329,SRR7172330,SRR7172331	GSE114448_stem_non infected susceptible soybean stem--/--GSE114448_stem_susceptible soybean stem 24 hours post sclerotinia infection
63	SRR7172326,SRR7172327,SRR7172328	SRR7172332,SRR7172333,SRR7172334	GSE114448_stem_non infected susceptible soybean stem--/--GSE114448_stem_susceptible soybean stem 48 hours post sclerotinia infection
64	SRR7172326,SRR7172327,SRR7172328	SRR7172335,SRR7172336,SRR7172337	GSE114448_stem_non infected susceptible soybean stem--/--GSE114448_stem_susceptible soybean stem 96 hours post sclerotinia infection
65	SRR3680368,SRR3680373	SRR3680378,SRR3680383	GSE83481_embryo_axis_dry--/--GSE83481_embryo_axis_3 hours after imbibition
66	SRR3680368,SRR3680373	SRR3680388,SRR3680393	GSE83481_embryo_axis_dry--/--GSE83481_embryo_axis_6 hours after imbibition
67	SRR3680368,SRR3680373	SRR3680398,SRR3680403	GSE83481_embryo_axis_dry--/--GSE83481_embryo_axis_12 hours after imbibition
68	SRR3680368,SRR3680373	SRR3680408,SRR3680413	GSE83481_embryo_axis_dry--/--GSE83481_embryo_axis_24 hours after imbibition
69	SRR1914574,SRR1914575,SRR1914576	SRR1914580,SRR1914581,SRR1914582	GSE66861_seedling_control,72 hours post inoculation--/--GSE66861_seedling_72 hours post FO36 non-pathogenic fusarium oxysporum inoculation
70	SRR1914574,SRR1914575,SRR1914576	SRR1914586,SRR1914587,SRR1914588	GSE66861_seedling_control,72 hours post inoculation--/--GSE66861_seedling_72 hours post FO40 pathogenic fusarium oxysporum inoculation
71	SRR1914577,SRR1914578,SRR1914579	SRR1914583,SRR1914584,SRR1914585	GSE66861_seedling_control,96 hours post inoculation--/--GSE66861_seedling_96 hours post FO36 non-pathogenic fusarium oxysporum inoculation
72	SRR1914577,SRR1914578,SRR1914579	SRR1914589,SRR1914590,SRR1914591	GSE66861_seedling_control,96 hours post inoculation--/--GSE66861_seedling_96 hours post FO40 pathogenic fusarium oxysporum inoculation
73	SRR1506089,SRR1506090	SRR1506091,SRR1506092	GSE59076_leaf_25ppb ozone,control,1 time point--/--GSE59076_leaf_75ppb ozone,treatment,1 time point
74	SRR1506093,SRR1506094	SRR1506095,SRR1506096	GSE59076_leaf_25ppb ozone,control,2 time point--/--GSE59076_leaf_75ppb ozone,treatment,2 time point
75	SRR1506099,SRR1506100	SRR1506097,SRR1506098	GSE59076_leaf_25ppb ozone,control,3 time point--/--GSE59076_leaf_75ppb ozone,treatment,3 time point
76	SRR1506101,SRR1506102	SRR1506103,SRR1506104	GSE59076_leaf_25ppb ozone,control,4 time point--/--GSE59076_leaf_75ppb ozone,treatment,4 time point
77	SRR2048170,SRR2048171,SRR2048172	SRR2048167,SRR2048168,SRR2048169	GSE69469_leaf_ZT0_8h_control--/--GSE69469_leaf_ZT0_8h_water_deficit
78	SRR2048176,SRR2048177,SRR2048178	SRR2048173,SRR2048174,SRR2048175	GSE69469_leaf_ZT4_12h_control--/--GSE69469_leaf_ZT4_12h_water_deficit
79	SRR2048182,SRR2048183,SRR2048184	SRR2048179,SRR2048180,SRR2048181	GSE69469_leaf_ZT8_16h_control--/--GSE69469_leaf_ZT8_16h_water_deficit
80	SRR2048188,SRR2048189,SRR2048190	SRR2048185,SRR2048186,SRR2048187	GSE69469_leaf_ZT12_20h_control--/--GSE69469_leaf_ZT12_20h_water_deficit
81	SRR2048194,SRR2048195,SRR2048196	SRR2048191,SRR2048192,SRR2048193	GSE69469_leaf_ZT16_24h_control--/--GSE69469_leaf_ZT16_24h_water_deficit
82	SRR2048200,SRR2048201,SRR2048202	SRR2048197,SRR2048198,SRR2048199	GSE69469_leaf_ZT20_4h_control--/--GSE69469_leaf_ZT20_4h_water_deficit
83	SRR8847718,SRR8847719,SRR8847720	SRR8847715,SRR8847716,SRR8847717	GSE129320_root_high pH,pH=5.8--/--GSE129320_root_low pH,pH=4.2
84	SRR7468248,SRR7468249,SRR7468250	SRR7468251,SRR7468252,SRR7468253	GSE116593_nodule_HP,phosphorus conccentration: 500 mM--/--GSE116593_nodule_LP,phosphorus conccentration:25 mM
85	SRR942074,SRR942077	SRR942068,SRR942073	GSE49097_leaf_low vapor pressure deficit(VPD)--/--GSE49097_leaf_high vapor pressure deficit(VPD)
86	SRR942075,SRR942079	SRR942069,SRR942072	GSE49097_leaf_low vapor pressure deficit(VPD)--/--GSE49097_leaf_high vapor pressure deficit(VPD)
87	SRR942076,SRR942078	SRR942070,SRR942071	GSE49097_leaf_low vapor pressure deficit(VPD)--/--GSE49097_leaf_high vapor pressure deficit(VPD)
88	SRR2051082,SRR2051083,SRR2051084,SRR2051085	SRR2051086,SRR2051087,SRR2051088,SRR2051089	GSE69571_leaf_control--/--GSE69571_leaf_salt stress
89	SRR1965003,SRR1965008	SRR1965004,SRR1965009	GSE67779_leaf_no aphids,susceptible--/--GSE67779_leaf_4h after aphid infestation,susceptible
90	SRR1965003,SRR1965008	SRR1965005,SRR1965010	GSE67779_leaf_no aphids,susceptible--/--GSE67779_leaf_8h after aphid infestation,susceptible
91	SRR1965003,SRR1965008	SRR1965006,SRR1965011	GSE67779_leaf_no aphids,susceptible--/--GSE67779_leaf_24h after aphid infestation,susceptible
92	SRR1965003,SRR1965008	SRR1965007,SRR1965012	GSE67779_leaf_no aphids,susceptible--/--GSE67779_leaf_48h after aphid infestation,susceptible
93	SRR1965013,SRR1965018	SRR1965014,SRR1965019	GSE67779_leaf_no aphids,resistant--/--GSE67779_leaf_4h after aphid infestation,resistant
94	SRR1965013,SRR1965018	SRR1965015,SRR1965020	GSE67779_leaf_no aphids,resistant--/--GSE67779_leaf_8h after aphid infestation,resistant
95	SRR1965013,SRR1965018	SRR1965016,SRR1965021	GSE67779_leaf_no aphids,resistant--/--GSE67779_leaf_24h after aphid infestation,resistant
96	SRR1965013,SRR1965018	SRR1965017,SRR1965022	GSE67779_leaf_no aphids,resistant--/--GSE67779_leaf_48h after aphid infestation,resistant