Source:
XM_015764839.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
688
Sequence:
UUGCACUGCUUCAUGCCUUUC
Length:
21
PHAS Gene Name:
LOC4352810
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC4352810, transcript variant X1
PHAS Transcript Sequence:
UUUUAUUCUCCCCUGCGCCGCCGCCGCCGCCGCCGCCUCAAUCGGGCGAAGCCGCCCUCGCCGCCGUCGCGGCGGCGGCGGCGAGGGCGAGCUCCUGCGAGAGAUCCUCCGCCGCCUCAUGCCUCGCGCGCGCGCUCCCGCUCCCGCUCUCGCCUGCAGUAUUUGUUCCAUUGCCGCGCACCACUUUCCGGUGGGCGGCGGGCAAUGCUAGGGGUUAAGAGACCUUCUCUCCCCGAGAUGGAGGCGCCGGGCGGCGCGGCGGGGGACGCGGAGGAGGAAGUUGAUGCCCGGAUCCGCUGGGUUCCAUGGUGGCUGCUAUGGAAUGGUGGAAUUGCUUGGAUGGCCACGAAGGGGAUCGACGCCAAUUGUUUGGCGACCUCUACGAUAGAAUCGCGUCGAGUCGGGGUGUUCUUUCCUGUUAUUACUAGAAGUAGUUGAAUUUCGUGAUUGAACACACAAGGAAGCUUGAUAUCGCGUCGGGGGUGUUCUUUCCUGUUAUUACUAGAUGUAGUUGGGUUUCGUGAUUGAACACCUAAGGAAAGGAAGCUUGAUAAAUGGAAGAUAGUCCAGCAAGUUUUGAAGAUGAUAGAAAAUUUGAGCGCGUCGUAGUAACUGUCGUCCACGAUCACGUCCAGUGUUGUUCAUGGCAUGGGGGAUGGAGUCAGGAUCCUUGAGGCGUCUGCUCCUGUUGCACUGCUUCAUGCCUUUCCUGCCUUCUAGGAUGCUUAAGAUGGUUGCGAAGUCAGGUGCUUGGGAGUUCAUGAAGCGGUCAUAAUCAAUUUCGCUCUCUGUAGUACUUUCUCUGGUGUCUUCCCCGUUGCUUCCUUUUGGAAGAAAAGCGUCCUUUAGAAUCUCUUGAGAGAGUGCACUUUCUCCCUCUCCUGCCAUCAGUAGUGCCUUUAUUUUCGCUUGGUUUCCGCAUCAUCAGGUGGCACUUAUAGAAAUUAUUUUAUGGAGGAAAAAGCAUUGUAUGGCAUGAUAGAAAUAUCCUUAUGGAUAAAACUAGGACACUUGCAAGUGUUCAAUGGGAGUCACCUUACCUUUUUUGCCUACCUGUCUGCAUUUCAUGAAUGGGAUUCCUUCUCCUGCGCCGGUGCUGUCUUCUCCAAUGGGAAAUGGAGGCAAGCAUCUGCCCUGUUCCAUGGUGGCAGCCAUGGAAUGAUGGGAUUUCUUUGAUGGUCAUAAAGGAGAUCAAAACCAACGGUUGGCAAUCUCUGCAGGGAUGAUGAACCAGGCUUGUAAUAUCUGUUGCUGAUUUCUUUGGAAGACAUAACGGCAGGCUUCAUGGGGCACGAUGGAUUUCAGAUGGUUGCUUCAGCCAUGUCUCAAGAUUCAGUUGAUGGACCUCAAGUUUCUGGGUGCAGUGCCACGAGUCUUGGUCAGCCCAAGAGUAAGCGCAGGACUGGUGACAAGGCAAGAGGGGAGAAGAAGGCACUCAAAGUUAAGAUUAACCUUGCCAGCCCGGCCAAAAAAAUUAAGUGCCACCUGAUGAUGCAGAAAAGUAGCAAAAAGAAGGGCAAAAAGGGCACUGUUGCUGGCAGGAUAGGGAGAAAAUGCACUCUCUCAAGAGAUUCUAAAGGGCGCUUUCUUCCAAGAGAGAGUAAGGGGGGAGACAUCGGAGGAAAUGCUACAGAGAGUGAAGUUGAUUAUGACCGCUUCAUGAACUUUCAGGCACCUGACUUCGCUACCAUCUUAAGUAUUUUGAAAGGCUGGAAAGGCAUGAAGCAAUGUAACAAGAUCAGGCGCCUCAAGGAUCCUGACUUCGUCCCUCUCAUGAACGUCAUGAGCAACACUGGAUAUGUGACCGAGGAUGAUGGUCACUAUGAUGUGCUGAAAGUCUUGAUGCAUGCAGAUGGCUGGUCUGCAUAGUGAUUCAAGCUCUCAAAUCAAAACAUUCAGGCCUAUGGCCUUGUUGCUAGAACAGUGGUUUCUUCUUUCACCUUUAAAACUUGAUGGACUUUGUUCCAUUUAUCUUAGAAAUUUUGUUGCCCUUGAGUCCGGUGGAUAUGUACUGGAGUAUGCUAUACUGGGUGAUUUAAUGGUGAUAAUGUUAAAUCUUGAUACUAGUUCUACCUUUUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
36.13%
HE_num:
HEP:
62.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.78
Avg Expression:
783.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -1.63193445474852 | 0.000201599468593341 |