Osa-phasi12g0167


Function Link


Basic Info

Source:

XR_001541906.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

4308

Sequence:

AGGGUUGUUUGGUACUUGCUU

Length:

21

PHAS Gene Name:

LOC107279583

Chr:

Chr12

PHAS Transcript Annotation:

uncharacterized LOC107279583

PHAS Transcript Sequence:

AUAACAAGGGAUUUGGGGCAACAAACCAACAGUGAAAAUCAUUUUUGCUAGCAGCCCACUUAAGUAACUUGCAACAAACAUCGGUUUUUGCUCGUGGUAAGGAGCACUGACUAUGGGAUGAAAUUCCCUAUGUUAAAAUCUCGCACCGAUCUUAUCUUCUCCUACUUUCACGAUCUUAUCUCCUCCCACUCUCACUUGGACUCUCCCUGUCCUUCCCCACCUCUCCUCUUCCCUUCCCCUACCCUGUGCCCCCACGUUCUCCCUCACCUCUUGUCUUCCCUCCCCAACCCUGUGGCCCCACCUCACCCCUCUCUGACUUCUCUUCACGUCAGUGACCACGGUGGACCGGUGACGGCGGCGACAACGGUGGACUACGAGGGGCGUGGGCCGUGGAUCCUCGGCCAGGAGGGGCGCAGGCGUGGUGGAUUCGGCCGCCACAGGGCCACGGGUGGUAAAUCCUAUCGUCAGAGGGCCACGUCUCGAGGUUCACUCGAAGACAGCGGACGCAGCAGCGACGGCGAUGGCGACGGGUGGCAGAUCCGGUGGUGCGAUGGUUGUAUACCGGCUAUACCCUCCCUCUCCCAUAUUUGGCCGUAGGGAGAUGGCGGUGGCAGUAGCCGAGGGGUUGGCAGAGAAUGGAGGAUCCUCAAAUCUCCAACCUCCAUUCUUGUGGCAUCCUCAAUCUACUGGAAUAUAUAUUUCACUGAAAGGCAAAGUUCUGUCAUAUCAUACUCAACUGUCUCUCCUUUUCUGGUCAAAAUUCACGAUGGAGAUUUGGUCUAUAGCUUCUGUUACAACACUUCAAUAGGGUGAAAAUGAAUGAAAAUGUGUGCGGCCCGGUGACAGGUAGCUGUCGAUGGGCGGCGCUAGGCCUUGUGACCAGUGGGUGAGCAGCUAGUUCGGGGAGGGCGCUGAGACUCAGUUGGGCGUGAUUGAAUGCGUGGGUCGAUCGGCGACAACGUUGGCCGGAGAUGCGAGGUGGUCAGUGGCAGUGAGUGAUGGAGUAAAACCUGAUGAUUGUGAUGGCUGGAGGCGGCACACGGUGGGAUCUCGCCAAAGCUGCUUGCCAAGGGAUGUCGAGGAGGUCAACAACCGGAACAAAAUGACCUGGUGGCUUGCUGGGAGGUUGGGGGAGGAUGGCAAUGACGCGCGAGGGAUGAUGACGAUGGCGUGCCAUCGAGAAUUUCCCUCACCAAUAAAAACAAGAGGAUGGGGCAUGUAAGGUUGAGCCUCCGGGACUUGUAGUUUGGAGAGGUGAUUUAGGGGCUUCCCCAUAUUGAGGGCUCUAGUAGGGACCCUGCUGGACCUGUACUUUUGAUAUCAACCGUAAAAGAAUAUUUGGGGACUAUAUUUGAGGAUCCCGCUGGAGAUGCUCUUACGACCCUGAACACUAUUAUGAUCCACACCUUGAAUCAUACUCCACCUUGUAGGAUCGAACAAUAUGAAGCAAACGAAUCAGAGGGGUGUGAAUUGUUGUAGUACCCAAAAACCAAACCUUCCAGAGGAAUAAAAAAUUAGAUAGCGAUCGGUGAAUUCGCUCUGGUCUGACUGCCCACCAUGUCGUUGUUGCCUCUCGCCGCUGCCAAUCUGACUGCCAUAUUCCCACUGGUCUGACCGCGCCGGUGUCGUCGGUCUGACCACCGGUGUUCCAUAAAUCGAAAAUCUCCCAAAUUAGAUUGAAUCUUUAUUACUUCUCUAUGUGUUUACAAAGUGGAACAACAACACUCCUCACGGAAAUCUCGACUAAACACGAAACUCUAACUUUUCUCACAACGCAACUCUCUCAAAAUCGAUACCGGGAGGCCAUACCCUCACUCUCUUUAUACCCAUGGUAGGCAUCCUAAAUCCACGAACCAACCUUGUACAAGAUGUCCUAAUCCCCUAGGAAACCUUCACGUACAAGAAACGGACAUUACAAACUCCAAUUGUACUAAAUUUGGACUACUCCAAAUUUGACUCCACCUCUCAUACGCACACAAUAUCUCCAUCGUAUACCAUAUAGAAUCUUCACCAACCAUAUGCAUUGAUGUCAAAGCUUGACUACUUCAACAUCUCUGGCCCGAGAGACAGUGUGUGAAGACCUGAUGGACCGUUGGUGCCUACAGGGACUAUACAUGUGAGACCAUCGUUAUACAGUAAAGGGGCGGGGAACGGUUAACGGACACUAAUGUGUGAAUGGAGAGAUUGUUGAAUCGUCCCCCACAUUGAUUUUGGAUGGUCAAGAGACCUAAUAAGUGGGGGAGCACCAUAAUUCAUUGGCUAUCUUUUAGGUGGGAAAAGCUUUUUAUGAUUCUAUAGAACCCAGCUGUACCGAACAACGCAAUCAAUUCUUAUAUACGUGGCAUUCCUUACUCUACUUAUAUAUGACAAGACAGGAAGAACAGGAUGUGAAGGAGAUAAAGAAAUUCGAUAGAACAUCAAUGGGUUCUUGCCGUGGUAGCUAGGAUGCAAAUCCUCUACAGUACUGCUGAUGCAGUAGCAGUGGUUGACAUGUGGGUCCGGGCCCACAUGUCAGUGUCUGCUACUGCAUCACUGUGGUAGCUAGGGUUGGGAGUAACCGGGAACCAUCUUAUUACACACAACCAUCUUCCUACAAAAUUCUCAGCUGAUUAUUUGUCAGGUUAGUAGGCUUCAGUAUGCACAUCUACCCGUCACGGUUCAUUGAUUAUAUUGAUCUCAGAAGGACGGUACAGCAUAGAUUAGUGGAAAUUUCAAAAUAGGCACAAUUGCAUCCAUACCCUCACUUUGAACUCUAACUACUGUUUUACCCCCCACAUUUUAGGGUUUGCAUUUUUCCCUCUCUUUUUGAAUAUGAACCAAUUGUUUACCCUCAUUUUUAACGUCUAGUUUAAUAGUGUUAGUUUUAGAACAAAAGGACAUUUAUACCCUUAGUUGAUGUUGCUUUUUUGCCCCAACUUUUAUACUGCCUGCUUCUCGUGCCGGAAGCCCCGUUGCCGUCUGCCUCGCCGCGCCGGAAGCCCCACGGCCGCCACAGGCCAUCGCCACGCCGGAAGCUCCACAACCGUCGCCUGCCAUUGCCGUGCAAGUGAGAUGGAAGCCUGCGACUGCCGCCUACCUCACCGCACAAGGGAGAGGGAAGUGUAGCCGCCGCUACACCGGAGACCUGUCGUCGACUCGCGCUCAACUGCUGCCGCGGCCAUCGCCGCAUGCACUUCCUGACAGAACUGCCGCGCACGCUGGAAUCGACACCAUCGCGGCGGUUCCCGCCCUCGCCGCGCAUGUCGGAACCGCCACCGUCGCCGAGCACACCGAAGCCGUUGCCGGUCGCCGCCUCAACACAACUGAGCUCAGCGAAGGAAUGGGCUUGGGUCCUUAUCCAUUCACUCAAGGGUACAAUAGUAAAUUAAAUCCUUUUUCUGUUUCAAUUUGUAUUUUUUUAACCCAAAGCCAUGGGUGUCAUCUAACGGGUGUCAAGAGUGAGGGCAAACGGCGUGUUCGUUUUCAAAAAGAGGUGGCAAAAAUGCAAACCCUAAAAAGUAGGGGUAAAAUAGCAGUUGACAUUCAAAAUGAGGGCAUGGAUGCAAUUGCCCCUUAAAAAUAUAAGUAAAAACACUUCAAGCAAAGUCAAAGUACUCUGCUACUUGCUAACCGAGGACUAUGUCACGGUAAUGAUUCGCCAUACAUUCCACUUGCUCAUGCUUUGCUCCAAGCUUGUGUUUCAUUAUAGAAUUUACUUAUCAUCUGCUCCUCCAUUUGCUUCCCUCUACUCCACUAACUAUUCAAUUUCUUUGUUAUAUGAUGUUGUUUAGUUACAUGACCAGGUGAAGUGUUUUGGGGAUGGACUGAUAAAAGAAUAGCUACUACCCCAAUUUUUUGUUGCUCUGUCAGUAAUGUGUAUGAAGUUCAGUACAUGCAUUCAUUCAUCCCAUUAAACAUCAGAAUCAAACAAGGCGCCCAUUGAACUCGGCUAUACAAUUCUUGAAUGACUGAAAUGUUUAUUAGACGAUAAAUUUCCUCUGUACCAUACCAUCUGAUCUCCUAUGCUCUAUAAAAGAGCAGAUGAAGUGUAGUAGCAACCUGUUUUUCUUGGCUGAUGUUGAGAGAUAUGAACAACAGGAGCUCAUUGUGUUUAGCCAGUCUACUCACUGCUUAGCUUGCUACGUACGGUAGGCCUGGGUGGCAUUGGGACAUCUCACAUAAGCCAGCGGUAAGCUGUUGACUGACCACUCUGCAGUUCCAGUCUCAAGCAAGUUACAGACUCAGAGUACAUCAAUGGACAUGUUUGGUGUUCAAGCCUGAACCAUUUGAUGUUAGCAACCGGUUUCUCCACACCUUGCAGAGUUUUCCAGGGUUGUUUGGUACUUGCUUCUCGAGUGGAUCUGGUCAUCUCAACGUCGAGAAACCCAUCUCCGGUCUACUCAGUUGUCUUGCCUAGGGGAACAUGAACCUUGUAAACUUGGAACAACUGAUUUGGGUGAGGCGGUGGCUGAAUAAGGUUACUUUGUGAUCAUUCGCACGAGCACGGCGGAGCAGAGCAAGACACUUUGACUGAAACGGAGAAGGCAGGGUUGGGUUUCCUUCGCAAAAUUCCAGCAGUCGCCGUCAUCCUCGAAACCUCUCGCCGAUGACACUGUGACGCUCUCCACGAACACAUACGCUUGCAAGCUAGGCGACGCAGCCACACAGCACGGCCUGUGCCAGCAACGAUGUGUGAUAAUUAAUAAGAUUACUGUUGGAGAUCGUCUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

230

NEP:

83.94%

LE_num:

1

LEP:

0.36%

ME_num:

8

MEP:

2.92%

HE_num:

35

HEP:

12.77%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.94

Avg Expression:

137.00


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi12g0167 is not a differential expression ncRNA.