Osa-phasi11g1233


Function Link


Basic Info

Source:

XR_003239486.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

2886

Sequence:

GAACCAGAGGAUCACCUUGCC

Length:

21

PHAS Gene Name:

LOC112936942

Chr:

Chr11

PHAS Transcript Annotation:

uncharacterized LOC112936942

PHAS Transcript Sequence:

AUUUAGUUCUCAAAGUCCUGUUUUUGGAUUGUGAUUUCCACAAGGCAGUAAAAGAAGUGGUAUAUAUUGCUGUAUUUUCUCAAGUACCAUAAAAUUUAACAAGCUAAUAAAUAGAGGUAAUAUAAGAGUCGUGGAGGGUGUGUGCUUAUAUAUGAACUCUACCGAACUACAUAUAUAUCCCAUUGGUACAACCCAACGGGCAAAGACAAUCCAAACUCAUAAGCUAGCUAGCUGCAUAAAUCAGAGUGGCUACGUAAUGUACCGACCGAAUAUGGGCCGUAAUAACUUGUACAUGAAACAUGGUUGCGCAUUACUAGAGAUGGGAUAGCUCCCGUGCGCCAAAAACACCAGGGAACAGGCAAAAUCCACACGGUAACAACGUUACCGAGUACCACCGCACGGUAACAGACAUACGGCGGCUUCAUCGGUUUCCCGUGCGCACUUCCAGGGUGUUUCACGAUUUUGCGCACGGCAUGGCCCAAACCAUACUGUGUGUGCUUAAACACACGGGAAGGUUCCCGGAGCAUUCUAUGUAACGGAGUCUUCAAACGGAACGGCGAUAGAUUAGUUCUUGGUUUUGGCUUGGGAGACAUCGGAUUGUAUUUCGAUCCUACAAUUUACAUGAUGCAUACAUAGCAUUUGGCGAUCGGUACAUAAAUCGUCGACCUCACUCCUCUUUGGCAAUUGGCAGGGUUAAGUGGGAUCCAUGCCAGCUCAAUUGUUUGUCACUACUUUAUCGUCUUUCCAUGACUCUCUUUUCUGUGUGGGCGAGUGUGUGUUUUUGGUGGCUAUAAGCUAUAACUUUUCAAAAAAAAAUGGAAGCUUUCAUUGAACUCAAUAGAUUACAUCGAGUGGUUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAAUAUUGAGAACAUUCUCGAUCUCUACGUAAUUAUGAUAUACAGUAAAAAAACUAAUACAUUUUCUCAAGACGGCUGAAAAAAAGUUCAUGAAAAACCCAUGAACACCCUCUCCAAACACAAACAUGCCAAGGACACCAACCUUGCAUACUCAGCUUCUGGAAUAGAUAUAACCCACCUUGGUUGUACAAGCAAACUAUUCUCUUCGUCUCAAUAUAAGUGCAAUCUAAUAUGGAUAUGACAUAUUCUAAGACUAUGAAUCUAAAUAGUUGUAUGUCCGUAGUCGUAAGAUAUAUAUAUAUGUGUGUGUGUGUGUGUUACAUCUGUACUAAAUUAUACUUAUAUUGGAAUGGAGGGAGCACUAGAUUAUGCAUGAAGGGCCUAUUAUAGACUAAGCCCAUAUAAAGGGUUGUAGAAUACAAAUUUCCUACUUCUCCUAGCAAGGCAUGUUACAUACCAAAUUGCCUACUUCUCCUAGCUAGAAUACAAAUUUGUAUGACAUAACCAACUUAAAAUAUCAAGGGAUAGAGGGAGUAUAUCUAUAUGGUGUGCCAUGAAGGCUAGCCUGAGUUAUUCUUCCAUACAUUACUCUGAUUUAGAAACAAGUUAUCCUGAUUUAGACUUGGAAGUCAUCGGGAAUAUGGAUGACUCAUCCUAAAGGAAUCAUGCUGACAUAAGAGCUCAAUGUUGUGCAACUUGGUUUCGUAGCGUCAAAGAUACACAUGACGAAACAAAUGUCGGAUAUUUUCCAUCCAGUUAUGUUAGUUGUGAUUGUGGAGGCUGAGCAUCCCAACCGAGAUGUUUCUAGAUCUAGAGUUUCAUUUUGGAAGAACUAUUUUCACAAACCGAGAAGUCCUGCUCAAAAAAUUGACUGCUUUCCUUCCUGACUUUCCAGAAUGGUUUGUGCUAGCUAGUUCGACUGCUCGAGCUUAAUUAACUAGAGGAUGGAUAGGCCUAUGUCAUUUCUGAUAUUCAUGUAUAUAAGCACUACUUUUUAUUUAGCCGACAAUGGAAGAGAUUAUCUUUGCAUUUCUGCAUGUUCAUUAGAAAUGGUAGUGAAUUGAUGAGUGCUUCAAAUGAAGUUACUAAAUGAUCGAAAGAGUUGGUAUCAGGGUUUAAUGAUUCGGUUUGCUGAUUACGAUAGGGGUGGCCGAAAUACCGAAAUUUCGGUCCAAAGUUUUGUGAACUUUUUAAUAAAUUUUGACUAAAUUUGAACAAAAUAUUACCAAAUUCACCAAAAAAUGAAAAAAAAAAUUUAAAAUUUCGGCCAAAAUUAUAUCGUAUCGGGGGGUCCGAUAGAACUGAACAUUUGGAUAUUUCGAUCCGAAAUUAACUGUGAACCCUGGUUGGUAUAUAAGAAUAUUCACACUCGCCAUAGAACUGGUUGCUACUUAAUAAAAAGUACGAUCUAUAUAUCAAGUACUGGAUAUAUAGCUUUAUAGUGUGGAAUCAAGAUAGUACAUGAUAGUAGGGCGAGCAUCUAUAUAUGCCUCUAUCAUGUGUGUGCAGUGCUAGCACAUGCCAUUUAUUAGUAGACUAUUUUUUUAAAUUAAGCUUCAAUGUGCUACCUAUUACACAUGUUGUGGUUACACACUGAGAAAGCCAUGCAUGACGGGAACAUUGCAAAUUUGCAAUAUCACUUCUAAGUGAGGAUUACACUGAGGAGUGUAUUUUUUGUUGAAUAGUCCCACAUUGAUUGUGGAAGAGCUAAGGACCUAAGAUAUAAGUGGGGAAGCCCCUCACCUCAAUGGUUAGCUUUUGGGGUGGGAAAGACCCUUUACGAUCCUAUAUUUUUGCUGCUCUUGCCGAGUGUUUUUGGCACUUGGGGAGAAUCUCCCAUAUCAGAGGUGUAGCUUGGGAGAGCCACAUAUAUAUGACAAUAUGCAAAUAGCUUUUGUGAAACUUUUGUCCAUCCAUGCAAAGAAUAUAUACGAGCUUAGCUACAUUUUGGGAGUAGGUGACAUCGAGAAUCAACAUGUGGCAAGGUGAUCCUCUGGUUCGAACCAGAGGAUCACCUUGCCUACCUCUAACAUCUCAGAUUGUGGAGUUUAACGAGUACUCUAAGCUAGAGUUGUUAAUUGAUCUCUUUGCUAGUACUCUGUCCCAACUAUUAGACAUCUGGUUACAAAAUAAUCUUCAGUUUCGGCCAUGAUUACCUAGGCCCGCGCA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

243

NEP:

88.69%

LE_num:

7

LEP:

2.55%

ME_num:

13

MEP:

4.74%

HE_num:

11

HEP:

4.01%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.96

Avg Expression:

11.26


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi11g1233 is not a differential expression ncRNA.