Source:
XR_003239906.1
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
2967
Sequence:
CCUGUUGAAAUUGUCAGGC
Length:
19
PHAS Gene Name:
LOC112937369
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC112937369
PHAS Transcript Sequence:
CCGCUUACCAUGGGUGUGGUAGGCCUAGGAGGCACCGGGAAUUCUUAUCUCCCGUUCUUCUCUCAAAUCACAGUGGACACGAUUGCUAUUUUGGUUCUGAUGCUAGCAACCAGUGUCCGGCUCCAAAACUAAUUCUUUUUUACAUCUGAUCUUCAAGAGGACUUAUUGGGUGCUUCAAUAGACUUUGUUGCUUAAGAAAGAGGAUGACCACAAAUUGAAAGAAUGUUGCAAGAUUUUGGAGGCAAGGGUCAUGGAGUUGUAUGCAAAAUAUGGGUGGAACCUUAAAAGAAGAUUGUUGUAGUCUUGUGUUUCUCUUUUCUCUUUUAAGUGUUGUCACUUUGGUACUCUUUUAUUGUAAGGAAUUCGGGUCUAAGUACUCUUGUAUGACUUUAGGCUGUAUACAUCCAUUGUGGAUGUAGAGGCCGGAUUUUAAUCCAUUUUCUAAAAAAAAAGAGAUGUAACAGUCUUCCAGAUCAGCAGAUCCUCUAUUGAAGAACACAAUACACUGUACUUAUUUUAGACGGAGUGAGAACUUGAUGGCUUGCAUUGUUGAAAGCCUGACACCCAAAGAGAACAAAACAAUUCAAUGCACUUCACUUGAUUGCUUUAUGUCAUGACUCAUUCACAUCAUAUAUAUCCAUUCUAGGCUAUCCAUAUGUAAACCCAUGAGUGAAUGAAGGAGCACAAUAAAUGCUAUAGGCUAUAGGAUAGUGAUGAAGAUGAACAUUGGUUCAGUCCUUCAGGGAGACAAAGGCAACUGCACCCCAGCAGCUUGCAAUGGUUGGCCUAGGAGGCAUCAGAAAUCCUUUGAAAUCUUUGAAGUGCGUUGGAAUAGCAGAAAGUAAGCGUGAGACAGUCCAUAAAACCGUGGAGUCAAUGGUAGCGGAGGCAGAGAGGAAGCCAUCGAGCUCGGAGCUUGUCAAUGGCAGCCUCGUGCAACAAGGAUGGAAGCACUGCCAAUGAUCCACUCGGACGCCAUGGCUUGGUGCAACUGCUCUACUCAGUUGGAUAUCUACGUCCUGCUUCUUCAGCUCAAAUCCUCUUCCGAAUAUCUUCUCUUCCUGAAUCCUGAAUGUUGUACGCCAACCUGCUAGACAAUUCAGUCACUGAACUAAUAAAGUUUGCAUGUAGUGAACAAAUAACUGCCCGGUAUCGCAUUGUAUAAAGUAUGCUUAUGGGAUCAUCUGCGUCUUCCCUGGUACACAGCAAGAUGUUCACUCAAUUGUUCUUCUAAGGCCACCUUAUUUUCUGAAUUUUCUGAAAUAAACCAUGCCAUUGCUGCCAGUCUAAAAAAUCACACCCUGCUAUUAUCAUUUGGACUGAAACAAGUCUUUGAAAGUUGACCCCCGAUGCCAAAUUCAGAUUUCAGACAAAAUUAACUCAUAGAUUUACCCAGUAAAUACCAACAACAUGAAAGGACUCUAACUUGCCAGAUCCUAGCCGAUUGUUGGUAGUGGAGGCCACUGCUACUGAUAGCAGCUAGCUAAAAUGAAACUAAUUGUUCAGACCAUGUCCAACUGAUUGUUCUAAAUUGAAUGGCAAUUGGCGCCAGCGUUUUAAUCUCUGACCCCCUUGGCUGCUAUCUGCGGAUGUUCAGGCCAUGUUCAAUUUCUGCAAUGCCACCAGCAGCAAUACAUGUUGUACGACAACAAUGCAGUGAAACAACAAUGCAACUUUCGUUCAGUUGUAAGCCUUGCCAUUGCGUUGUUGCUGAUUAGAAUUGCUGAAGAAAUUAGGGACCUGGGUACCUAUUUGACCCACAUUAAGUUGUAGCUUGCUAGUUCUCCAUUGAACACAAGAAUGACUGCAUGUACUGAACUAUAAUUGCUUGGAAUUAGAAAUUAGUGGUACAUCUGAUCACAAACUAAAACUCUCAUUGACUUGGUUGGAUGGCUGUACUAGGCCUAAGGCAACAUUGUCUUAGCAUCUGAAUCUUCUCCAAGACAUCAGCAGCAUGUUCACUUCAAUUUUAUUCAGGCCAUCUUGUUUCUGAAUUUGCCAAACAGAUCACACCAUAUUCAGAUUUCAGGCCAAACCACAUAAAUUUUGCCAGUUAAUAUCAAAUAAAAACGAAAGCACAGUUGCAAAUUUUUGUUCAUUAACUGUUGUCCUUAAGACAGCCAAUUUUGCAUAGCUUGCAAAGAAAUUGCUCUGCCAUUAAAGGAUUCUAAAUUUAGCACAGUUUGGUUGUGCUGAUCGUUUCAACAGAUUAGAAGGAGUAAGAAGGUAAAUGCAUAACUGAACAUACUGAUGUUCCGAAAGCAAACAGCAGUUUUAAGCUACGAAGAAUUUAUACAUCAGCCGGGAAGAACCAAGUCAGAAAGUGGCGCUUGUGCCGCAGCUCUUUCAUCACAGACUCAGGCAGCAAUGGUUUGAUUACCCCAUCUCACAUGUUGUACAGUCCAGAAUCAUGGAGAUGAUCGGCAUGUGCACAGAAGCAAAUGCUAGCUGGAUAUUGUCAUAUACCCUAUGCAUGAAGGAGAUGCGCAGUCUUCUUGAGCUCCGAGUUGGCUAGCAGCCACAGAUUUUGAUCAAUCCACGCCGCCUUUUUGUGAUCGAAUCAACCAACUAAUAAUGAACUUAUGGAUUCCAGUAAUUGUUUGUUUCUGAAAUGAUGUAACAAAAUUCUGCAAUUUAAAAUCAUGAGUGGUUCGCGUGGCCACUGACUUUCUACUUUGAAUUGAAGAAUUGAAGUAACAGAAAUUUGUCAUACAUUUUCAGAAACAACCACACUCCGUUCUGUACCACUAGACUGCGAUGUGCAUCCAUUAGUAAUGUACGUAGUGGUACACCCUUUUGCUCUAUAAAUAUGAGAUGCAGUUGCACAAGCUGAGAAAGGACUGAAGGAUACAUAUUCAAUUGACAUAACAAUGGUGCAACCAAUGUUUCAUGGAACAGAAGCCACUCCAGCCAUGUAGAUGGUGGCUAUGGGUGUUGGGCUAGGAGGCAUCAGGAGCUUGCAUGUCACCUGUUGAAAUUGUCAGGCAGGCAUCACCAAGAACCUCUCAACAGUGACCAGACAUGCCACCACGACCCUCCCUUGGGCAACUGGUAUAGUACAACCAUGGUGGCUGGUCGACAAAAUUUGUUUCUUGAUUUUGCUUUCUACUACUAAUUCGUGUUUCAACAUGGUAUAAAUAUUUGUUGUUCUUUUCGAUUCAGUUACUAAGAACACGUAUAGGUGUUAUAGGAGUAUUUCACUCCCCAUAAAAAAACAUGUAAGUAGUUAUGAACUUGAUAUGAGCUACUCCUAAUAAUUAUGAUCGAAAUUGCAAACCUCGGUACCGGUGUUAAUUAUUCUUUGCCAAGCUAUAUGUUCGAAAUUAACUCGUCAAGUCAAGUGGUAUAGCUGGCAUGGUCGAUAACUCGCUGCAUUGAGUUGAACAAUUGAAGAGACAAACUGAUCUGACCUACCAACAAAAAUCAAGCUAUGGGGUUAAAAUUUGACACGGAUAUUUCACAUAUAUUCUGAAUUGUCCAUCCCACAUCUUAAAUUGCUGCCAUCAGACAAUGCAUCUAUAUAUAUGAACCUAUCCCUUCUGCUCCACAUACACAAUACGAGACGAAGCCACAAAGGAAAAUAGCAUGAUGAGAAAGGCAACUCCUUGCAGUUCUUCGCCGGGAAUUUCACAAGUAUUCUACAUGACAUAUCGUCUUCAAGAUUUUGAAAGUGGCGUUUGGCCUAGGAGGCAUCAGGACUUCUCAUGUCAGAGGAUGUAGUCGUGUAGGUGCUGACUGCCAAGCCAGUGCCACCAAGCGGCAAACCGCGGCGAGCGAAAGCAUUCGGCGGCACAGUCGCUGGAGCCCAGCAUGUGGUGACUGCUCUGGAAUUCAGUAAUACCGGCUGGAUAGAUUUUCUUUAUCUCUAUAUCAUGCAAGAUGCCACAUGUAUAGCUGAGGGAUGACACAAUAUUUUCGCAAAUGCGAACCUGUAUGUAAUUUGUGGCGCACUGAAGUGAACUGACACAAAAAGAGAAGAGGCAGUUCACUGCCCUUCAGUAUCAAAUGAUUAGGGAGCUGGAGGAGGCCGCUGCACCCAGCAGCUUGCAAUGGUUGGCCUAGGCGGCCUAGGCAGCAUCAUAAGAGGAAUUUUACAAUCCUUUAAAAGGUAGCUUGAGGUACCAAAAUUUUACACGAGAAUUUUUAGUGCCUUAAGAUACUUAGUAUCUAGAGGUACCAAAUUUUGGUAUCUGGAGGAGAAAAUAUGGUACCUCUAGAUAUCUUCUCAAGGAUGGUAAAAUUACCCGCAUCAUAAACAUUUGACAAAGAUAAGAUGAUGUUGCCUCAUCAUUUCGCCUUAGUUUCAGUCAAAAUCUGGAUUAAAUUGAUUAAACAAGGUGGAUGUGGAUGUGUGAUGUUCAUUAACCCUUGCAUCCUGCAGUGGCCGCAAAUCGCAGAAAACAAGUGCGAGAUAAUCCCUGUCGACUUGAAUCCGUCGAGUCAAUAGAGAUGGAGCCAUAUGGAGAAAGCCGUCGAGGUCGGAGCAUGUCAAUGGCAGCCUCACGCAACUGCCAAUGAACAAAGGGGGUCUCACUAGUACAGAACAAGCCAUUGGUGUCAGUCGGAACCAGCCUUUUGUGCCGGCAUUCUAUGGCUCAUCAGUGCUGGAUAAAAAACCAUCACUCUUAGGAUCUCAUCAGUAAAAAAAAAGGAAGCCACUCGAUCCACAUCAAUCCAGAAUCAAACCCAAAUUACACAUCAAUUUUUGUACACAGACAUUUAUACACAACAAUUUGAACACAACCCCUUGUCAAUAUUGCAGACACACAUCUAACAGCAACAAACUUUUUUCCAAUCUAGAGAUGACACCAAAAAUUUGUUCACCUGAACUUGACGACUAACCUCUUUGAAGAUGGUGGACUGGAUCUGGAUCUGCCGCUGCAGCUCGGCCGUGUCCGUGGACUAGAUCUGCAUCGGCGCGGUCUAGGACAACGAGCCAAUGCCAACACCCCCACUAUCAUCAAGGGGGAGGAGGCCCAUGGUCGAGGGGAAGGAUGCUCUUCUUAAAUCCUGAUCGACUCACCAUUAUUUUUCUCUUCGUGGAUGAUGAAUGUAUAAAAAUGGAGUAAUAGACCUGUAAAUAAUUAUGAUUUACAAACUCAUGGAUGACAUUUGCCUUUUUUUAAUGAGUUUGGAGGUCAAUGCUGUACGUAUACUAACCUGUUGGAAAUUUUGAUUCUCGAUGUAAUAUAACGACAAUUAAUGCAACUCCCAUUCAGUUUGAACUGAUGAACAAGUUCAUUUUUUUAGAGAAGGGUAUUUUUACCCAGCCUCUACAUCCAACCGGAUACAUGCAGCCUUUUUAAAUUAGGAACUUAGCCUAUCGAACAGGGAACUUAGCUCUCAAAUAACCCAAUUGAAAUUCGCUCCUUUGGAGAAUUGAACUCAGGAUCUUGGGGUGCUACUCAGGUUACUGCAACCACUAGGCUACAUGCCCUUUUACUCAAUAAGUUCAUGACUUGAACCUAUAUAUAGCUAACAUUCAGUUGUAGCCCGCUUGUUGCGCAAAUGUCCAAUUGAACACGAUAAUGAUUUCAUGUAUUGAACUAGCUUAUAACUGCACAUUUGACUGAUGUCUGCUCCAUGUUCGUUCGUUCUUAUCAUUAUUAGAUUAGAAGCAACAGGCCAGUUUCUGUCAUGUCCAACCACUGCAGAUGCUACCAGCAGCAAAGCUUUGCUUGUAUCAUGUGCCCUCUACUGUGCAACGAAGGCAUGAACACUUAUCAGUUACCAAUGUUUGGGCUAGGAGGCAUCGGAAACCCUCUGAUUUCUUCAAUGUGGCUGCAAAUCGUGGAAAACAAGCGAGUGGGAAUCCCUGUUGAGUUGGAUCCCCUGAGUCGAUGGCUGUGGAGCCAGGAAGGAAGCCAUCGAGCACCAUGAUCAAUGAUAGUGGCUGCUUGCAGCAGGGAUGACAUUGCCAGGAAUAACUGGGCGGCCUUGUGUCUUGCCGCAGCUGCUCUACCCAGCUCACCAUUUUCGUGUUGCAUUGCCCGAUUAGAGCACAAUAGACUGGAUGCAAUUAAUUGAUAAUUGCGUGAAAUUAAUGUAUAUCUGAUAACAAACUUAAAAUGUAUCUGAUCACAAACUUAAAACUUGAGUGACUUGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
257
NEP:
93.8%
LE_num:
LEP:
5.11%
ME_num:
MEP:
1.09%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.99
Avg Expression:
0.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
Tip: Osa-phasi12g1435 is not a differential expression ncRNA. |