Osa-phasi12g1992


Function Link


Basic Info

Source:

XM_015764845.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

1689

Sequence:

AAAGGCAUGAAGCAAUGUAACA

Length:

22

PHAS Gene Name:

LOC4352810

Chr:

Chr12

PHAS Transcript Annotation:

uncharacterized LOC4352810, transcript variant X4

PHAS Transcript Sequence:

UUUUAUUCUCCCCUGCGCCGCCGCCGCCGCCGCCGCCUCAAUCGGGCGAAGCCGCCCUCGCCGCCGUCGCGGCGGCGGCGGCGAGGGCGAGCUCCUGCGAGAGAUCCUCCGCCGCCUCAUGCCUCGCGCGCGCGCUCCCGCUCCCGCUCUCGCCUGCAGUAUUUGUUCCAUUGCCGCGCACCACUUUCCGGUGGGCGGCGGGCAAUGCUAGGGGUUAAGAGACCUUCUCUCCCCGAGAUGGAGGCGCCGGGCGGCGCGGCGGGGGACGCGGAGGAGGAAGUUGAUGCCCGGAUCCGCUGGGUUCCAUGGUGGCUGCUAUGGAAUGGUGGAAUUGCUUGGAUGGCCACGAAGGGGAUCGACGCCAAUUGUUUGGCGACCUCUACGAUAGAAUCGCGUCGAGUCGGGGUGUUCUUUCCUGUUAUUACUAGAAGUAGUUGAAUUUCGUGAUUGAACACACAAGGAAGCUUGAUAUCGCGUCGGGGGUGUUCUUUCCUGUUAUUACUAGAUGUAGUUGGGUUUCGUGAUUGAACACCUAAGGAAAGGAAGCUUGAUAAAUGGAAGAUAGUCCAGCAAGUUUUGAAGAUGAUAGAAAAUUUGAGCGCGUCGUAGUAACUGUCGUCCACGAUCACGUCCAGUGUUGUUCAUGGCAUGGGGGAUGGAGUCAGGAUCCUUGAGGCGUCUGCUCCUGUUGCACUGCUUCAUGCCUUUCCUGCCUUCUAGGAUGCUUAAGAUGGUUGCGAAGUCAGGUGCUUGGGAGUUCAUGAAGCGGUCAUAAUCAAUUUCGCUCUCUGUAGUACUUUCUCUGGUGUCUUCCCCGUUGCUUCCUUUUGGAAGAAAAGCGUCCUUUAGAAUCUCUUGAGAGAGUGCACUUUCUCCCUCUCCUGCCAUCAGUAGUGCCUUUAUUUUCGCUUGGUUUCCGCAUCAUCAGGUGGCACUUAUAGAAAUUAUUUUAUGGAGGAAAAAGCAUUGUAUGGCAUGAUAGAAAUAUCCUUAUGGAUAAAACUAGGACACUUGCAAGUGUUCAAUGGGAGUCACCUUACCUUUUUUGCCUACCUGUCUGCAUUUCAUGAAUGGGAUUCCUUCUCCUGCGCCGGUGCUGUCUUCUCCAAUGGGAAAUGGAGGCAAGCAUCUGCCCUGUUCCAUGGUGGCAGCCAUGGAAUGAUGGGAUUUCUUUGAUGGUCAUAAAGGAGAUCAAAACCAACGGUUGGCAAUCUCUGCAGGGAUGAUGAACCAGGCUUGUAAUAUCUGUUGCUGAUUUCUUUGGAAGACAUAACGGCAGGCUUCAUGGGGCACGAUGGAUUUCAGAUGGUUGCUUCAGCCAUGUCUCAAGUUGAUGGACCUCAAGUUUCUGGGUGCAGUGCCACGAGUCUUGGUCAGCCCAAGAGUAAGCGCAGGACUGGUGACAAGGCAAGAGGGGAGAAGAAGGCACUCAAAGUUAAGAUUAACCUUGCCAGCCCGGCCAAAAAAAUUAAGAAAAGUAGCAAAAAGAAGGGCAAAAAGGGCACUGUUGCUGGCAGGAUAGGGAGAAAAUGCACUCUCUCAAGAGAUUCUAAAGGGCGCUUUCUUCCAAGAGAGAGUAAGGGGGGAGACAUCGGAGGAAAUGCUACAGAGAGUGAAGUUGAUUAUGACCGCUUCAUGAACUUUCAGGCACCUGACUUCGCUACCAUCUUAAGUAUUUUGAAAGGCUGGAAAGGCAUGAAGCAAUGUAACAAGAUCAGGCGCCUCAAGGAUCCUGACUUCGUCCCUCUCAUGAACGUCAUGAGCAACACUGGAUAUGUGACCGAGGAUGAUGGUCACUAUGAUGUGCUGAAAGUCUUGAUGCAUGCAGAUGGCUGGUCUGCAUAGUGAUUCAAGCUCUCAAAUCAAAACAUUCAGGCCUAUGGCCUUGUUGCUAGAACAGUGGUUUCUUCUUUCACCUUUAAAACUUGAUGGACUUUGUUCCAUUUAUCUUAGAAAUUUUGUUGCCCUUGAGUCCGGUGGAUAUGUACUGGAGUAUGCUAUACUGGGUGAUUUAAUGGUGAUAAUGUUAAAUCUUGAUACUAGUUCUACCUUUUUGUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

239

NEP:

87.23%

LE_num:

5

LEP:

1.82%

ME_num:

20

MEP:

7.3%

HE_num:

10

HEP:

3.65%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.91

Avg Expression:

79.63


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph-8.707696955530220.00827983229602101
2BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late10.90618242366472.16145403361057e-07
3BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly10.26306983962522.27682619246278e-08