Source:
XR_003239861.1
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
526
Sequence:
UAACCGAUGUCGAUGCUCCA
Length:
20
PHAS Gene Name:
LOC112937346
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC112937346
PHAS Transcript Sequence:
CCAUUGAUUUAUGAGUUAUACUACCAUUUGAAAAACUUACAAACUCUAACAAUUCUACUACACGUAGUAGAUGCGUGGUAGUAAUAGUAUAAAUGGAUAUGAUCCAUUGAAUUAGAAAAAGGAAACGUUUUAAAUUAGUUCCAGUGUAAAACACCUCCCAUAACGUAUGUUAGUGGUAGGUGCUGCAUUGAAACAGAAAUGUAACAUUGCUAUGGUCAAUGGUACCUACAGCUCUAUAUAUACAUGGAAGAGUAGACUGUCGAUGAAGGAGCUGCAGCGAUGCUCAAGCUAAGAGAUGAUAGAUGGACAUUUCUUGUUGCUUUGGUCAGAAUAGGAUGCAUCAGGAGUUGCCAUGCCACAAGAAUCAUGUUCAGAUCUGCGAGCAAGAGGUAGAGGACAAAUGCUUGAGCAUAGCGGUUCAUCAGAAUUAUGAACAGUUCUCAUUCAGAAAGGGAAUGUUGGAGCUAGUAUUCUCUCUGCGGUGCAGCCAUGCAAAUCCUCUUGUUUAUAAAAGCAGAUUGACUGAUAACCGAUGUCGAUGCUCCAUGUAGAGUGGUUUAUGGUCCAAGGGGUUGGGACAGUGGCAGCCAUGUGAUGAAUUCACAAAGACCACUACUGUUCCACCGUACAACUCGAAGAACUCAUGGUGCUGCGGUGAAGCUCCUUGUGUCUGCGGAAGUGACGAAUGCACGAAGUAGAUCAUUGUGGUAAAGUUCACAUGUGAAUAAUUGUUGGAAUUCAGUUUAAUUUGGUCUAGCAGAUAAAGGGAUUUGUGCAAAAUCAAAGUGUUUUUUAUUAUUAUUCUAUCAUGAACAAUUGGCAUCUGUGAUUAUUGGUUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
231
NEP:
84.31%
LE_num:
LEP:
1.09%
ME_num:
MEP:
1.82%
HE_num:
HEP:
12.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.97
Avg Expression:
540.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.38286960638396 | 0.0212130670046212 |