Osa-phasi12g0824


Function Link


Basic Info

Source:

XR_003239945.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

960

Sequence:

CACCUGCAACGUCGAGUUCGG

Length:

21

PHAS Gene Name:

LOC112937393

Chr:

Chr12

PHAS Transcript Annotation:

uncharacterized LOC112937393

PHAS Transcript Sequence:

UGGUAAUUAAUUAAGACCUUCAAUAUACUGCUGUGAGUAUUUAAAAAUACUAUUAUGUUCAGUAACAAAACUAAACGGGAAUACCAUGCUGUUACAUGAAUAAUAGUACUCUUUCAUAACAUAGUUUGGAAGGCAUAUCAGUUGCAGAUUAGAGGAUGGCCGAAUAACCACUUUUGUCUACUGUGUGCUACUAUAAUGUGAUAAUAGGCGCCAUCUCUUCAAGGAAUGCACUCAUGUAGGUCGAACUCACUGGUUAGCCAAGACAACCACAUACUGCAGAAACAACAAUGUGUGCCGGUUGGAAAACCCUCAUGGGUGCCAGAUUUCCUAAUCUGCAUCUAGCAGACAGCCAAUGCAUUGCAAAACAAAAGUCGGAUCAAUGCAUUUGCUUGAUAAUAGCCAAUGCAUUGAGUAGCUCCUCAUCCCACAUCCGCAUAUCACCAUCCAUCCAUCCCACAUCCAUCUAGAGCAAAAUCGAAGAAAUUGAACCACAAAUUUUUCGCACAAAAAUUCAUCACUCCAAUGAAAAUUCAUUACAGGAAAUAUUUGCAUGCAUCAAACAUAAAGAACAAGAUGAAGAAAUCAGAAAAAAAAUAGAAGUUAGUCCACAUGCCCUGGUAAUUCAGCCACCAUCGUGGAGAAACCUCUUUGCAUGCCGUGCUGUGCCAAAGAGGGGGUGGCGCCAAAAAAGGAGGCGCCGGAACUGGCCACCCCCGAGCGGCGGUGGGAAGGGGCCGAAAGGAGGGGUUGCACUGGUGGGAAGAGGCGGAGAGGAGGUGCGACGCUGGUGGGGGGUAGCGCCGUAUCCAGCCGCUCCAGAGCACCGGUCGGGGGGAAUGGCACCAGAUCCGGUAGCCCCCAAGCACCGGGUGGGAAGGGUGGCACUGGAUCCGGCCACCACCGAGCAUCGUUGCGGAGGGGCGGCACCAGAUUCGGCUGCCGAACUCGACGUUGCAGGUGCACCUGCAACGUCGAGUUCGGUGUGUUAGAGUGAAACCAUACAAGUUUUAUGUUGGCUACCUCAACACAUAUUCUUGAGUAGGCUUGGUUUGCCUACCUAUAGUGCACCCCUUUGGUUCCUGGUGUUUCCCAGUCCUAUAUGUGUAGGUCUACAUGCCACAUCCUAGCGAAGCACCAAACCGGUGGCCUCCAUUUGCUAAGGCCUCAAUACAAAAUCUUGAAUUUGCCUCUUCGCGAUGCUCAUUUUGACACGGCUCUGUUUUAUUUGUAACCAUCCAAGUGGCAGCAAUGAUGUAGCAUGCCAAUUGUGUUGUAUAUAUGGAGUAUCUGUCAUAGCCCAUGUGAGCAGAUACGCAGAGCUUAACCAUAUUUAAGUUAGAUGUAUCAUCUCUGGCUCUCUGCAGAAAGAAAAAGUUGGAUGUGUCAUCUGGAUGAACCUAUUAGAAAUGACUUUAGUUAUAAUCUGUUUUAUUUAUGUUCGUGCAAAAACAUUUGUUCAACUAGCGUAGCUCUGCAACUUGUGAAUUAAUAAGCAACAUUAAAUCUGAUCGAGCUAUUAAUAUUGUACGACCUAACCUAACGGGAAAAAUAAUCUUAGAUGGUGGAAAUGAAAAUAUAGUGCAAUGCUUUUUAUUUCCUUAUACGACGAAAUACAUGUAACAUGUUUGGCCGUUUGGAAAAAUGCAACCAGAAAAUAUAGACUUGAGACAGCGACAGAGAAGAAACUAAUUAAACAGGGCAAUCACAAAUUUGCAAAAAACUAAACAUGGACUAAACAACGCUGCAGUAGUUCACAUUUCUACCAUAACUGUACUUCCAUUCCAUUAUGCUUACUCCCCCAAGUUGUGCGACACUUCGAUGAAGCGUACCGUAUAUCAUCCAGUUUAAUUUCAAUAACACGCACCGUUGAUACUUUUUGAAGGUUAGAUGGUUACGUAAGUGGAUUUGCCAUCCUUCGCUUCACGAUGCUUCCUAAGCCUACGUAUACAUGUGCCUACACCACACAAUUGUGAAGUAGUAAACCUCUCAUUGGUAUGUACACUUUUUAUGGACGAGCUGUAGGUUCCCUUAGUCUAGUUCGAUUAUCUCUUUAUGCUUAUCUUUUAUAUCCAAAGGAGAUAGUACAUAUGUACAACAGAAAAAAAGUGUUGCACCAUUUGUUUUAAUUAAGUAUAAAUAUGUGGAUCCGCAUUUGGUUUCCAUUUGUUAUAAAUUUUAAAAUUAAGUCAAUAAAGAUAAACGGUGCCCAUACUAGAUAGGUCGCAAUAGGUUACAAUGGGCAUCUAUGCCAUUUCAGAUGGAUGAGAACAGGACUACAAUAUUAUGUCGAAUAUAUUAAAUUGGCCUAAACAUGUUACGAAGCACAUGUAGCCUAUAUAGUUGGCUCGCCAGAUGUCAGGUUUCGCCAAGUCGGCUUCAUCCAUAGCGUGGCAUCUCUUUGGGCUCCCUCUGCCAUGCCGAGAUUCACUCCAUGGUGUGACCACCUUCCCAUAAUUGUGUGCCACCGUCGCGUUCUUCAUAUCGCCAAUGGCACCCGCCCAACGGGAUCCUAGAAACAGCUAAUCACCCCUUCAACUCCAAUGAAUGGGCACAUGUAGCCGAAGUAAGGAAUCAGCUAGCUUAUCAGUUAUAUAUCACCUCAGAUUCAGGCAAUUCAAUCAAGAUAUAGGGCCUGUUGGCGGAGCAUCUCCCAGAAUCAGAAGCUCCCCCAAUUAAAAGCUUCAAACAAGAUGGCUUUCCUCGACAGCAGUGCAAUUCAUAGACGUGAUGGCCUUGUCGAAACAGAACCAUCACAGUUCGCAAAGACAGGAUAUUUCAGAAAAAAAUGAUAUUGUGUGGUACAUGCUGAAAUAUACUCUUAUCUAUCGCACCUUUUGAUCCUAUGACUCUAUGAGUCUAAGUGACCAGUCAACCAACCCCUACACAGCCUUGGCAUGACAGUGGGCAUCACUCUAUAUUUUUAAGAUCUUCGCCACGCUGGUAGUCAGGUUUGGUGAUUAGAACAUCUGCUUGCUGGACUGGGAUUUGGCUAGCACAAAGGUCCCAUUAGUUGUGUUGUAGUGAAAAAAAUGGAGGCUAUAUAUCAUUAGGUUUCAAUAACACUCUGUGGAUGAAAUUGCUAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

227

NEP:

82.85%

LE_num:

1

LEP:

0.36%

ME_num:

6

MEP:

2.19%

HE_num:

40

HEP:

14.6%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.96

Avg Expression:

1649.87


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17-23.85948720739861.00976024436503e-05
2PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17-22.62313570292625.70486376948768e-05