Source:
XR_003239486.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
1744
Sequence:
CAGGACUUCUCGGUUUGUGA
Length:
20
PHAS Gene Name:
LOC112936942
Chr:
Chr11
PHAS Transcript Annotation:
uncharacterized LOC112936942
PHAS Transcript Sequence:
AUUUAGUUCUCAAAGUCCUGUUUUUGGAUUGUGAUUUCCACAAGGCAGUAAAAGAAGUGGUAUAUAUUGCUGUAUUUUCUCAAGUACCAUAAAAUUUAACAAGCUAAUAAAUAGAGGUAAUAUAAGAGUCGUGGAGGGUGUGUGCUUAUAUAUGAACUCUACCGAACUACAUAUAUAUCCCAUUGGUACAACCCAACGGGCAAAGACAAUCCAAACUCAUAAGCUAGCUAGCUGCAUAAAUCAGAGUGGCUACGUAAUGUACCGACCGAAUAUGGGCCGUAAUAACUUGUACAUGAAACAUGGUUGCGCAUUACUAGAGAUGGGAUAGCUCCCGUGCGCCAAAAACACCAGGGAACAGGCAAAAUCCACACGGUAACAACGUUACCGAGUACCACCGCACGGUAACAGACAUACGGCGGCUUCAUCGGUUUCCCGUGCGCACUUCCAGGGUGUUUCACGAUUUUGCGCACGGCAUGGCCCAAACCAUACUGUGUGUGCUUAAACACACGGGAAGGUUCCCGGAGCAUUCUAUGUAACGGAGUCUUCAAACGGAACGGCGAUAGAUUAGUUCUUGGUUUUGGCUUGGGAGACAUCGGAUUGUAUUUCGAUCCUACAAUUUACAUGAUGCAUACAUAGCAUUUGGCGAUCGGUACAUAAAUCGUCGACCUCACUCCUCUUUGGCAAUUGGCAGGGUUAAGUGGGAUCCAUGCCAGCUCAAUUGUUUGUCACUACUUUAUCGUCUUUCCAUGACUCUCUUUUCUGUGUGGGCGAGUGUGUGUUUUUGGUGGCUAUAAGCUAUAACUUUUCAAAAAAAAAUGGAAGCUUUCAUUGAACUCAAUAGAUUACAUCGAGUGGUUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAAUAUUGAGAACAUUCUCGAUCUCUACGUAAUUAUGAUAUACAGUAAAAAAACUAAUACAUUUUCUCAAGACGGCUGAAAAAAAGUUCAUGAAAAACCCAUGAACACCCUCUCCAAACACAAACAUGCCAAGGACACCAACCUUGCAUACUCAGCUUCUGGAAUAGAUAUAACCCACCUUGGUUGUACAAGCAAACUAUUCUCUUCGUCUCAAUAUAAGUGCAAUCUAAUAUGGAUAUGACAUAUUCUAAGACUAUGAAUCUAAAUAGUUGUAUGUCCGUAGUCGUAAGAUAUAUAUAUAUGUGUGUGUGUGUGUGUUACAUCUGUACUAAAUUAUACUUAUAUUGGAAUGGAGGGAGCACUAGAUUAUGCAUGAAGGGCCUAUUAUAGACUAAGCCCAUAUAAAGGGUUGUAGAAUACAAAUUUCCUACUUCUCCUAGCAAGGCAUGUUACAUACCAAAUUGCCUACUUCUCCUAGCUAGAAUACAAAUUUGUAUGACAUAACCAACUUAAAAUAUCAAGGGAUAGAGGGAGUAUAUCUAUAUGGUGUGCCAUGAAGGCUAGCCUGAGUUAUUCUUCCAUACAUUACUCUGAUUUAGAAACAAGUUAUCCUGAUUUAGACUUGGAAGUCAUCGGGAAUAUGGAUGACUCAUCCUAAAGGAAUCAUGCUGACAUAAGAGCUCAAUGUUGUGCAACUUGGUUUCGUAGCGUCAAAGAUACACAUGACGAAACAAAUGUCGGAUAUUUUCCAUCCAGUUAUGUUAGUUGUGAUUGUGGAGGCUGAGCAUCCCAACCGAGAUGUUUCUAGAUCUAGAGUUUCAUUUUGGAAGAACUAUUUUCACAAACCGAGAAGUCCUGCAGGACUUCUCGGUUUGUGACCUUCCUGACUUUCCAGAAUGGUUUGUGCUAGCUAGUUCGACUGCUCGAGCUUAAUUAACUAGAGGAUGGAUAGGCCUAUGUCAUUUCUGAUAUUCAUGUAUAUAAGCACUACUUUUUAUUUAGCCGACAAUGGAAGAGAUUAUCUUUGCAUUUCUGCAUGUUCAUUAGAAAUGGUAGUGAAUUGAUGAGUGCUUCAAAUGAAGUUACUAAAUGAUCGAAAGAGUUGGUAUCAGGGUUUAAUGAUUCGGUUUGCUGAUUACGAUAGGGGUGGCCGAAAUACCGAAAUUUCGGUCCAAAGUUUUGUGAACUUUUUAAUAAAUUUUGACUAAAUUUGAACAAAAUAUUACCAAAUUCACCAAAAAAUGAAAAAAAAAAUUUAAAAUUUCGGCCAAAAUUAUAUCGUAUCGGGGGGUCCGAUAGAACUGAACAUUUGGAUAUUUCGAUCCGAAAUUAACUGUGAACCCUGGUUGGUAUAUAAGAAUAUUCACACUCGCCAUAGAACUGGUUGCUACUUAAUAAAAAGUACGAUCUAUAUAUCAAGUACUGGAUAUAUAGCUUUAUAGUGUGGAAUCAAGAUAGUACAUGAUAGUAGGGCGAGCAUCUAUAUAUGCCUCUAUCAUGUGUGUGCAGUGCUAGCACAUGCCAUUUAUUAGUAGACUAUUUUUUUAAAUUAAGCUUCAAUGUGCUACCUAUUACACAUGUUGUGGUUACACACUGAGAAAGCCAUGCAUGACGGGAACAUUGCAAAUUUGCAAUAUCACUUCUAAGUGAGGAUUACACUGAGGAGUGUAUUUUUUGUUGAAUAGUCCCACAUUGAUUGUGGAAGAGCUAAGGACCUAAGAUAUAAGUGGGGAAGCCCCUCACCUCAAUGGUUAGCUUUUGGGGUGGGAAAGACCCUUUACGAUCCUAUAUUUUUGCUGCUCUUGCCGAGUGUUUUUGGCACUUGGGGAGAAUCUCCCAUAUCAGAGGUGUAGCUUGGGAGAGCCACAUAUAUAUGACAAUAUGCAAAUAGCUUUUGUGAAACUUUUGUCCAUCCAUGCAAAGAAUAUAUACGAGCUUAGCUACAUUUUGGGAGUAGGUGACAUCGAGAAUCAACAUGUGGCAAGGUGAUCCUCUGGUUCAACUUCUCCAUCGCGCAUGCAUACCUCUAACAUCUCAGAUUGUGGAGUUUAACGAGUACUCUAAGCUAGAGUUGUUAAUUGAUCUCUUUGCUAGUACUCUGUCCCAACUAUUAGACAUCUGGUUACAAAAUAAUCUUCAGUUUCGGCCAUGAUUACCUAGGCCCGCGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
245
NEP:
89.42%
LE_num:
LEP:
0.73%
ME_num:
MEP:
5.84%
HE_num:
HEP:
4.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.98
Avg Expression:
70.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
Tip: Osa-phasi11g1218 is not a differential expression ncRNA. |