GSE135614	GSM4023431	SRR9937395	SINGLE	spikelet	6th days after fertilization	sRNA basal spikelets	Mahalaxmi	Identification of known and novel miRNAs in the apical and basal spikelets of rice Oryza sativa cv. Mahalaxmi	Ion Torrent Proton
GSE135614	GSM4023430	SRR9937394	SINGLE	spikelet	6th days after fertilization	sRNA apical spikelets	Mahalaxmi	Identification of known and novel miRNAs in the apical and basal spikelets of rice Oryza sativa cv. Mahalaxmi	Ion Torrent Proton
GSE50778	GSM1229047	SRR976171	SINGLE	lamina_joint	none	wild type	Nipponbare	Control of agricultural traits by hc-siRNA associated MITEs in rice	Illumina HiSeq 2000
GSE131319	GSM3769093	SRR9070102	SINGLE	shoot_base	4-week	WT_base	japonica	Control of Rice Tillering by RNA-directed DNA Methylation at Miniature Inverted-repeat Transposable Elements	Illumina HiSeq 2500
GSE131319	GSM3769092	SRR9070101	SINGLE	shoot_base	4-week	WT_base	japonica	Control of Rice Tillering by RNA-directed DNA Methylation at Miniature Inverted-repeat Transposable Elements	Illumina HiSeq 2500
GSE131319	GSM3769091	SRR9070100	SINGLE	shoot_base	4-week	WT_base	japonica	Control of Rice Tillering by RNA-directed DNA Methylation at Miniature Inverted-repeat Transposable Elements	Illumina HiSeq 2500
GSE127665	GSM3636340	SRR8649147	SINGLE	panicle	reproductive stage	panicle tissue	none	Evolution of heterochromatin and heterochromatin genes in the Oryza genomes reveals a new heterochromatin-euchromatin boundary [ncRNA-Seq]	Illumina HiSeq 2000
GSE123079	GSM3494797	SRR8258073	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding_late	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494795	SRR8258071	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding_late	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494794	SRR8258070	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding_late	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494793	SRR8258069	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding_early	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494792	SRR8258068	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding_early	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494791	SRR8258067	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding_early	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494789	SRR8258065	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494787	SRR8258063	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494785	SRR8258061	SINGLE	leaf_sheath	four-leaf stage	S_bph feeding	Nipponbare	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494784	SRR8258060	SINGLE	leaf_sheath	four-leaf stage	R_bph_late	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494783	SRR8258059	SINGLE	leaf_sheath	four-leaf stage	R_bph_late	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494782	SRR8258058	SINGLE	leaf_sheath	four-leaf stage	R_bph_late	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494781	SRR8258057	SINGLE	leaf_sheath	four-leaf stage	R_bph_eaR_bphly	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494779	SRR8258055	SINGLE	leaf_sheath	four-leaf stage	R_bph_eaR_bphly	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494777	SRR8258053	SINGLE	leaf_sheath	four-leaf stage	R_bph_eaR_bphly	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494775	SRR8258051	SINGLE	leaf_sheath	four-leaf stage	R_bph	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494774	SRR8258050	SINGLE	leaf_sheath	four-leaf stage	R_bph	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE123079	GSM3494772	SRR8258048	SINGLE	leaf_sheath	four-leaf stage	R_bph	BPH6-transgenic line	A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]	HiSeq X Ten
GSE44898	GSM1093505	SRR771501	SINGLE	embryo	3 weeks	Embryo Cultivar Kitaake KEA	Kitaake	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE44898	GSM1093504	SRR771500	SINGLE	endosperm	3 weeks	Endosperm Cultivar Kitaake KNA	Kitaake	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE44898	GSM1093503	SRR771499	SINGLE	embryo	3 weeks	Embryo Cultivar Kitaake NEA	Kitaake	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE44898	GSM1093502	SRR771498	SINGLE	endosperm	3 weeks	Endosperm Cultivar Nipponbare NNA	Nipponbare	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE44898	GSM1093501	SRR771497	SINGLE	shoot	3 weeks	Shoot Cultivar Nipponbare RSG	Nipponbare	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE44898	GSM1093500	SRR771496	SINGLE	shoot	3 weeks	Shoot Cultivar Nipponbare RSF	Nipponbare	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE44898	GSM1093499	SRR771495	SINGLE	root	3 weeks	Root Cultivar Nipponbare RRG	Nipponbare	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE44898	GSM1093498	SRR771494	SINGLE	root	3 weeks	Root Cultivar Nipponbare RRF	Nipponbare	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Illumina Genome Analyzer Iix
GSE113554	GSM3109035	SRR7058098	SINGLE	leaf	treatment time: 20d	rice_RSV	Nipponbare	Rice stripe virus-derived siRNAs play different regulatory roles in host plant and vector insect [sRNA-Seq]	Illumina HiSeq 4000
GSE113554	GSM3109034	SRR7058097	SINGLE	leaf	treatment time: 20d	rice_mock	Nipponbare	Rice stripe virus-derived siRNAs play different regulatory roles in host plant and vector insect [sRNA-Seq]	Illumina HiSeq 4000
GSE113554	GSM3109033	SRR7058096	SINGLE	leaf	treatment time: 20d	rice_mock	Nipponbare	Rice stripe virus-derived siRNAs play different regulatory roles in host plant and vector insect [sRNA-Seq]	Illumina HiSeq 4000
GSE111440	GSM3030851	SRR6810106	SINGLE	panicle	Four weeks old seedlings	panicle	PB-1	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [ncRNA-seq]	Illumina NextSeq 500
GSE111440	GSM3030850	SRR6810105	SINGLE	panicle	Four weeks old seedlings	panicle	PB-1	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [ncRNA-seq]	Illumina NextSeq 500
GSE111440	GSM3030849	SRR6810104	SINGLE	flag_leaf	Four weeks old seedlings	flag_leaf	PB-1	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [ncRNA-seq]	Illumina NextSeq 500
GSE111440	GSM3030848	SRR6810103	SINGLE	flag_leaf	Four weeks old seedlings	flag_leaf	PB-1	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [ncRNA-seq]	Illumina NextSeq 500
GSE111440	GSM3030847	SRR6810102	SINGLE	seedling	Four weeks old seedlings	seedling	PB-1	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [ncRNA-seq]	Illumina NextSeq 500
GSE111440	GSM3030846	SRR6810101	SINGLE	seedling	Four weeks old seedlings	seedling	PB-1	Rice domestication-associated miRNA 397 targets laccases to facilitate lignin biosynthesis and yield-related traits [ncRNA-seq]	Illumina NextSeq 500
GSE109299	GSM2936724	SRR6498702	SINGLE	leaf	3 weeks old	"WT, M. oryzae Infected"	none	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice [ncRNA-seq]	Illumina HiSeq 2500
GSE109299	GSM2936723	SRR6498701	SINGLE	leaf	3 weeks old	"WT, Control"	none	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice [ncRNA-seq]	Illumina HiSeq 2500
GSE109299	GSM2936722	SRR6498700	SINGLE	leaf	3 weeks old	"WT, M. oryzae Infected"	none	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice [ncRNA-seq]	Illumina HiSeq 2500
GSE109299	GSM2936721	SRR6498699	SINGLE	leaf	3 weeks old	"WT, Control"	none	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice [ncRNA-seq]	Illumina HiSeq 2500
GSE109299	GSM2936720	SRR6498698	SINGLE	leaf	3 weeks old	"DCL1a mutant, M. oryzae Infected"	none	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice [ncRNA-seq]	Illumina HiSeq 2500
GSE107904	GSM2883141	SRR6365694	SINGLE	panicle	mature panicle	Wild type	PB-1	Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)	Illumina NextSeq 500
GSE107904	GSM2883140	SRR6365693	SINGLE	panicle	mature panicle	Wild type	PB-1	Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)	Illumina NextSeq 500
GSE107904	GSM2883139	SRR6365692	SINGLE	panicle	young panicle	Wild type	PB-1	Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)	Illumina NextSeq 500
GSE107904	GSM2883138	SRR6365691	SINGLE	panicle	young panicle	Wild type	PB-1	Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)	Illumina NextSeq 500
GSE107904	GSM2883137	SRR6365690	SINGLE	seedling	Four weeks old seedlings	Wild type	PB-1	Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)	Illumina NextSeq 500
GSE107904	GSM2883136	SRR6365689	SINGLE	seedling	Four weeks old seedlings	Wild type	PB-1	Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)	Illumina NextSeq 500
GSE102747	GSM2745993	SRR5940086	SINGLE	panicle	young panicles before heading date	Wild type	none	Down-regulated expression of OsDCL3b affects small RNA biogenesis and panicle development in rice	Illumina HiSeq 2500
GSE102572	GSM2741330	SRR5929446	SINGLE	leaf	none	"O sativa, IL, adapters: standard"	none	Comparison of sRNA populations obtained using HD or standard Illumina adapters in O sativa	Illumina HiSeq 2500
GSE102572	GSM2741329	SRR5929445	SINGLE	leaf	none	"O sativa, IL, adapters: standard"	none	Comparison of sRNA populations obtained using HD or standard Illumina adapters in O sativa	Illumina HiSeq 2500
GSE92549	GSM2432160	SRR5120084	SINGLE	leaf_sheath	3-week-old	P15_48	BPH15 introgression line	Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants	Illumina HiSeq 2000
GSE92549	GSM2432159	SRR5120083	SINGLE	leaf_sheath	3-week-old	P15_6	BPH15 introgression line	Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants	Illumina HiSeq 2000
GSE92549	GSM2432158	SRR5120082	SINGLE	leaf_sheath	3-week-old	P15_0	BPH15 introgression line	Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants	Illumina HiSeq 2000
GSE92549	GSM2432157	SRR5120081	SINGLE	leaf_sheath	3-week-old	PC_48	9311	Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants	Illumina HiSeq 2000
GSE92549	GSM2432156	SRR5120080	SINGLE	leaf_sheath	3-week-old	PC_6	9311	Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants	Illumina HiSeq 2000
GSE92549	GSM2432155	SRR5120079	SINGLE	leaf_sheath	3-week-old	PC_0	9311	Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants	Illumina HiSeq 2000
GSE90479	GSM2402653	SRR5049793	SINGLE	ovary	bi-cellular pollen stage (BCP)	floret length/mm: >7.0	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402652	SRR5049792	SINGLE	ovary	single microspore stage (SCP)	floret length/mm: 6.0-6.5	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402651	SRR5049791	SINGLE	ovary	meiosis (MA)	floret length/mm: 4.3-4.5	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402650	SRR5049790	SINGLE	ovary	pre-meiotic interphase (PMA)	floret length/mm: 3.1-3.3	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402649	SRR5049789	SINGLE	ovary	bi-cellular pollen stage (BCP)	floret length/mm: >6.5	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402648	SRR5049788	SINGLE	ovary	single microspore stage (SCP)	floret length/mm: 5.0-5.5	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402647	SRR5049787	SINGLE	ovary	meiosis (MA)	floret length/mm: 3.8-4.0	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402646	SRR5049786	SINGLE	ovary	pre-meiotic interphase (PMA)	floret length/mm: 2.6-2.8	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402645	SRR5049785	SINGLE	anther	bi-cellular pollen stage (BCP)	floret length/mm: >7.0	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402644	SRR5049784	SINGLE	anther	single microspore stage (SCP)	floret length/mm: 6.0-6.5	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402643	SRR5049783	SINGLE	anther	meiosis (MA)	floret length/mm: 4.3-4.5	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402642	SRR5049782	SINGLE	anther	pre-meiotic interphase (PMA)	floret length/mm: 3.1-3.3	autotetraploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402641	SRR5049781	SINGLE	anther	bi-cellular pollen stage (BCP)	floret length/mm: >6.5	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402640	SRR5049780	SINGLE	anther	single microspore stage (SCP)	floret length/mm: 5.0-5.5	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402639	SRR5049779	SINGLE	anther	meiosis (MA)	floret length/mm: 3.8-4.0	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE90479	GSM2402638	SRR5049778	SINGLE	anther	pre-meiotic interphase (PMA)	floret length/mm: 2.6-2.8	diploid rice	Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice	Illumina HiSeq 2500
GSE38480	GSM943196	SRR504363	SINGLE	leaf	none	93-11 X NPB	93-11 X NPB	Transcriptome and methylome interactions in rice hybrids	Illumina Genome Analyzer II
GSE38480	GSM943195	SRR504362	SINGLE	leaf	none	NPB X 93-11	NPB X 93-11	Transcriptome and methylome interactions in rice hybrids	Illumina Genome Analyzer II
GSE38480	GSM943194	SRR504361	SINGLE	leaf	none	Nov-93	Nov-93	Transcriptome and methylome interactions in rice hybrids	Illumina Genome Analyzer II
GSE38480	GSM943193	SRR504360	SINGLE	leaf	none	Nipponbare	Nipponbare	Transcriptome and methylome interactions in rice hybrids	Illumina Genome Analyzer II
GSE36696	GSM898993	SRR447136	SINGLE	shoot	14-day-old	As(III) 80 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898992	SRR447135	SINGLE	shoot	14-day-old	As(III) 20 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898991	SRR447134	SINGLE	shoot	14-day-old	As(III) 80 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898990	SRR447133	SINGLE	shoot	14-day-old	As(III) 20 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898989	SRR447132	SINGLE	shoot	14-day-old	control for As(III) 20/80 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898988	SRR447131	SINGLE	root	14-day-old	As(III) 80 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898987	SRR447130	SINGLE	root	14-day-old	As(III) 20 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898986	SRR447129	SINGLE	root	14-day-old	As(III) 80 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898985	SRR447128	SINGLE	root	14-day-old	As(III) 20 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36696	GSM898984	SRR447127	SINGLE	root	14-day-old	control for As(III) 20/80 uM	Nipponbare	"Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)"	Illumina Genome Analyzer Iix
GSE36205	GSM883694	SRR426799	SINGLE	leaf	trefoil stage	mock-treated susceptible rice line	Zhonger-Ruanzhan	Identification of Magnaporthe oryzae elicited small RNAs and expression profiles in resistant and susceptible rice cultivars	Illumina Genome Analyzer
GSE86215	GSM2298221	SRR4098209	SINGLE	leaf	2 weeks	No treatment	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298220	SRR4098208	SINGLE	root	2 weeks	No treatment	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298219	SRR4098207	SINGLE	panicle	2 weeks	No treatment	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298218	SRR4098206	SINGLE	seedling	2 weeks	Highlight (50000 Lux)	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298217	SRR4098205	SINGLE	seedling	2 weeks	Heat (50C)	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298216	SRR4098204	SINGLE	seedling	2 weeks	Drought (air-dried)	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298214	SRR4098203	SINGLE	seedling	2 weeks	No treatment	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298213	SRR4098202	SINGLE	seedling	2 weeks	High-salt (300 mM NaCl)	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE86215	GSM2298215	SRR4098172	SINGLE	seedling	2 weeks	Cold (4C)	japanica	Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels	Illumina HiSeq 2000
GSE84885	GSM2253129	SRR3955360	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, short-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253128	SRR3955359	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, short-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253127	SRR3955358	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, short-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253126	SRR3955357	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, short-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253125	SRR3955356	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, short-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253124	SRR3955355	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, short-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253123	SRR3955354	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, long-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253122	SRR3955353	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, long-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253121	SRR3955352	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, long-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253120	SRR3955351	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, long-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253119	SRR3955350	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, long-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253118	SRR3955349	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, long-day growth conditions"	NIL(MH)	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253117	SRR3955348	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, short-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253116	SRR3955347	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, short-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253115	SRR3955346	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, short-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253114	SRR3955345	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, short-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253113	SRR3955344	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, short-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253112	SRR3955343	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, short-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253111	SRR3955342	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, long-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253110	SRR3955341	SINGLE	panicle	young panicles	"3.0-4.0 mm florets, long-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253109	SRR3955340	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, long-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253108	SRR3955339	SINGLE	panicle	young panicles	"1.0-2.0 cm panicles, long-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253107	SRR3955338	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, long-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE84885	GSM2253106	SRR3955337	SINGLE	panicle	young panicles	"0.5-1.0 cm panicles, long-day growth conditions"	Nongken 58S	Small RNA and PARE sequencing in rice (photoperiod sensitive male sterility lines and wild type) panicles under long-day and short-day conditions	Illumina HiSeq 2000
GSE79344	GSM2092608	SRR3234045	SINGLE	pollen	single microspore stage (SCP)	floret length/mm: 5.50-6.00	autotetraploid rice	Comparative small RNA analysis of pollen development in autotetraploid and diploid rice	Illumina HiSeq 2500
GSE79344	GSM2092607	SRR3234044	SINGLE	pollen	meiosis (MA)	floret length/mm: 3.80-4.30	autotetraploid rice	Comparative small RNA analysis of pollen development in autotetraploid and diploid rice	Illumina HiSeq 2500
GSE79344	GSM2092606	SRR3234043	SINGLE	pollen	pre-meiotic interphase (PMA)	floret length/mm: 2.50-3.00	autotetraploid rice	Comparative small RNA analysis of pollen development in autotetraploid and diploid rice	Illumina HiSeq 2500
GSE79344	GSM2092605	SRR3234042	SINGLE	pollen	single microspore stage (SCP)	floret length/mm: 5.50-6.00	diploid rice	Comparative small RNA analysis of pollen development in autotetraploid and diploid rice	Illumina HiSeq 2500
GSE79344	GSM2092604	SRR3234041	SINGLE	pollen	meiosis (MA)	floret length/mm: 3.80-4.30	diploid rice	Comparative small RNA analysis of pollen development in autotetraploid and diploid rice	Illumina HiSeq 2500
GSE79344	GSM2092603	SRR3234040	SINGLE	pollen	pre-meiotic interphase (PMA)	floret length/mm: 2.50-3.00	diploid rice	Comparative small RNA analysis of pollen development in autotetraploid and diploid rice	Illumina HiSeq 2500
GSE78900	GSM2080684	SRR3203907	SINGLE	leaf	two-weeks	WT	none	A Domestication-Selected Retrotransposon for Quenching Genomic Immunity in Rice [small RNA-Seq]	Illumina HiSeq 2000
GSE77510	GSM2053500	SRR3140957	SINGLE	leaf	three-leaf seedling	"45C, 24h"	HT54	Identification of heat stress-responsive rice microRNAs and their target genes by high-throughput sequencing and degradome analysis	Illumina Genome Analyzer II
GSE77510	GSM2053499	SRR3140956	SINGLE	leaf	three-leaf seedling	"45C, 24h"	HT54	Identification of heat stress-responsive rice microRNAs and their target genes by high-throughput sequencing and degradome analysis	Illumina Genome Analyzer II
GSE77510	GSM2053498	SRR3140955	SINGLE	leaf	three-leaf seedling	"45C, 12h"	HT54	Identification of heat stress-responsive rice microRNAs and their target genes by high-throughput sequencing and degradome analysis	Illumina Genome Analyzer II
GSE77510	GSM2053497	SRR3140954	SINGLE	leaf	three-leaf seedling	"45C, 12h"	HT54	Identification of heat stress-responsive rice microRNAs and their target genes by high-throughput sequencing and degradome analysis	Illumina Genome Analyzer II
GSE77510	GSM2053496	SRR3140953	SINGLE	leaf	three-leaf seedling	"45C, 0h"	HT54	Identification of heat stress-responsive rice microRNAs and their target genes by high-throughput sequencing and degradome analysis	Illumina Genome Analyzer II
GSE77510	GSM2053495	SRR3140952	SINGLE	leaf	three-leaf seedling	"45C, 0h"	HT54	Identification of heat stress-responsive rice microRNAs and their target genes by high-throughput sequencing and degradome analysis	Illumina Genome Analyzer II
GSE77332	GSM2049386	SRR3130374	SINGLE	leaf	fully expanded third leaf	48 hpi;M.oryzae	C101LAC	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049385	SRR3130373	SINGLE	leaf	fully expanded third leaf	48 hpi;M.oryzae	Co39	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049384	SRR3130372	SINGLE	leaf	fully expanded third leaf	24 hpi;M.oryzae	C101LAC	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049383	SRR3130371	SINGLE	leaf	fully expanded third leaf	24 hpi;M.oryzae	Co39	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049382	SRR3130370	SINGLE	leaf	fully expanded third leaf	control 8 hour	C101LAC	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049381	SRR3130369	SINGLE	leaf	fully expanded third leaf	control 8 hour	Co39	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049380	SRR3130368	SINGLE	leaf	fully expanded third leaf	8 hpi;M.oryzae	C101LAC	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049379	SRR3130367	SINGLE	leaf	fully expanded third leaf	8 hpi;M.oryzae	Co39	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049378	SRR3130366	SINGLE	leaf	fully expanded third leaf	control 0 hour	C101LAC	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77332	GSM2049377	SRR3130365	SINGLE	leaf	fully expanded third leaf	control 0 hour	Co39	Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq]	Illumina HiSeq 2000
GSE77046	GSM2043047	SRR3110557	SINGLE	shoot	none	shoot treated	Nipponbare	Small RNA analysis of ASR5 knockdown rice plants (ssp. Japonica cv. Nipponbare) under Al stress conditions	Illumina HiSeq 2000
GSE77046	GSM2043046	SRR3110556	SINGLE	shoot	none	shoot control	Nipponbare	Small RNA analysis of ASR5 knockdown rice plants (ssp. Japonica cv. Nipponbare) under Al stress conditions	Illumina HiSeq 2000
GSE74498	GSM1921846	SRR2862368	SINGLE	leaf	three-leaf stage	viruliferous Infected leaf cells	cv. Wuyujing 3	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)	Illumina HiSeq 2000
GSE74498	GSM1921845	SRR2862367	SINGLE	leaf	three-leaf stage	viruliferous Infected leaf cells	cv. Wuyujing 3	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)	Illumina HiSeq 2000
GSE74498	GSM1921844	SRR2862366	SINGLE	leaf	three-leaf stage	viruliferous Infected leaf cells	cv. Wuyujing 3	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)	Illumina HiSeq 2000
GSE74498	GSM1921843	SRR2862365	SINGLE	leaf	three-leaf stage	mock leaf cells	cv. Wuyujing 3	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)	Illumina HiSeq 2000
GSE74498	GSM1921842	SRR2862364	SINGLE	leaf	three-leaf stage	mock leaf cells	cv. Wuyujing 3	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)	Illumina HiSeq 2000
GSE74498	GSM1921841	SRR2862363	SINGLE	leaf	three-leaf stage	mock leaf cells	cv. Wuyujing 3	Integrative analysis of microRNAome and transcriptome elucidates the response of susceptible rice plants to rice stripe virus RSV (miRNA-Seq)	Illumina HiSeq 2000
GSE74003	GSM1907995	SRR2646855	SINGLE	panicle	pollen mother cell meiophase	SP	WXS(S)	Small RNA profiles of the rice non-pollen male sterile line Wuxiang S reveal miRNAs involved in the fertility transition	Illumina HiSeq 2500
GSE74003	GSM1907994	SRR2646854	SINGLE	panicle	pollen mother cell formation stage	SP	WXS(S)	Small RNA profiles of the rice non-pollen male sterile line Wuxiang S reveal miRNAs involved in the fertility transition	Illumina HiSeq 2500
GSE74003	GSM1907993	SRR2646853	SINGLE	panicle	pollen mother cell meiophase	FP	WXS(F)	Small RNA profiles of the rice non-pollen male sterile line Wuxiang S reveal miRNAs involved in the fertility transition	Illumina HiSeq 2500
GSE74003	GSM1907992	SRR2646852	SINGLE	panicle	pollen mother cell formation stage	FP	WXS(F)	Small RNA profiles of the rice non-pollen male sterile line Wuxiang S reveal miRNAs involved in the fertility transition	Illumina HiSeq 2500
GSE73657	GSM1900092	SRR2544788	SINGLE	embryo	24 hours imbibition	24 hours imbibition	Nipponbare	MiRNA analysis of rice seed germination	Illumina Genome Analyzer
GSE73657	GSM1900091	SRR2544787	SINGLE	embryo	12 hours imbibition	12 hours imbibition	Nipponbare	MiRNA analysis of rice seed germination	Illumina Genome Analyzer
GSE73657	GSM1900090	SRR2544786	SINGLE	embryo	dry seed	dry seed	Nipponbare	MiRNA analysis of rice seed germination	Illumina Genome Analyzer
GSE71925	GSM1847454	SRR2154081	SINGLE	seedling	1 week	Taipei309_seedling	Taipei309	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847453	SRR2154080	SINGLE	seedling	1 week	Nipponbare_seedling	Nipponbare	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847452	SRR2154079	SINGLE	seedling	1 week	Heukgyeong_seedling	Heukgyeong	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847451	SRR2154078	SINGLE	seedling	1 week	Rathuwee_seedling	Rathuwee	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847450	SRR2154077	SINGLE	seedling	1 week	KDM105_seedling	KDM105	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847449	SRR2154076	SINGLE	seedling	1 week	Guangluai4_seedling	Guangluai4	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847448	SRR2154075	SINGLE	seed	1 week	Taipei309_seed	Taipei309	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847447	SRR2154074	SINGLE	seed	1 week	Nipponbare_seed	Nipponbare	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847446	SRR2154073	SINGLE	seed	1 week	Heukgyeong_seed	Heukgyeong	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847445	SRR2154072	SINGLE	seed	1 week	Rathuwee_seed	Rathuwee	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847444	SRR2154071	SINGLE	seed	1 week	KDM105_seed	KDM105	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE71925	GSM1847443	SRR2154070	SINGLE	seed	1 week	Guangluai4_seed	Guangluai4	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina HiSeq 2000
GSE66609	GSM1626138	SRR1849784	SINGLE	root	15 days old	Control 120min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626130	SRR1849776	SINGLE	leaf	15 days old	Margaporthe oryzae 120min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626129	SRR1849775	SINGLE	leaf	15 days old	Margaporthe oryzae 120min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626128	SRR1849774	SINGLE	leaf	15 days old	Margaporthe oryzae 120min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626127	SRR1849773	SINGLE	leaf	15 days old	Control 120min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626126	SRR1849772	SINGLE	leaf	15 days old	Control 120min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626125	SRR1849771	SINGLE	leaf	15 days old	Control 120min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626124	SRR1849770	SINGLE	leaf	15 days old	Margaporthe oryzae 30min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626123	SRR1849769	SINGLE	leaf	15 days old	Margaporthe oryzae 30min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626122	SRR1849768	SINGLE	leaf	15 days old	Margaporthe oryzae 30min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626121	SRR1849767	SINGLE	leaf	15 days old	Control 30min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE66609	GSM1626119	SRR1849765	SINGLE	leaf	15 days old	Control 30min	Nipponbare	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal Margaporthe oryzaes [miRNA-Seq]	Illumina HiSeq 2000
GSE65149	GSM1588208	SRR1742996	SINGLE	endosperm	6 day after pollination	4X2_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588208	SRR1742995	SINGLE	endosperm	6 day after pollination	4X2_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588208	SRR1742994	SINGLE	endosperm	6 day after pollination	4X2_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588207	SRR1742993	SINGLE	endosperm	6 day after pollination	2X4_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588207	SRR1742992	SINGLE	endosperm	6 day after pollination	2X4_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588207	SRR1742991	SINGLE	endosperm	6 day after pollination	2X4_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588206	SRR1742990	SINGLE	endosperm	6 day after pollination	4X_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588206	SRR1742989	SINGLE	endosperm	6 day after pollination	4X_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE65149	GSM1588206	SRR1742988	SINGLE	endosperm	6 day after pollination	4X_En_sRNA	none	"Rice interploidy crosses disrupt epigenetic regulation, gene expression, and seed development"	Illumina HiSeq 2000
GSE64651	GSM1576238	SRR1740025	SINGLE	seedling	seedlings	PK-Control	Pokkali	Small RNAs in stress-related rice cultivars	Illumina HiSeq 2000
GSE64651	GSM1576237	SRR1740024	SINGLE	seedling	seedlings	N22-Control	Nagina 22	Small RNAs in stress-related rice cultivars	Illumina HiSeq 2000
GSE64651	GSM1576236	SRR1740023	SINGLE	seedling	seedlings	IR64-Control	IR64	Small RNAs in stress-related rice cultivars	Illumina HiSeq 2000
GSE63367	GSM1547539	SRR1654490	SINGLE	leaf	none	wild type	Nipponbare	Expression profiling of small RNAs in wild type and Osaba1-1 rice seedlings	Illumina HiSeq 2000
GSE62334	GSM1525455	SRR1612403	SINGLE	leaf	four-leaf stage	WT wild type (miRNA)	Nipponbare	Genome-wide identification of microRNAs and their targets involved in the phyB-mediated light signaling pathway in rice	Illumina HiSeq 2500
GSE155931	GSM4716064	SRR12416749	SINGLE	blade	developmental stage: S5	sRNA_Blade_S5	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716063	SRR12416748	SINGLE	blade	developmental stage: S5	sRNA_Blade_S5	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716062	SRR12416747	SINGLE	blade	developmental stage: S4	sRNA_Blade_S4	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716061	SRR12416746	SINGLE	blade	developmental stage: S4	sRNA_Blade_S4	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716060	SRR12416745	SINGLE	blade	developmental stage: S3	sRNA_Blade_S3	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716059	SRR12416744	SINGLE	blade	developmental stage: S3	sRNA_Blade_S3	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716058	SRR12416743	SINGLE	blade	developmental stage: S2	sRNA_Blade_S2	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716057	SRR12416742	SINGLE	blade	developmental stage: S2	sRNA_Blade_S2	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716056	SRR12416741	SINGLE	blade	developmental stage: S1	sRNA_Blade_S1	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716055	SRR12416740	SINGLE	blade	developmental stage: S1	sRNA_Blade_S1	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716054	SRR12416739	SINGLE	lamina_joint	developmental stage: S5	sRNA_LJ_S5	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716053	SRR12416738	SINGLE	lamina_joint	developmental stage: S5	sRNA_LJ_S5	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716052	SRR12416737	SINGLE	lamina_joint	developmental stage: S4	sRNA_LJ_S4	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716051	SRR12416736	SINGLE	lamina_joint	developmental stage: S4	sRNA_LJ_S4	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716050	SRR12416735	SINGLE	lamina_joint	developmental stage: S3	sRNA_LJ_S3	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716049	SRR12416734	SINGLE	lamina_joint	developmental stage: S3	sRNA_LJ_S3	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716048	SRR12416733	SINGLE	lamina_joint	developmental stage: S2	sRNA_LJ_S2	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716047	SRR12416732	SINGLE	lamina_joint	developmental stage: S2	sRNA_LJ_S2	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716046	SRR12416731	SINGLE	lamina_joint	developmental stage: S1	sRNA_LJ_S1	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE155931	GSM4716045	SRR12416730	SINGLE	lamina_joint	developmental stage: S1	sRNA_LJ_S1	none	Spatiotemporal resolved leaf angle establishment improves rice grain yield via controlling population density [miRNA-seq]	BGISEQ-500
GSE144110	GSM4280423	SRR10956502	SINGLE	panicle	mature panicle	WT	PB1	Role of rice AGO17 in rice development	Illumina HiSeq 2500
GSE144110	GSM4280422	SRR10956501	SINGLE	panicle	mature panicle	WT	PB1	Role of rice AGO17 in rice development	Illumina HiSeq 2500
GSE142110	GSM4221060	SRR10704060	SINGLE	leaf	third-leaf stage	Glyphosate	glyphosate-tolerant variety	"Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing [miRNA-Seq]"	Illumina HiSeq 2500
GSE142110	GSM4221059	SRR10704059	SINGLE	leaf	third-leaf stage	Glyphosate	glyphosate-tolerant variety	"Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing [miRNA-Seq]"	Illumina HiSeq 2500
GSE142110	GSM4221058	SRR10704058	SINGLE	leaf	third-leaf stage	Glyphosate	glyphosate-tolerant variety	"Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing [miRNA-Seq]"	Illumina HiSeq 2500
GSE142110	GSM4221057	SRR10704057	SINGLE	leaf	third-leaf stage	CK	glyphosate-tolerant variety	"Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing [miRNA-Seq]"	Illumina HiSeq 2500
GSE142110	GSM4221056	SRR10704056	SINGLE	leaf	third-leaf stage	CK	glyphosate-tolerant variety	"Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing [miRNA-Seq]"	Illumina HiSeq 2500
GSE142110	GSM4221055	SRR10704055	SINGLE	leaf	third-leaf stage	CK	glyphosate-tolerant variety	"Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing [miRNA-Seq]"	Illumina HiSeq 2500
GSE141995	GSM4217492	SRR10690159	SINGLE	leaf	at the tillering stage	IRBB5_Xanthomonas oryzae pv. oryzae_24h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217491	SRR10690158	SINGLE	leaf	at the tillering stage	IRBB5_Xanthomonas oryzae pv. oryzae_24h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217490	SRR10690157	SINGLE	leaf	at the tillering stage	IRBB5_Xanthomonas oryzae pv. oryzae_24h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217489	SRR10690156	SINGLE	leaf	at the tillering stage	IRBB5_Xanthomonas oryzae pv. oryzae_8h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217488	SRR10690155	SINGLE	leaf	at the tillering stage	IRBB5_Xanthomonas oryzae pv. oryzae_8h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217487	SRR10690154	SINGLE	leaf	at the tillering stage	IRBB5_Xanthomonas oryzae pv. oryzae_8h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217486	SRR10690153	SINGLE	leaf	at the tillering stage	IRBB5_0h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217485	SRR10690152	SINGLE	leaf	at the tillering stage	IRBB5_0h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217484	SRR10690151	SINGLE	leaf	at the tillering stage	IRBB5_0h	IRBB5	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217483	SRR10690150	SINGLE	leaf	at the tillering stage	IR24_Xanthomonas oryzae pv. oryzae_24h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217482	SRR10690149	SINGLE	leaf	at the tillering stage	IR24_Xanthomonas oryzae pv. oryzae_24h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217481	SRR10690148	SINGLE	leaf	at the tillering stage	IR24_Xanthomonas oryzae pv. oryzae_24h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217480	SRR10690147	SINGLE	leaf	at the tillering stage	IR24_Xanthomonas oryzae pv. oryzae_8h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217479	SRR10690146	SINGLE	leaf	at the tillering stage	IR24_Xanthomonas oryzae pv. oryzae_8h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217478	SRR10690145	SINGLE	leaf	at the tillering stage	IR24_Xanthomonas oryzae pv. oryzae_8h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217477	SRR10690144	SINGLE	leaf	at the tillering stage	IR24_0h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217476	SRR10690143	SINGLE	leaf	at the tillering stage	IR24_0h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE141995	GSM4217475	SRR10690142	SINGLE	leaf	at the tillering stage	IR24_0h	IR24	Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 2]	BGISEQ-500
GSE53252	GSM1288579	SRR1061625	SINGLE	panicle	none	Heat Stress	Nagina-22	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288578	SRR1061624	SINGLE	panicle	none	Normal	Nagina-22	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288577	SRR1061623	SINGLE	flag_leaf	none	Heat Stress	BPT-5206	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288576	SRR1061622	SINGLE	flag_leaf	none	Normal	BPT-5206	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288575	SRR1061621	SINGLE	flag_leaf	none	Heat Stress	Lalat	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288574	SRR1061620	SINGLE	flag_leaf	none	Normal	Lalat	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288573	SRR1061619	SINGLE	flag_leaf	none	Heat Stress	Nagina-22	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288572	SRR1061618	SINGLE	flag_leaf	none	Normal	Nagina-22	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288571	SRR1061617	SINGLE	panicle	none	Heat Stress	BPT-5206	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288570	SRR1061616	SINGLE	panicle	none	Normal	BPT-5206	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288569	SRR1061615	SINGLE	panicle	none	Heat Stress	Lalat	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288568	SRR1061614	SINGLE	panicle	none	Normal	Lalat	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288567	SRR1061613	SINGLE	panicle	none	Heat Stress	Shatabdi	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE53252	GSM1288566	SRR1061612	SINGLE	panicle	none	Normal	Shatabdi	3 and 5 end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Oryza sativa]	Illumina Genome Analyzer II
GSE51468	GSM1246113	SRR1013789	SINGLE	panicle	Grain-filling stage	93-11_PA	Nov-93	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice	Illumina Genome Analyzer II
GSE51468	GSM1246112	SRR1013788	SINGLE	panicle	Grain-filling stage	LYP9_PA	LYP9	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice	Illumina Genome Analyzer II
GSE51468	GSM1246111	SRR1013787	SINGLE	panicle	Grain-filling stage	PA64s_PA	PA64s	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice	Illumina Genome Analyzer II
GSE51468	GSM1246110	SRR1013786	SINGLE	flag_leaf	Grain-filling stage	93-11_FL	Nov-93	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice	Illumina Genome Analyzer II
GSE51468	GSM1246109	SRR1013785	SINGLE	flag_leaf	Grain-filling stage	LYP9_FL	LYP9	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice	Illumina Genome Analyzer II
GSE51468	GSM1246108	SRR1013784	SINGLE	flag_leaf	Grain-filling stage	PA64s_FL	PA64s	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice	Illumina Genome Analyzer II
GSE26405	GSM648141	SRR089774	SINGLE	panicle	young panicles (4cm)	wild-type	zhonghua11	Roles of RDR701 and DCLs in Rice PhasiRNA biogenesis	Illumina Genome Analyzer
GSE26405	GSM648139	SRR089772	SINGLE	panicle	young panicles (4cm)	wild-type	zhonghua11	Roles of RDR701 and DCLs in Rice PhasiRNA biogenesis	Illumina Genome Analyzer
GSE26357	GSM647195	SRR089622	SINGLE	panicle	Three-month-old	salt	Japonica	Genome-wide profiling of small RNAs in rice under abiotic stresses	Illumina Genome Analyzer
GSE26357	GSM647194	SRR089621	SINGLE	panicle	Three-month-old	cold	Japonica	Genome-wide profiling of small RNAs in rice under abiotic stresses	Illumina Genome Analyzer
GSE26357	GSM647193	SRR089620	SINGLE	panicle	Three-month-old	drought	Japonica	Genome-wide profiling of small RNAs in rice under abiotic stresses	Illumina Genome Analyzer
GSE26357	GSM647192	SRR089619	SINGLE	panicle	Three-month-old	control	Japonica	Genome-wide profiling of small RNAs in rice under abiotic stresses	Illumina Genome Analyzer