Source:
XM_015764845.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
1710
Sequence:
AAGAUCAGGCGCCUCAAGGAUC
Length:
22
PHAS Gene Name:
LOC4352810
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC4352810, transcript variant X4
PHAS Transcript Sequence:
UUUUAUUCUCCCCUGCGCCGCCGCCGCCGCCGCCGCCUCAAUCGGGCGAAGCCGCCCUCGCCGCCGUCGCGGCGGCGGCGGCGAGGGCGAGCUCCUGCGAGAGAUCCUCCGCCGCCUCAUGCCUCGCGCGCGCGCUCCCGCUCCCGCUCUCGCCUGCAGUAUUUGUUCCAUUGCCGCGCACCACUUUCCGGUGGGCGGCGGGCAAUGCUAGGGGUUAAGAGACCUUCUCUCCCCGAGAUGGAGGCGCCGGGCGGCGCGGCGGGGGACGCGGAGGAGGAAGUUGAUGCCCGGAUCCGCUGGGUUCCAUGGUGGCUGCUAUGGAAUGGUGGAAUUGCUUGGAUGGCCACGAAGGGGAUCGACGCCAAUUGUUUGGCGACCUCUACGAUAGAAUCGCGUCGAGUCGGGGUGUUCUUUCCUGUUAUUACUAGAAGUAGUUGAAUUUCGUGAUUGAACACACAAGGAAGCUUGAUAUCGCGUCGGGGGUGUUCUUUCCUGUUAUUACUAGAUGUAGUUGGGUUUCGUGAUUGAACACCUAAGGAAAGGAAGCUUGAUAAAUGGAAGAUAGUCCAGCAAGUUUUGAAGAUGAUAGAAAAUUUGAGCGCGUCGUAGUAACUGUCGUCCACGAUCACGUCCAGUGUUGUUCAUGGCAUGGGGGAUGGAGUCAGGAUCCUUGAGGCGUCUGCUCCUGUUGCACUGCUUCAUGCCUUUCCUGCCUUCUAGGAUGCUUAAGAUGGUUGCGAAGUCAGGUGCUUGGGAGUUCAUGAAGCGGUCAUAAUCAAUUUCGCUCUCUGUAGUACUUUCUCUGGUGUCUUCCCCGUUGCUUCCUUUUGGAAGAAAAGCGUCCUUUAGAAUCUCUUGAGAGAGUGCACUUUCUCCCUCUCCUGCCAUCAGUAGUGCCUUUAUUUUCGCUUGGUUUCCGCAUCAUCAGGUGGCACUUAUAGAAAUUAUUUUAUGGAGGAAAAAGCAUUGUAUGGCAUGAUAGAAAUAUCCUUAUGGAUAAAACUAGGACACUUGCAAGUGUUCAAUGGGAGUCACCUUACCUUUUUUGCCUACCUGUCUGCAUUUCAUGAAUGGGAUUCCUUCUCCUGCGCCGGUGCUGUCUUCUCCAAUGGGAAAUGGAGGCAAGCAUCUGCCCUGUUCCAUGGUGGCAGCCAUGGAAUGAUGGGAUUUCUUUGAUGGUCAUAAAGGAGAUCAAAACCAACGGUUGGCAAUCUCUGCAGGGAUGAUGAACCAGGCUUGUAAUAUCUGUUGCUGAUUUCUUUGGAAGACAUAACGGCAGGCUUCAUGGGGCACGAUGGAUUUCAGAUGGUUGCUUCAGCCAUGUCUCAAGUUGAUGGACCUCAAGUUUCUGGGUGCAGUGCCACGAGUCUUGGUCAGCCCAAGAGUAAGCGCAGGACUGGUGACAAGGCAAGAGGGGAGAAGAAGGCACUCAAAGUUAAGAUUAACCUUGCCAGCCCGGCCAAAAAAAUUAAGAAAAGUAGCAAAAAGAAGGGCAAAAAGGGCACUGUUGCUGGCAGGAUAGGGAGAAAAUGCACUCUCUCAAGAGAUUCUAAAGGGCGCUUUCUUCCAAGAGAGAGUAAGGGGGGAGACAUCGGAGGAAAUGCUACAGAGAGUGAAGUUGAUUAUGACCGCUUCAUGAACUUUCAGGCACCUGACUUCGCUACCAUCUUAAGUAUUUUGAAAGGCUGGAAAGGCAUGAAGCAAUGUAACAAGAUCAGGCGCCUCAAGGAUCCUGACUUCGUCCCUCUCAUGAACGUCAUGAGCAACACUGGAUAUGUGACCGAGGAUGAUGGUCACUAUGAUGUGCUGAAAGUCUUGAUGCAUGCAGAUGGCUGGUCUGCAUAGUGAUUCAAGCUCUCAAAUCAAAACAUUCAGGCCUAUGGCCUUGUUGCUAGAACAGUGGUUUCUUCUUUCACCUUUAAAACUUGAUGGACUUUGUUCCAUUUAUCUUAGAAAUUUUGUUGCCCUUGAGUCCGGUGGAUAUGUACUGGAGUAUGCUAUACUGGGUGAUUUAAUGGUGAUAAUGUUAAAUCUUGAUACUAGUUCUACCUUUUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
238
NEP:
86.86%
LE_num:
LEP:
1.82%
ME_num:
MEP:
11.31%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.97
Avg Expression:
20.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -9.40918659823638 | 0.00333256763309782 |
2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 11.7315356717189 | 4.87448005339092e-08 |
3 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 10.099359080721 | 2.26748399054738e-08 |