GEO_accession	GEO_ID	sample_ID	data_type	tissue	age	stimulus	genotype	title	sequencer
GSE89233	GSM2362470	SRR4457249	paired-end	2nd_leaf	after_heading	DAH4	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362471	SRR4457250	paired-end	2nd_leaf	after_heading	DAH4	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362472	SRR4457251	paired-end	2nd_leaf	after_heading	DAH4	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362473	SRR4457252	paired-end	2nd_leaf	after_heading	DAH12	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362474	SRR4457253	paired-end	2nd_leaf	after_heading	DAH12	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362475	SRR4457254	paired-end	2nd_leaf	after_heading	DAH12	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362476	SRR4457255	paired-end	2nd_leaf	after_heading	DAH20	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362477	SRR4457256	paired-end	2nd_leaf	after_heading	DAH20	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362478	SRR4457257	paired-end	2nd_leaf	after_heading	DAH20	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362479	SRR4457258	paired-end	2nd_leaf	after_heading	DAH28	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362480	SRR4457259	paired-end	2nd_leaf	after_heading	DAH28	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362481	SRR4457260	paired-end	2nd_leaf	after_heading	DAH28	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362482	SRR4457261	paired-end	2nd_leaf	after_heading	DAH36	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362483	SRR4457262	paired-end	2nd_leaf	after_heading	DAH36	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362484	SRR4457263	paired-end	2nd_leaf	after_heading	DAH36	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362485	SRR4457264	paired-end	2nd_leaf	after_heading	DAH44	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362486	SRR4457265	paired-end	2nd_leaf	after_heading	DAH44	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362487	SRR4457266	paired-end	2nd_leaf	after_heading	DAH44	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE84077	GSM2226844	SRR3745125	single-end	anther	anthesis_stage	wt	no_collect	Genome-wide identification of genes involved in phytochrome (phy)-mediated anther development in rice	Illumina HiSeq 2500
GSE84077	GSM2226845	SRR3745126	single-end	anther	anthesis_stage	wt	no_collect	Genome-wide identification of genes involved in phytochrome (phy)-mediated anther development in rice	Illumina HiSeq 2500
GSE84077	GSM2226846	SRR3745127	single-end	anther	anthesis_stage	wt	no_collect	Genome-wide identification of genes involved in phytochrome (phy)-mediated anther development in rice	Illumina HiSeq 2500
GSE33265	GSM823083	SRR358795	single-end	callus	3_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE33265	GSM823083	SRR358796	single-end	callus	3_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE33265	GSM823084	SRR358797	single-end	callus	3_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE33265	GSM823084	SRR358798	single-end	callus	3_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE116581	GSM3243307	SRR6320473	paired-end	carpel	no_collect	wt	Fengsizhan	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	HiSeq X Ten
GSE116581	GSM3243308	SRR6320498	paired-end	carpel	no_collect	wt	Fengsizhan	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	HiSeq X Ten
GSE98924	GSM2627922	SRR5560727	paired-end	caryopsis	post_flowering_day_9	wild_type	Nipponbare	The novel quantitative trait locus qTGW3 encodes a GSK3-like kinase and negatively regulates grain size and weight in rice	Illumina HiSeq 2000
GSE98924	GSM2627923	SRR5560728	paired-end	caryopsis	post_flowering_day_9	wild_type	Nipponbare	The novel quantitative trait locus qTGW3 encodes a GSK3-like kinase and negatively regulates grain size and weight in rice	Illumina HiSeq 2000
GSE98924	GSM2627924	SRR5560729	paired-end	caryopsis	post_flowering_day_9	wild_type	Nipponbare	The novel quantitative trait locus qTGW3 encodes a GSK3-like kinase and negatively regulates grain size and weight in rice	Illumina HiSeq 2000
GSE76051	GSM1973418	SRR3015587	paired-end	coleoptile	2_days_old	wild_type_plus_1hr_shade	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE76051	GSM1973419	SRR3015588	paired-end	coleoptile	2_days_old	wild_type_plus_1hr_shade	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE76051	GSM1973420	SRR3015589	paired-end	coleoptile	2_days_old	wild_type_plus_1hr_white_light	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE76051	GSM1973421	SRR3015591	paired-end	coleoptile	2_days_old	wild_type_plus_1hr_white_light	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE115371	GSM3176788	SRR7265400	single-end	coleoptile	no_collect	2dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176789	SRR7265401	single-end	coleoptile	no_collect	2dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176790	SRR7265402	single-end	coleoptile	no_collect	2dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176791	SRR7265403	single-end	coleoptile	no_collect	2dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176792	SRR7265404	single-end	coleoptile	no_collect	2dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176793	SRR7265405	single-end	coleoptile	no_collect	2dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176794	SRR7265406	single-end	coleoptile	no_collect	3dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176795	SRR7265407	single-end	coleoptile	no_collect	3dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176796	SRR7265408	single-end	coleoptile	no_collect	3dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176797	SRR7265409	single-end	coleoptile	no_collect	3dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176798	SRR7265410	single-end	coleoptile	no_collect	3dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176799	SRR7265411	single-end	coleoptile	no_collect	3dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176800	SRR7265412	single-end	coleoptile	no_collect	4dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176801	SRR7265413	single-end	coleoptile	no_collect	4dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176802	SRR7265414	single-end	coleoptile	no_collect	4dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176803	SRR7265415	single-end	coleoptile	no_collect	4dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176804	SRR7265416	single-end	coleoptile	no_collect	4dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176805	SRR7265417	single-end	coleoptile	no_collect	4dN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176806	SRR7265418	single-end	coleoptile	no_collect	3dN1dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176807	SRR7265419	single-end	coleoptile	no_collect	3dN1dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176808	SRR7265420	single-end	coleoptile	no_collect	3dN1dA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE86272	GSM2299260	SRR4104639	paired-end	crown	no_collect	"Zn_deficiency,8_days_of_treatment"	Nipponbare	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299266	SRR4104645	paired-end	crown	no_collect	"Zn_Efficient,8_days_of_treatment"	Nipponbare	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299258	SRR4104637	paired-end	crown	no_collect	"Zn_deficiency,8_days_of_treatment"	IR55179-3B-11-3	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299259	SRR4104638	paired-end	crown	no_collect	"Zn_deficiency,8_days_of_treatment"	IR64	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299268	SRR4104647	paired-end	crown	no_collect	"Zn_Efficient,8_days_of_treatment"	RIL46	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299261	SRR4104640	paired-end	crown	no_collect	"Zn_deficiency,8_days_of_treatment"	IR74	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299262	SRR4104641	paired-end	crown	no_collect	"Zn_deficiency,8_days_of_treatment"	RIL46	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299263	SRR4104642	paired-end	crown	no_collect	"Zn_deficiency,8_days_of_treatment"	Kinandang Patong	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299264	SRR4104643	paired-end	crown	no_collect	"Zn_Efficient,8_days_of_treatment"	IR55179-3B-11-3	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299265	SRR4104644	paired-end	crown	no_collect	"Zn_Efficient,8_days_of_treatment"	IR64	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299269	SRR4104648	paired-end	crown	no_collect	"Zn_Efficient,8_days_of_treatment"	Kinandang Patong	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE86272	GSM2299267	SRR4104646	paired-end	crown	no_collect	"Zn_Efficient,8_days_of_treatment"	IR74	Transcriptomic study of rice crowns from genotypes differing in tolerance to Zn deficiency	Illumina HiSeq 2500
GSE115371	GSM3176761	SRR7265373	single-end	embryo	no_collect	dry seed 0 h	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176762	SRR7265374	single-end	embryo	no_collect	dry seed 0 h	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176763	SRR7265375	single-end	embryo	no_collect	dry seed 0 h	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176764	SRR7265376	single-end	embryo	no_collect	1hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176765	SRR7265377	single-end	embryo	no_collect	1hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176766	SRR7265378	single-end	embryo	no_collect	1hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176767	SRR7265379	single-end	embryo	no_collect	1hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176768	SRR7265380	single-end	embryo	no_collect	1hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176769	SRR7265381	single-end	embryo	no_collect	1hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176770	SRR7265382	single-end	embryo	no_collect	3hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176771	SRR7265383	single-end	embryo	no_collect	3hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176772	SRR7265384	single-end	embryo	no_collect	3hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176773	SRR7265385	single-end	embryo	no_collect	3hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176774	SRR7265386	single-end	embryo	no_collect	3hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176775	SRR7265387	single-end	embryo	no_collect	3hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176776	SRR7265388	single-end	embryo	no_collect	12hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176777	SRR7265389	single-end	embryo	no_collect	12hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176778	SRR7265390	single-end	embryo	no_collect	12hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176779	SRR7265391	single-end	embryo	no_collect	12hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176780	SRR7265392	single-end	embryo	no_collect	12hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176781	SRR7265393	single-end	embryo	no_collect	12hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176782	SRR7265394	single-end	embryo	no_collect	24hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176783	SRR7265395	single-end	embryo	no_collect	24hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176784	SRR7265396	single-end	embryo	no_collect	24hA	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176785	SRR7265397	single-end	embryo	no_collect	24hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176786	SRR7265398	single-end	embryo	no_collect	24hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE115371	GSM3176787	SRR7265399	single-end	embryo	no_collect	24hN	Amaroo	RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)	Illumina HiSeq 1500
GSE73220	GSM1888887	SRR2338866	paired-end	endosprem	grain_filling_stage	control	Nipponbare	RNA-Seq of rice endosperm under high temperature	Illumina Genome Analyzer
GSE73220	GSM1888888	SRR2338867	paired-end	endosprem	grain_filling_stage	control	Nipponbare	RNA-Seq of rice endosperm under high temperature	Illumina Genome Analyzer
GSE73220	GSM1888889	SRR2338868	paired-end	endosprem	grain_filling_stage	high_temperature	Nipponbare	RNA-Seq of rice endosperm under high temperature	Illumina Genome Analyzer
GSE73220	GSM1888890	SRR2338869	paired-end	endosprem	grain_filling_stage	high_temperature	Nipponbare	RNA-Seq of rice endosperm under high temperature	Illumina Genome Analyzer
GSE50778	GSM1229044	SRR976168	single-end	flag_leaf	no_collect	wild_type	Nipponbare	Control of agricultural traits by hc-siRNA associated MITEs in rice	Illumina Genome Analyzer
GSE89233	GSM2362452	SRR4457231	paired-end	flag_leaf	after_heading	DAH4	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362453	SRR4457232	paired-end	flag_leaf	after_heading	DAH4	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362454	SRR4457233	paired-end	flag_leaf	after_heading	DAH4	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362455	SRR4457234	paired-end	flag_leaf	after_heading	DAH12	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362456	SRR4457235	paired-end	flag_leaf	after_heading	DAH12	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362457	SRR4457236	paired-end	flag_leaf	after_heading	DAH12	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362458	SRR4457237	paired-end	flag_leaf	after_heading	DAH20	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362459	SRR4457238	paired-end	flag_leaf	after_heading	DAH20	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362460	SRR4457239	paired-end	flag_leaf	after_heading	DAH20	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362461	SRR4457240	paired-end	flag_leaf	after_heading	DAH28	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362462	SRR4457241	paired-end	flag_leaf	after_heading	DAH28	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362463	SRR4457242	paired-end	flag_leaf	after_heading	DAH28	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362464	SRR4457243	paired-end	flag_leaf	after_heading	DAH36	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362465	SRR4457244	paired-end	flag_leaf	after_heading	DAH36	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362466	SRR4457245	paired-end	flag_leaf	after_heading	DAH36	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362467	SRR4457246	paired-end	flag_leaf	after_heading	DAH44	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362468	SRR4457247	paired-end	flag_leaf	after_heading	DAH44	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE89233	GSM2362469	SRR4457248	paired-end	flag_leaf	after_heading	DAH44	Dongjin	Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice	Illumina HiSeq 2500
GSE56463	GSM1361891	SRR1213690	single-end	flower	no_collect	wt(flower buds)	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE56463	GSM1361892	SRR1213691	single-end	flower	no_collect	wt	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE121269	GSM3430618	SRR8060835	paired-end	leaf	3_week_old	wild_type	Nipponbare	Insights into Plant N6-Methyladenine DNA Methylation Based on High Contiguity Rice Genomes [RNA-seq]	HiSeq X Ten
GSE121269	GSM3430619	SRR8060836	paired-end	leaf	3_week_old	wild_type	Nipponbare	Insights into Plant N6-Methyladenine DNA Methylation Based on High Contiguity Rice Genomes [RNA-seq]	HiSeq X Ten
GSE121269	GSM3430620	SRR8060837	paired-end	leaf	3_week_old	wild_type	Nipponbare	Insights into Plant N6-Methyladenine DNA Methylation Based on High Contiguity Rice Genomes [RNA-seq]	HiSeq X Ten
GSE122887	GSM3487669	SRR8240824	paired-end	leaf	4_week_old	wild_type	Nipponbare	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative resistance in rice	Illumina HiSeq 2500
GSE122887	GSM3487670	SRR8240825	paired-end	leaf	4_week_old	wild_type	Nipponbare	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative resistance in rice	Illumina HiSeq 2500
GSE122887	GSM3487671	SRR8240826	paired-end	leaf	4_week_old	wild_type	Nipponbare	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative resistance in rice	Illumina HiSeq 2500
GSE122887	GSM3487663	SRR8240818	paired-end	leaf	4_week_old	wild_type	Kitaake	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative resistance in rice	Illumina HiSeq 2500
GSE122887	GSM3487664	SRR8240819	paired-end	leaf	4_week_old	wild_type	Kitaake	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative resistance in rice	Illumina HiSeq 2500
GSE122887	GSM3487665	SRR8240820	paired-end	leaf	4_week_old	wild_type	Kitaake	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative resistance in rice	Illumina HiSeq 2500
GSE76051	GSM1973422	SRR3015592	paired-end	leaf	3_days_old	wild_type_plus_1hr_shade	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE76051	GSM1973423	SRR3015594	paired-end	leaf	3_days_old	wild_type_plus_1hr_shade	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE76051	GSM1973424	SRR3015595	paired-end	leaf	3_days_old	wild_type_plus_1hr_white_light	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE76051	GSM1973425	SRR3015597	paired-end	leaf	3_days_old	wild_type_plus_1hr_white_light	Nipponbare	Genome-wide transcriptome of the coleoptile and the first leaves treated by white light or shade in rice seedlings	Illumina HiSeq 2500
GSE75131	GSM1943702	SRR2922622	single-end	leaf	no_collect	Xanthomonas_oryzae_pv._oryzicola_strain_BLS254	Nipponbare	Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae strain BLS354	Illumina HiSeq 2000
GSE75131	GSM1943703	SRR2922623	single-end	leaf	no_collect	Xanthomonas_oryzae_pv._oryzicola_strain_BLS254	Nipponbare	Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae strain BLS354	Illumina HiSeq 2000
GSE75131	GSM1943704	SRR2922624	single-end	leaf	no_collect	Xanthomonas_oryzae_pv._oryzicola_strain_BLS254	Nipponbare	Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae strain BLS354	Illumina HiSeq 2000
GSE67588	GSM1650074	SRR1952778	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BLS256	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650075	SRR1952779	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BLS256	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650076	SRR1952780	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BLS256	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650077	SRR1952781	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BLS279	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650078	SRR1952782	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BLS279	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650079	SRR1952783	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BLS279	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650080	SRR1952784	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP2286	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650081	SRR1952785	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP2286	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650082	SRR1952786	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP2286	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650083	SRR1952787	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_B8_12	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650084	SRR1952788	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_B8_12	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650085	SRR1952789	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_B8_12	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650086	SRR1952790	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_L8	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650087	SRR1952791	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_L8	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650088	SRR1952792	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_L8	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650089	SRR1952793	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_RS105	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650090	SRR1952794	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_RS105	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650091	SRR1952795	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_RS105	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650092	SRR1952796	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BXOR1	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650093	SRR1952797	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BXOR1	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650094	SRR1952798	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_BXOR1	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650095	SRR1952799	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7331	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650096	SRR1952800	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7331	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650097	SRR1952801	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7331	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650098	SRR1952802	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7341	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650099	SRR1952803	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7341	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650100	SRR1952804	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7341	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650101	SRR1952805	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7342	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650102	SRR1952806	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7342	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650103	SRR1952807	single-end	leaf	2_week_old	48_hrs_after_inoculation_with_CFBP7342	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650104	SRR1952808	single-end	leaf	2_week_old	48_hrs_after_mock_inoculation	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650105	SRR1952809	single-end	leaf	2_week_old	48_hrs_after_mock_inoculation	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE67588	GSM1650106	SRR1952810	single-end	leaf	2_week_old	48_hrs_after_mock_inoculation	Nipponbare	Host transcriptional reprogramming across diverse strains of the rice bacterial leaves streak pathogen Xanthomonas oryzae pv.oryzicola	Illumina HiSeq 2000
GSE65025	GSM1585996	SRR1761788	single-end	leaf	45_day_old	"wild_type,drought,2"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65025	GSM1585997	SRR1761789	single-end	leaf	45_day_old	"wild_type,drought,2"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65025	GSM1585998	SRR1761790	single-end	leaf	45_day_old	"wild_type,control,2"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65025	GSM1585999	SRR1761791	single-end	leaf	45_day_old	"wild_type,control,2"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65024	GSM1585988	SRR1761780	single-end	leaf	45_day_old	"wild_type,drought,1"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65024	GSM1585989	SRR1761781	single-end	leaf	45_day_old	"wild_type,drought,1"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65024	GSM1585990	SRR1761782	single-end	leaf	45_day_old	"wild_type,control,1"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65024	GSM1585991	SRR1761783	single-end	leaf	45_day_old	"wild_type,control,1"	Nipponbare	Transcriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage	Illumina Genome Analyzer
GSE65022	GSM1585980	SRR1761528	single-end	leaf	45_day_old	drought	Nipponbare	Genome-wide transcriptome analysis of rice in response to controlled drought stress at vegetative	Illumina Genome Analyzer
GSE65022	GSM1585981	SRR1761529	single-end	leaf	45_day_old	drought	Nipponbare	Genome-wide transcriptome analysis of rice in response to controlled drought stress at vegetative	Illumina Genome Analyzer
GSE65022	GSM1585982	SRR1761530	single-end	leaf	45_day_old	control	Nipponbare	Genome-wide transcriptome analysis of rice in response to controlled drought stress at vegetative	Illumina Genome Analyzer
GSE65022	GSM1585983	SRR1761531	single-end	leaf	45_day_old	control	Nipponbare	Genome-wide transcriptome analysis of rice in response to controlled drought stress at vegetative	Illumina Genome Analyzer
GSE38480	GSM943197	SRR504365	single-end	leaf	no_collect	wt	Nipponbare	Transcriptome and methylome interactions in rice hybrids	Illumina Genome Analyzer II
GSE108504	GSM2902389	SRR6417964	paired-end	leaf	3_weeks	Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi	Nipponbare	Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1	Illumina HiSeq 2000
GSE108504	GSM2902390	SRR6417965	paired-end	leaf	3_weeks	Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi	Nipponbare	Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1	Illumina HiSeq 2000
GSE108504	GSM2902391	SRR6417966	paired-end	leaf	3_weeks	Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi	Nipponbare	Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1	Illumina HiSeq 2000
GSE108504	GSM2902392	SRR6417967	paired-end	leaf	3_weeks	H2O_control	Nipponbare	Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1	Illumina HiSeq 2000
GSE108504	GSM2902393	SRR6417968	paired-end	leaf	3_weeks	H2O_control	Nipponbare	Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1	Illumina HiSeq 2000
GSE108504	GSM2902394	SRR6417969	paired-end	leaf	3_weeks	H2O_control	Nipponbare	Rice (Nipponbare) transcriptome upon inoculation with Malian Xanthomonas oryzae pv. oryzae strain MAI1	Illumina HiSeq 2000
GSE78972	GSM2082857	SRR3209769	single-end	leaf	4_week_old	Watered;Long_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082858	SRR3209770	single-end	leaf	4_week_old	Watered;Long_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082859	SRR3209771	single-end	leaf	4_week_old	Drought;Long_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082860	SRR3209772	single-end	leaf	4_week_old	Drought;Long_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082861	SRR3209773	single-end	leaf	4_week_old	Watered;Short_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082862	SRR3209774	single-end	leaf	4_week_old	Watered;Short_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082863	SRR3209775	single-end	leaf	4_week_old	Drought;Short_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082864	SRR3209776	single-end	leaf	4_week_old	Drought;Short_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082865	SRR3209777	single-end	leaf	4_week_old	Watered;Long_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082866	SRR3209778	single-end	leaf	4_week_old	Drought;Long_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082867	SRR3209779	single-end	leaf	4_week_old	Watered;Short_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE78972	GSM2082868	SRR3209780	single-end	leaf	4_week_old	Drought;Short_Day	Nipponbare	"Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice"	Illumina HiSeq 2000
GSE126961	GSM3618871	SRR8611900	paired-end	leaf	3_week_old	Non-inoculated	Nipponbare	Bayogenin 3-O-Cellobioside is a novel anti-blast metabolite produced in rice in response to Pyricularia oryzae infection	Illumina HiSeq 2000
GSE126961	GSM3618872	SRR8611901	paired-end	leaf	3_week_old	Non-inoculated	Nipponbare	Bayogenin 3-O-Cellobioside is a novel anti-blast metabolite produced in rice in response to Pyricularia oryzae infection	Illumina HiSeq 2000
GSE126961	GSM3618873	SRR8611902	paired-end	leaf	3_week_old	Non-inoculated	Nipponbare	Bayogenin 3-O-Cellobioside is a novel anti-blast metabolite produced in rice in response to Pyricularia oryzae infection	Illumina HiSeq 2000
GSE126961	GSM3618880	SRR8611909	paired-end	leaf	3_week_old	Inoculated with Pyricularia oryzae	Nipponbare	Bayogenin 3-O-Cellobioside is a novel anti-blast metabolite produced in rice in response to Pyricularia oryzae infection	Illumina HiSeq 2000
GSE126961	GSM3618881	SRR8611910	paired-end	leaf	3_week_old	Inoculated with Pyricularia oryzae	Nipponbare	Bayogenin 3-O-Cellobioside is a novel anti-blast metabolite produced in rice in response to Pyricularia oryzae infection	Illumina HiSeq 2000
GSE126961	GSM3618882	SRR8611911	paired-end	leaf	3_week_old	Inoculated with Pyricularia oryzae	Nipponbare	Bayogenin 3-O-Cellobioside is a novel anti-blast metabolite produced in rice in response to Pyricularia oryzae infection	Illumina HiSeq 2000
GSE106150	GSM2830514	SRR6216698	paired-end	leaf	3_week_old	nontransgenic rice plant	Nipponbare	Overexpression of OsNAC14 improves drought tolerance in rice	Illumina HiSeq 2500
GSE106150	GSM2830515	SRR6216699	paired-end	leaf	3_week_old	nontransgenic rice plant	Nipponbare	Overexpression of OsNAC14 improves drought tolerance in rice	Illumina HiSeq 2500
GSE56463	GSM1361893	SRR1213692	single-end	leaf	leaves_sampled_before_flowering	wt	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE56463	GSM1361894	SRR1213693	single-end	leaf	leaves_sampled_after_flowering	wt	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE109341	GSM2940029	SRR6502085	single-end	leaf	no_collect	100 mM NaCl	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940030	SRR6502086	single-end	leaf	no_collect	100 mM NaCl	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940031	SRR6502087	single-end	leaf	no_collect	100 mM NaCl	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940032	SRR6502088	single-end	leaf	no_collect	control	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940033	SRR6502089	single-end	leaf	no_collect	control	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940034	SRR6502090	single-end	leaf	no_collect	control	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940041	SRR6502097	single-end	leaf	no_collect	100 mM NaCl	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940042	SRR6502098	single-end	leaf	no_collect	100 mM NaCl	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940043	SRR6502099	single-end	leaf	no_collect	100 mM NaCl	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940044	SRR6502100	single-end	leaf	no_collect	control	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940045	SRR6502101	single-end	leaf	no_collect	control	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940046	SRR6502102	single-end	leaf	no_collect	control	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE101734	GSM2714232	SRR5856927	paired-end	leaf	two_half_leaf	control	9311	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714233	SRR5856928	paired-end	leaf	two_half_leaf	control	9311	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714234	SRR5856929	paired-end	leaf	two_half_leaf	control	9311	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714235	SRR5856930	paired-end	leaf	two_half_leaf	salt	9311	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714236	SRR5856931	paired-end	leaf	two_half_leaf	salt	9311	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714237	SRR5856932	paired-end	leaf	two_half_leaf	salt	9311	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714238	SRR5856933	paired-end	leaf	two_half_leaf	control	9L136	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714239	SRR5856934	paired-end	leaf	two_half_leaf	control	9L136	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714240	SRR5856935	paired-end	leaf	two_half_leaf	control	9L136	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714241	SRR5856936	paired-end	leaf	two_half_leaf	salt	9L136	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714242	SRR5856937	paired-end	leaf	two_half_leaf	salt	9L136	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE101734	GSM2714243	SRR5856938	paired-end	leaf	two_half_leaf	salt	9L136	RNA-seq data of two half-leaf seedlings under salt treatment and control condition	Illumina HiSeq 2500
GSE104035	GSM2788025	SRR6053392	paired-end	leaf	no_collect	ethanol solvent (untreated control)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788026	SRR6053393	paired-end	leaf	no_collect	ethanol solvent (untreated control)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788027	SRR6053394	paired-end	leaf	no_collect	ethanol solvent (untreated control)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788028	SRR6053395	paired-end	leaf	no_collect	gibberellic acid (GA)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788029	SRR6053396	paired-end	leaf	no_collect	gibberellic acid (GA)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788030	SRR6053397	paired-end	leaf	no_collect	gibberellic acid (GA)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788031	SRR6053398	paired-end	leaf	no_collect	Paclobutrazol (PB)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788032	SRR6053399	paired-end	leaf	no_collect	Paclobutrazol (PB)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104035	GSM2788033	SRR6053400	paired-end	leaf	no_collect	Paclobutrazol (PB)	IR64	Transcriptomic analysis of gibberellic acid and paclobutrazol treated rice seedlings under submergence	Illumina HiSeq 2000
GSE104928	GSM2810186	SRR6168973	paired-end	leaf	Seedling_stage	none (control)	Caidao	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810187	SRR6168974	paired-end	leaf	Seedling_stage	none (control)	Caidao	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810188	SRR6168975	paired-end	leaf	Seedling_stage	none (control)	Caidao	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810189	SRR6168976	paired-end	leaf	Seedling_stage	0.5% Na2CO3 solution for 36h	Caidao	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810190	SRR6168977	paired-end	leaf	Seedling_stage	0.5% Na2CO3 solution for 36h	Caidao	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810191	SRR6168978	paired-end	leaf	Seedling_stage	0.5% Na2CO3 solution for 36h	Caidao	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810192	SRR6168979	paired-end	leaf	Seedling_stage	none (control)	WD20342	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810193	SRR6168980	paired-end	leaf	Seedling_stage	none (control)	WD20342	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810194	SRR6168981	paired-end	leaf	Seedling_stage	none (control)	WD20342	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810195	SRR6168982	paired-end	leaf	Seedling_stage	0.5% Na2CO3 solution for 36h	WD20342	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810196	SRR6168983	paired-end	leaf	Seedling_stage	0.5% Na2CO3 solution for 36h	WD20342	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE104928	GSM2810197	SRR6168984	paired-end	leaf	Seedling_stage	0.5% Na2CO3 solution for 36h	WD20342	Transcriptome analysis reveals important alkali-responsive genes and key pathways in rice under alkaline stress	Illumina HiSeq 2000
GSE126650	GSM3610456	SRR8582888	single-end	panicle	no_collect	AM	Nipponbare	Analysis of differential gene expression and alternative splicing is significantly influenced by choice of mapping genome	Illumina HiSeq 2500
GSE126650	GSM3610457	SRR8582889	single-end	panicle	no_collect	AM	Nipponbare	Analysis of differential gene expression and alternative splicing is significantly influenced by choice of mapping genome	Illumina HiSeq 2500
GSE126650	GSM3610458	SRR8582890	single-end	panicle	no_collect	AM	Nipponbare	Analysis of differential gene expression and alternative splicing is significantly influenced by choice of mapping genome	Illumina HiSeq 2500
GSE126650	GSM3610459	SRR8582891	single-end	panicle	no_collect	PM	Nipponbare	Analysis of differential gene expression and alternative splicing is significantly influenced by choice of mapping genome	Illumina HiSeq 2500
GSE126650	GSM3610460	SRR8582892	single-end	panicle	no_collect	PM	Nipponbare	Analysis of differential gene expression and alternative splicing is significantly influenced by choice of mapping genome	Illumina HiSeq 2500
GSE126650	GSM3610461	SRR8582893	single-end	panicle	no_collect	PM	Nipponbare	Analysis of differential gene expression and alternative splicing is significantly influenced by choice of mapping genome	Illumina HiSeq 2500
GSE92302	GSM2425416	SRR5110429	single-end	panicle	50%_flowering	Dawn	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425417	SRR5110430	single-end	panicle	50%_flowering	Dawn	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425418	SRR5110431	single-end	panicle	50%_flowering	Dawn	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425419	SRR5110432	single-end	panicle	50%_flowering	Dawn	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425420	SRR5110433	single-end	panicle	50%_flowering	Dawn + 3.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425421	SRR5110434	single-end	panicle	50%_flowering	Dawn + 3.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425422	SRR5110435	single-end	panicle	50%_flowering	Dawn + 3.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425423	SRR5110436	single-end	panicle	50%_flowering	Dawn + 3.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425424	SRR5110437	single-end	panicle	50%_flowering	Dawn + 7h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425425	SRR5110438	single-end	panicle	50%_flowering	Dawn + 7h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425426	SRR5110439	single-end	panicle	50%_flowering	Dawn + 7h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425427	SRR5110440	single-end	panicle	50%_flowering	Dawn + 7h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425428	SRR5110441	single-end	panicle	50%_flowering	Dawn + 10.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425429	SRR5110442	single-end	panicle	50%_flowering	Dawn + 10.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425430	SRR5110443	single-end	panicle	50%_flowering	Dawn + 10.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425431	SRR5110444	single-end	panicle	50%_flowering	Dawn + 10.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425432	SRR5110445	single-end	panicle	50%_flowering	Dusk	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425433	SRR5110446	single-end	panicle	50%_flowering	Dusk	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425434	SRR5110447	single-end	panicle	50%_flowering	Dusk	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425435	SRR5110448	single-end	panicle	50%_flowering	Dusk	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425436	SRR5110449	single-end	panicle	50%_flowering	Dawn + 14h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425437	SRR5110450	single-end	panicle	50%_flowering	Dawn + 14h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425438	SRR5110451	single-end	panicle	50%_flowering	Dawn + 14h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425439	SRR5110452	single-end	panicle	50%_flowering	Dawn + 14h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425440	SRR5110453	single-end	panicle	50%_flowering	Dawn + 17.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425441	SRR5110454	single-end	panicle	50%_flowering	Dawn + 17.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425442	SRR5110455	single-end	panicle	50%_flowering	Dawn + 17.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425443	SRR5110456	single-end	panicle	50%_flowering	Dawn + 17.5h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425444	SRR5110457	single-end	panicle	50%_flowering	Dawn + 21h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425445	SRR5110458	single-end	panicle	50%_flowering	Dawn + 21h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425446	SRR5110459	single-end	panicle	50%_flowering	Dawn + 21h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE92302	GSM2425447	SRR5110460	single-end	panicle	50%_flowering	Dawn + 21h	IR64	Temporal anaylsis of mRNA from pannicle tissue from field grown rice	Illumina HiSeq 2500
GSE56463	GSM1361897	SRR1213696	single-end	endosprem	no_collect	wt(milk grains)	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE56463	GSM1361898	SRR1213697	single-end	endosprem	no_collect	wt(mature seeds)	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE49633	GSM1203190	SRR1633182	single-end	panicle	Inflorescence_7_stage	WT	Dongjin	The Polycomb Group Gene EMF2B is required for meristem determinacy and organ specification in rice flowers.	Illumina Genome Analyzer Ilx
GSE49633	GSM1203191	SRR1633185	single-end	panicle	Inflorescence_7_stage	WT	Dongjin	The Polycomb Group Gene EMF2B is required for meristem determinacy and organ specification in rice flowers.	Illumina Genome Analyzer Ilx
GSE95200	GSM2498562	SRR5278374	paired-end	pistil	before_meiosis	"Balilla,S1"	Balilla	RNA-seq analysis of genes regulated by S5 at different development stages	Illumina HiSeq 2000
GSE95200	GSM2498563	SRR5278375	paired-end	pistil	before_meiosis	"Balilla,S1"	Balilla	RNA-seq analysis of genes regulated by S5 at different development stages	Illumina HiSeq 2000
GSE95200	GSM2498564	SRR5278376	paired-end	pistil	during_meiosis	"Balilla,S2"	Balilla	RNA-seq analysis of genes regulated by S5 at different development stages	Illumina HiSeq 2000
GSE95200	GSM2498565	SRR5278377	paired-end	pistil	during_meiosis	"Balilla,S2"	Balilla	RNA-seq analysis of genes regulated by S5 at different development stages	Illumina HiSeq 2000
GSE95200	GSM2498566	SRR5278378	paired-end	pistil	after_meiosis	"Balilla,S3"	Balilla	RNA-seq analysis of genes regulated by S5 at different development stages	Illumina HiSeq 2000
GSE95200	GSM2498567	SRR5278379	paired-end	pistil	after_meiosis	"Balilla,S3"	Balilla	RNA-seq analysis of genes regulated by S5 at different development stages	Illumina HiSeq 2000
GSE92835	GSM2437889	SRR5126147	paired-end	root	7_day_old	"mock,1_day"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437890	SRR5126148	paired-end	root	7_day_old	"mock,1_day"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437891	SRR5126149	paired-end	root	7_day_old	"mock,1_day"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437892	SRR5126150	paired-end	root	7_day_old	"auxin(50CM_2,4_D),1_day"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437893	SRR5126151	paired-end	root	7_day_old	"auxin(50CM_2,4_D),1_day"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437894	SRR5126152	paired-end	root	7_day_old	"auxin(50CM_2,4_D),1_day"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437895	SRR5126153	paired-end	root	7_day_old	"mock,7_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437896	SRR5126155	paired-end	root	7_day_old	"mock,7_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437897	SRR5126157	paired-end	root	7_day_old	"mock,7_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437898	SRR5126159	paired-end	root	7_day_old	"auxin(50CM_2,4_D),7_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437899	SRR5126161	paired-end	root	7_day_old	"auxin(50CM_2,4_D),7_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437900	SRR5126163	paired-end	root	7_day_old	"auxin(50CM_2,4_D),7_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437901	SRR5126165	paired-end	root	7_day_old	"mock,14_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437902	SRR5126167	paired-end	root	7_day_old	"mock,14_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437903	SRR5126169	paired-end	root	7_day_old	"mock,14_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437904	SRR5126171	paired-end	root	7_day_old	"auxin(50CM_2,4_D),14_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437905	SRR5126173	paired-end	root	7_day_old	"auxin(50CM_2,4_D),14_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE92835	GSM2437906	SRR5126175	paired-end	root	7_day_old	"auxin(50CM_2,4_D),14_days"	Nipponbare	Regulation of gene expression during formation of nodule-like structures (NLS) in rice root	Illumina HiSeq 2500
GSE81069	GSM2142078	SRR3472897	paired-end	root	2_week_old	nontransgenic_rice_plant	Nipponbare	The regulatory network of OsNAC6 targets drought-related genes orchestrating rice drought tolerance (RNA-Seq)	Illumina HiSeq 2000
GSE81069	GSM2142081	SRR3472900	paired-end	root	2_week_old	nontransgenic_rice_plant	Hwayoung	The regulatory network of OsNAC6 targets drought-related genes orchestrating rice drought tolerance (RNA-Seq)	Illumina HiSeq 2000
GSE56463	GSM1361895	SRR1213694	single-end	root	roots_sampled_before_flowering	wt	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE56463	GSM1361896	SRR1213695	single-end	root	roots_sampled_after_flowering	wt	Japonica	Transcriptome profiling of various organs at different developmental stages in rice (single-end)	Illumina HiSeq 2500
GSE89494	GSM2373864	SRR4947478	single-end	root	no_collect	control	IR64	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373865	SRR4947479	single-end	root	no_collect	control	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373866	SRR4947480	single-end	root	no_collect	control	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373867	SRR4947481	single-end	root	no_collect	control	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373868	SRR4947482	single-end	root	no_collect	Al	IR64	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373869	SRR4947483	single-end	root	no_collect	Al	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373870	SRR4947484	single-end	root	no_collect	Al	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373871	SRR4947485	single-end	root	no_collect	Al	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373873	SRR4947487	single-end	root	no_collect	control	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373874	SRR4947488	single-end	root	no_collect	control	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373875	SRR4947489	single-end	root	no_collect	control	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373876	SRR4947490	single-end	root	no_collect	Al	IR64	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373877	SRR4947491	single-end	root	no_collect	Al	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373878	SRR4947492	single-end	root	no_collect	Al	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373879	SRR4947493	single-end	root	no_collect	Al	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373880	SRR4947494	single-end	root	no_collect	control	IR64	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373881	SRR4947495	single-end	root	no_collect	control	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373882	SRR4947496	single-end	root	no_collect	control	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373883	SRR4947497	single-end	root	no_collect	control	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373884	SRR4947498	single-end	root	no_collect	Al	IR64	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373885	SRR4947499	single-end	root	no_collect	Al	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373886	SRR4947500	single-end	root	no_collect	Al	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373887	SRR4947501	single-end	root	no_collect	Al	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373888	SRR4947502	single-end	root	no_collect	control	IR64	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373889	SRR4947503	single-end	root	no_collect	control	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373890	SRR4947504	single-end	root	no_collect	control	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373891	SRR4947505	single-end	root	no_collect	control	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373892	SRR4947506	single-end	root	no_collect	Al	IR64	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373893	SRR4947507	single-end	root	no_collect	Al	IR64NIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373894	SRR4947508	single-end	root	no_collect	Al	Azucena	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE89494	GSM2373895	SRR4947509	single-end	root	no_collect	Al	AzuNIL	Whole genome transcriptional responses to aluminum stress in rice roots	Illumina HiSeq 2000
GSE109341	GSM2940035	SRR6502091	single-end	root	no_collect	100 mM NaCl	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940036	SRR6502092	single-end	root	no_collect	100 mM NaCl	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940037	SRR6502093	single-end	root	no_collect	100 mM NaCl	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940038	SRR6502094	single-end	root	no_collect	control	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940039	SRR6502095	single-end	root	no_collect	control	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940040	SRR6502096	single-end	root	no_collect	control	Vialone_Nano	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940047	SRR6502103	single-end	root	no_collect	100 mM NaCl	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940048	SRR6502104	single-end	root	no_collect	100 mM NaCl	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940049	SRR6502105	single-end	root	no_collect	100 mM NaCl	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940050	SRR6502106	single-end	root	no_collect	control	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940051	SRR6502107	single-end	root	no_collect	control	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE109341	GSM2940052	SRR6502108	single-end	root	no_collect	control	Baldo	Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity	Illumina HiSeq 2000
GSE64665	GSM1576596	SRR1740434	single-end	root_differentiation_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576597	SRR1740435	single-end	root_differentiation_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576598	SRR1740436	single-end	root_differentiation_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576593	SRR1740431	single-end	root_elongation_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576594	SRR1740432	single-end	root_elongation_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576595	SRR1740433	single-end	root_elongation_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576590	SRR1740428	single-end	root_meristematic_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576591	SRR1740429	single-end	root_meristematic_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE64665	GSM1576592	SRR1740430	single-end	root_meristematic_zone	4_days_after_plating	wt	Japonica	Conserved Molecular Program for Root Development in Diverse Plants	Illumina HiSeq 2000
GSE108782	GSM2913197	SRR6441554	paired-end	seedling	3_week_old	wild_type	Nipponbare	Insights into Plant N6-Methyladenine DNA Methylation Based on Improved Rice Genomes [RNA-Seq Nipponbare]	Illumina HiSeq 2500
GSE108782	GSM2913198	SRR6441555	paired-end	seedling	3_week_old	wild_type	Nipponbare	Insights into Plant N6-Methyladenine DNA Methylation Based on Improved Rice Genomes [RNA-Seq Nipponbare]	Illumina HiSeq 2500
GSE71925	GSM1847459	SRR2154086	paired-end	seedling	1_week	wt	Nipponbare	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina Genome Analyzer II
GSE71925	GSM1847455	SRR2154082	paired-end	seedling	1_week	wt	Guangluai4	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina Genome Analyzer II
GSE71925	GSM1847456	SRR2154083	paired-end	seedling	1_week	wt	KDM105	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina Genome Analyzer II
GSE71925	GSM1847457	SRR2154084	paired-end	seedling	1_week	wt	Rathuwee	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina Genome Analyzer II
GSE71925	GSM1847458	SRR2154085	paired-end	seedling	1_week	wt	Heukgyeong	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina Genome Analyzer II
GSE71925	GSM1847460	SRR2154087	paired-end	seedling	1_week	wt	Taipei309	Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)	Illumina Genome Analyzer II
GSE76798	GSM2038042	SRR3098741	paired-end	seedling	2_week	wt	Nipponbare	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants (I)	Illumina HiSeq 2500
GSE76798	GSM2038042	SRR3098742	paired-end	seedling	2_week	wt	Nipponbare	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants (I)	Illumina HiSeq 2500
GSE76798	GSM2038042	SRR3098743	paired-end	seedling	2_week	wt	Nipponbare	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants (I)	Illumina HiSeq 2500
GSE74465	GSM1921121	SRR2857719	paired-end	seedling	three_leaves_stage	drought_stress_0h	Nipponbare	Genome-wide identification of Drought-responsive Regulatory Coding and Non-coding Transcripts from Oryza sativa L. by deep RNA sequencing	Illumina HiSeq 2000
GSE74465	GSM1921122	SRR2857720	paired-end	seedling	three_leaves_stage	drought_stress_1h	Nipponbare	Genome-wide identification of Drought-responsive Regulatory Coding and Non-coding Transcripts from Oryza sativa L. by deep RNA sequencing	Illumina HiSeq 2000
GSE74465	GSM1921123	SRR2857721	paired-end	seedling	three_leaves_stage	drought_stress_6h	Nipponbare	Genome-wide identification of Drought-responsive Regulatory Coding and Non-coding Transcripts from Oryza sativa L. by deep RNA sequencing	Illumina HiSeq 2000
GSE67373	GSM1645626	SRR1944582	single-end	seedling	15_day_old	"with_chilling_teatment_(4C,33h)"	Nipponbare	A global profiling of gene expression in chilling stress in rice	Illumina HiSeq 2000
GSE67373	GSM1645627	SRR1944583	single-end	seedling	15_day_old	no_treatment	Nipponbare	A global profiling of gene expression in chilling stress in rice	Illumina HiSeq 2000
GSE33265	GSM823081	SRR358791	single-end	seedling	2_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE33265	GSM823081	SRR358792	single-end	seedling	2_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE33265	GSM823082	SRR358793	single-end	seedling	2_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE33265	GSM823082	SRR358794	single-end	seedling	2_week_old	wt	Nipponbare	Transcriptome of rice seedling and callus based on RNA-seq method	Illumina Genome Analyzer II
GSE57707	GSM1387095	SRR1288363	paired-end	shoot	no_collect	"none,3_days_post_infection"	Nipponbare	Systemic suppression of the rice shoot metabolism upon roots rot nematode infection	Illumina Genome Analyzer Iix
GSE57707	GSM1387096	SRR1288364	paired-end	shoot	no_collect	"none,3_days_post_infection"	Nipponbare	Systemic suppression of the rice shoot metabolism upon roots rot nematode infection	Illumina Genome Analyzer Iix
GSE57707	GSM1387097	SRR1288365	paired-end	shoot	no_collect	"none,7_days_post_infection"	Nipponbare	Systemic suppression of the rice shoot metabolism upon roots rot nematode infection	Illumina Genome Analyzer Iix
GSE57707	GSM1387098	SRR1288366	paired-end	shoot	no_collect	"none,7_days_post_infection"	Nipponbare	Systemic suppression of the rice shoot metabolism upon roots rot nematode infection	Illumina Genome Analyzer Iix
GSE57707	GSM1387100	SRR1288368	paired-end	shoot	no_collect	"roots_rot_nematode_(H._oryzae),3_days_post_infection"	Nipponbare	Systemic suppression of the rice shoot metabolism upon roots rot nematode infection	Illumina Genome Analyzer Iix
GSE57707	GSM1387101	SRR1288369	paired-end	shoot	no_collect	"roots_rot_nematode_(H._oryzae),7_days_post_infection"	Nipponbare	Systemic suppression of the rice shoot metabolism upon roots rot nematode infection	Illumina Genome Analyzer Iix
GSE57707	GSM1387102	SRR1288370	paired-end	shoot	no_collect	"roots_rot_nematode_(H._oryzae),7_days_post_infection"	Nipponbare	Systemic suppression of the rice shoot metabolism upon roots rot nematode infection	Illumina Genome Analyzer Iix
GSE89449	GSM2372369	SRR4841740	paired-end	shoot	no_collect	shoots_of_Meloidogyne_graminicola_infected_3_dai	Nipponbare	Below ground attack by roots knot nematode Meloidogyne graminicola predisposes rice to blast disease	Illumina Genome Analyzer Iix
GSE89449	GSM2372370	SRR4841741	paired-end	shoot	no_collect	shoots_of_Meloidogyne_graminicola_infected_3_dai	Nipponbare	Below ground attack by roots knot nematode Meloidogyne graminicola predisposes rice to blast disease	Illumina Genome Analyzer Iix
GSE89449	GSM2372371	SRR4841742	paired-end	shoot	no_collect	shoots_of_Meloidogyne_graminicola_infected_7_dai	Nipponbare	Below ground attack by roots knot nematode Meloidogyne graminicola predisposes rice to blast disease	Illumina Genome Analyzer Iix
GSE89449	GSM2372372	SRR4841743	paired-end	shoot	no_collect	shoots_of_Meloidogyne_graminicola_infected_7_dai	Nipponbare	Below ground attack by roots knot nematode Meloidogyne graminicola predisposes rice to blast disease	Illumina Genome Analyzer Iix
GSE84800	GSM2251588	SRR3950244	single-end	shoot	21_day_old	Drought_during_3_days;Fr13_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251589	SRR3950245	single-end	shoot	21_day_old	Drought_during_3_days;Fr13_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251590	SRR3950246	single-end	shoot	21_day_old	Drought_during_3_days;Fr13_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251591	SRR3950247	single-end	shoot	21_day_old	No_DIS;Fr13_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251592	SRR3950248	single-end	shoot	21_day_old	No_DIS;Fr13_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251593	SRR3950249	single-end	shoot	21_day_old	No_DIS;Fr13_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251594	SRR3950250	single-end	shoot	21_day_old	Drought_during_3_days;_mock_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251595	SRR3950251	single-end	shoot	21_day_old	Drought_during_3_days;_mock_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251596	SRR3950252	single-end	shoot	21_day_old	Drought_during_3_days;_mock_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251597	SRR3950253	single-end	shoot	21_day_old	No_DIS;_mock_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251598	SRR3950254	single-end	shoot	21_day_old	No_DIS;_mock_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE84800	GSM2251599	SRR3950255	single-end	shoot	21_day_old	No_DIS;_mock_inoculated	Nipponbare	Molecular basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae	Illumina HiSeq 2000
GSE100715	GSM2691952	SRR5796940	single-end	shoot	2_week_old	"Control,22C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691953	SRR5796941	single-end	shoot	2_week_old	"Control,22C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691954	SRR5796942	single-end	shoot	2_week_old	"Control,22C for 10 min, then 30C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691955	SRR5796943	single-end	shoot	2_week_old	"Control,22C for 10 min, then 30C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691956	SRR5796944	single-end	shoot	2_week_old	"Control, 22C for 10 min, then 30C for 50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691957	SRR5796945	single-end	shoot	2_week_old	"Control, 22C for 10 min, then 30C for 50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691958	SRR5796946	single-end	shoot	2_week_old	"Control,22C for 10 min, then 30C for 1h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691959	SRR5796947	single-end	shoot	2_week_old	"Control,22C for 10 min, then 30C for 1h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691960	SRR5796948	single-end	shoot	2_week_old	"Control,22C for 10 min, then 30C for 9h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691961	SRR5796949	single-end	shoot	2_week_old	"Control,22C for 10 min, then 30C for 9h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691962	SRR5796950	single-end	shoot	2_week_old	"Heat,42C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691963	SRR5796951	single-end	shoot	2_week_old	"Heat,42C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691964	SRR5796952	single-end	shoot	2_week_old	"Heat,42C for 10 min, then 30C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691965	SRR5796953	single-end	shoot	2_week_old	"Heat,42C for 10 min, then 30C for 10 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691966	SRR5796954	single-end	shoot	2_week_old	"Heat, 42C for 10 min, then 30C for 50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691967	SRR5796955	single-end	shoot	2_week_old	"Heat, 42C for 10 min, then 30C for 50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691968	SRR5796956	single-end	shoot	2_week_old	"Heat,42C for 10 min, then 30C for 1h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691969	SRR5796957	single-end	shoot	2_week_old	"Heat,42C for 10 min, then 30C for 1h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691970	SRR5796958	single-end	shoot	2_week_old	"Heat,42C for 10 min, then 30C for 9h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE100715	GSM2691971	SRR5796959	single-end	shoot	2_week_old	"Heat,42C for 10 min, then 30C for 9h50 min"	Nipponbare	Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome	Illumina HiSeq 2500
GSE90493	GSM2402820	SRR5052708	single-end	shoot_apical_meristem	6_week_old	0_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402821	SRR5052709	single-end	shoot_apical_meristem	6_week_old	0_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402822	SRR5052710	single-end	shoot_apical_meristem	6_week_old	0_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402823	SRR5052711	single-end	shoot_apical_meristem	6_week_old	4_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402825	SRR5052713	single-end	shoot_apical_meristem	6_week_old	4_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402826	SRR5052714	single-end	shoot_apical_meristem	6_week_old	4_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402828	SRR5052716	single-end	shoot_apical_meristem	6_week_old	8_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402831	SRR5052719	single-end	shoot_apical_meristem	6_week_old	8_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402832	SRR5052720	single-end	shoot_apical_meristem	6_week_old	8_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402833	SRR5052721	single-end	shoot_apical_meristem	6_week_old	12_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402834	SRR5052722	single-end	shoot_apical_meristem	6_week_old	12_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402835	SRR5052723	single-end	shoot_apical_meristem	6_week_old	12_days_after_shift	Nipponbare	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402836	SRR5052724	single-end	shoot_apical_meristem	6_week_old	0_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402837	SRR5052725	single-end	shoot_apical_meristem	6_week_old	0_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402838	SRR5052726	single-end	shoot_apical_meristem	6_week_old	0_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402839	SRR5052727	single-end	shoot_apical_meristem	6_week_old	4_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402840	SRR5052728	single-end	shoot_apical_meristem	6_week_old	4_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402842	SRR5052730	single-end	shoot_apical_meristem	6_week_old	4_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402843	SRR5052731	single-end	shoot_apical_meristem	6_week_old	8_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402844	SRR5052732	single-end	shoot_apical_meristem	6_week_old	8_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402845	SRR5052733	single-end	shoot_apical_meristem	6_week_old	8_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402846	SRR5052734	single-end	shoot_apical_meristem	6_week_old	12_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE90493	GSM2402847	SRR5052735	single-end	shoot_apical_meristem	6_week_old	12_days_after_shift	Taichung 65	PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice	Illumina HiSeq 2000
GSE62554	GSM1528766	SRR1617549	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE62554	GSM1528767	SRR1617550	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE62554	GSM1528768	SRR1617553	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE62554	GSM1528769	SRR1617554	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE62554	GSM1528770	SRR1617556	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE62554	GSM1528771	SRR1617557	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE62554	GSM1528772	SRR1617558	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE62554	GSM1528773	SRR1617559	single-end	shoot_apical_meristem	no_collect	no collect	Nipponbare	"Rare Allele of A Novel Histone H4 Acetyltransferase Enhances Grain Weight, Yield and Plant Biomass Presumably Through the Regulation of Transcription"	Illumina Genome Analyzer Iix
GSE77300	GSM2048352	SRR3129121	paired-end	spikelet	anther_development_stage_3	Wild_type_9522_S3	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048353	SRR3129122	paired-end	spikelet	anther_development_stage_3	Wild_type_9522_S3	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048354	SRR3129123	paired-end	spikelet	anther_development_stage_3	Wild_type_9522_S3	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048355	SRR3129124	paired-end	spikelet	anther_development_stage_5	Wild_type_9522_S5	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048356	SRR3129125	paired-end	spikelet	anther_development_stage_5	Wild_type_9522_S5	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048357	SRR3129126	paired-end	spikelet	anther_development_stage_5	Wild_type_9522_S5	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048358	SRR3129127	paired-end	spikelet	anther_development_stage_7	Wild_type_9522_S7	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048359	SRR3129128	paired-end	spikelet	anther_development_stage_7	Wild_type_9522_S7	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE77300	GSM2048360	SRR3129129	paired-end	spikelet	anther_development_stage_7	Wild_type_9522_S7	9522	"A Widespread Impact on Small RNAs and Gene Networks in Rice msp1/ostdl1a Mutants, Partners with Key Roles in Anther Development"	Illumina HiSeq 2000
GSE119109	GSM3358179	SRR7760291	single-end	spikelet	anthesis_stage	control condition (29C) for 7 hrs	IRGA_428	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358180	SRR7760292	single-end	spikelet	anthesis_stage	control condition (29C) for 7 hrs	IRGA_428	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358181	SRR7760293	single-end	spikelet	anthesis_stage	control condition (29C) for 7 hrs	IRGA_428	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358182	SRR7760294	single-end	spikelet	anthesis_stage	high temperature treatment (38C) for 7 hrs	IRGA_428	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358183	SRR7760295	single-end	spikelet	anthesis_stage	high temperature treatment (38C) for 7 hrs	IRGA_428	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358184	SRR7760296	single-end	spikelet	anthesis_stage	high temperature treatment (38C) for 7 hrs	IRGA_428	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358185	SRR7760297	single-end	spikelet	anthesis_stage	control condition (29C) for 7 hrs	BR-IRGA_409	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358186	SRR7760298	single-end	spikelet	anthesis_stage	control condition (29C) for 7 hrs	BR-IRGA_409	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358187	SRR7760299	single-end	spikelet	anthesis_stage	control condition (29C) for 7 hrs	BR-IRGA_409	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358188	SRR7760300	single-end	spikelet	anthesis_stage	high temperature treatment (38C) for 7 hrs	BR-IRGA_409	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358189	SRR7760301	single-end	spikelet	anthesis_stage	high temperature treatment (38C) for 7 hrs	BR-IRGA_409	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500
GSE119109	GSM3358190	SRR7760302	single-end	spikelet	anthesis_stage	high temperature treatment (38C) for 7 hrs	BR-IRGA_409	Transcriptome analysis of flooded rice spikelet in response to high temperature at flowering	Illumina HiSeq 2500