Source:
XR_003239945.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
960
Sequence:
CACCUGCAACGUCGAGUUCGG
Length:
21
PHAS Gene Name:
LOC112937393
Chr:
Chr12
PHAS Transcript Annotation:
uncharacterized LOC112937393
PHAS Transcript Sequence:
UGGUAAUUAAUUAAGACCUUCAAUAUACUGCUGUGAGUAUUUAAAAAUACUAUUAUGUUCAGUAACAAAACUAAACGGGAAUACCAUGCUGUUACAUGAAUAAUAGUACUCUUUCAUAACAUAGUUUGGAAGGCAUAUCAGUUGCAGAUUAGAGGAUGGCCGAAUAACCACUUUUGUCUACUGUGUGCUACUAUAAUGUGAUAAUAGGCGCCAUCUCUUCAAGGAAUGCACUCAUGUAGGUCGAACUCACUGGUUAGCCAAGACAACCACAUACUGCAGAAACAACAAUGUGUGCCGGUUGGAAAACCCUCAUGGGUGCCAGAUUUCCUAAUCUGCAUCUAGCAGACAGCCAAUGCAUUGCAAAACAAAAGUCGGAUCAAUGCAUUUGCUUGAUAAUAGCCAAUGCAUUGAGUAGCUCCUCAUCCCACAUCCGCAUAUCACCAUCCAUCCAUCCCACAUCCAUCUAGAGCAAAAUCGAAGAAAUUGAACCACAAAUUUUUCGCACAAAAAUUCAUCACUCCAAUGAAAAUUCAUUACAGGAAAUAUUUGCAUGCAUCAAACAUAAAGAACAAGAUGAAGAAAUCAGAAAAAAAAUAGAAGUUAGUCCACAUGCCCUGGUAAUUCAGCCACCAUCGUGGAGAAACCUCUUUGCAUGCCGUGCUGUGCCAAAGAGGGGGUGGCGCCAAAAAAGGAGGCGCCGGAACUGGCCACCCCCGAGCGGCGGUGGGAAGGGGCCGAAAGGAGGGGUUGCACUGGUGGGAAGAGGCGGAGAGGAGGUGCGACGCUGGUGGGGGGUAGCGCCGUAUCCAGCCGCUCCAGAGCACCGGUCGGGGGGAAUGGCACCAGAUCCGGUAGCCCCCAAGCACCGGGUGGGAAGGGUGGCACUGGAUCCGGCCACCACCGAGCAUCGUUGCGGAGGGGCGGCACCAGAUUCGGCUGCCGAACUCGACGUUGCAGGUGCACCUGCAACGUCGAGUUCGGUGUGUUAGAGUGAAACCAUACAAGUUUUAUGUUGGCUACCUCAACACAUAUUCUUGAGUAGGCUUGGUUUGCCUACCUAUAGUGCACCCCUUUGGUUCCUGGUGUUUCCCAGUCCUAUAUGUGUAGGUCUACAUGCCACAUCCUAGCGAAGCACCAAACCGGUGGCCUCCAUUUGCUAAGGCCUCAAUACAAAAUCUUGAAUUUGCCUCUUCGCGAUGCUCAUUUUGACACGGCUCUGUUUUAUUUGUAACCAUCCAAGUGGCAGCAAUGAUGUAGCAUGCCAAUUGUGUUGUAUAUAUGGAGUAUCUGUCAUAGCCCAUGUGAGCAGAUACGCAGAGCUUAACCAUAUUUAAGUUAGAUGUAUCAUCUCUGGCUCUCUGCAGAAAGAAAAAGUUGGAUGUGUCAUCUGGAUGAACCUAUUAGAAAUGACUUUAGUUAUAAUCUGUUUUAUUUAUGUUCGUGCAAAAACAUUUGUUCAACUAGCGUAGCUCUGCAACUUGUGAAUUAAUAAGCAACAUUAAAUCUGAUCGAGCUAUUAAUAUUGUACGACCUAACCUAACGGGAAAAAUAAUCUUAGAUGGUGGAAAUGAAAAUAUAGUGCAAUGCUUUUUAUUUCCUUAUACGACGAAAUACAUGUAACAUGUUUGGCCGUUUGGAAAAAUGCAACCAGAAAAUAUAGACUUGAGACAGCGACAGAGAAGAAACUAAUUAAACAGGGCAAUCACAAAUUUGCAAAAAACUAAACAUGGACUAAACAACGCUGCAGUAGUUCACAUUUCUACCAUAACUGUACUUCCAUUCCAUUAUGCUUACUCCCCCAAGUUGUGCGACACUUCGAUGAAGCGUACCGUAUAUCAUCCAGUUUAAUUUCAAUAACACGCACCGUUGAUACUUUUUGAAGGUUAGAUGGUUACGUAAGUGGAUUUGCCAUCCUUCGCUUCACGAUGCUUCCUAAGCCUACGUAUACAUGUGCCUACACCACACAAUUGUGAAGUAGUAAACCUCUCAUUGGUAUGUACACUUUUUAUGGACGAGCUGUAGGUUCCCUUAGUCUAGUUCGAUUAUCUCUUUAUGCUUAUCUUUUAUAUCCAAAGGAGAUAGUACAUAUGUACAACAGAAAAAAAGUGUUGCACCAUUUGUUUUAAUUAAGUAUAAAUAUGUGGAUCCGCAUUUGGUUUCCAUUUGUUAUAAAUUUUAAAAUUAAGUCAAUAAAGAUAAACGGUGCCCAUACUAGAUAGGUCGCAAUAGGUUACAAUGGGCAUCUAUGCCAUUUCAGAUGGAUGAGAACAGGACUACAAUAUUAUGUCGAAUAUAUUAAAUUGGCCUAAACAUGUUACGAAGCACAUGUAGCCUAUAUAGUUGGCUCGCCAGAUGUCAGGUUUCGCCAAGUCGGCUUCAUCCAUAGCGUGGCAUCUCUUUGGGCUCCCUCUGCCAUGCCGAGAUUCACUCCAUGGUGUGACCACCUUCCCAUAAUUGUGUGCCACCGUCGCGUUCUUCAUAUCGCCAAUGGCACCCGCCCAACGGGAUCCUAGAAACAGCUAAUCACCCCUUCAACUCCAAUGAAUGGGCACAUGUAGCCGAAGUAAGGAAUCAGCUAGCUUAUCAGUUAUAUAUCACCUCAGAUUCAGGCAAUUCAAUCAAGAUAUAGGGCCUGUUGGCGGAGCAUCUCCCAGAAUCAGAAGCUCCCCCAAUUAAAAGCUUCAAACAAGAUGGCUUUCCUCGACAGCAGUGCAAUUCAUAGACGUGAUGGCCUUGUCGAAACAGAACCAUCACAGUUCGCAAAGACAGGAUAUUUCAGAAAAAAAUGAUAUUGUGUGGUACAUGCUGAAAUAUACUCUUAUCUAUCGCACCUUUUGAUCCUAUGACUCUAUGAGUCUAAGUGACCAGUCAACCAACCCCUACACAGCCUUGGCAUGACAGUGGGCAUCACUCUAUAUUUUUAAGAUCUUCGCCACGCUGGUAGUCAGGUUUGGUGAUUAGAACAUCUGCUUGCUGGACUGGGAUUUGGCUAGCACAAAGGUCCCAUUAGUUGUGUUGUAGUGAAAAAAAUGGAGGCUAUAUAUCAUUAGGUUUCAAUAACACUCUGUGGAUGAAAUUGCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
227
NEP:
82.85%
LE_num:
LEP:
0.36%
ME_num:
MEP:
2.19%
HE_num:
HEP:
14.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.96
Avg Expression:
1649.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -23.8594872073986 | 1.00976024436503e-05 |
2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -22.6231357029262 | 5.70486376948768e-05 |