Source:
XR_003239216.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
162
Sequence:
CCAUCCAUCCGUUGUUGCGU
Length:
20
PHAS Gene Name:
LOC112936817
Chr:
Chr11
PHAS Transcript Annotation:
uncharacterized LOC112936817
PHAS Transcript Sequence:
AGCAUGACCAACUGAAGUGCAAAACUAGGCCCUUAGAUGAGAUAAUAAGCUUCUGCAUGAACUGCUACGAUUGUUAGAAAAUUGCACACGGGAAAAGGGUGAAAUGCAUGUAGGCUUGGGAAGCAUCGGGAGUGGAUCCGACACGCAACAACGGAUGGAUGGCCAUCCAUCCGUUGUUGCGUCUGCUGCUUAAGGCGUUUUGGGGAGAUGUCACUUGAUUGGCCAGCGUUGCAGGUGCACUAUGUGCACCAGUUCGGUAUCUGCGAUUGGGGAAAUGCGAAAGAACGGUACAAGCUGAUCGGCUGGAGUAGAAGAUGCAGCUGAACGUAGAGAGGAAUGGAAGAAGAUGUCAAGACUGCUGGAGAUCGAGCUGAAGAUGUGAUCAGGGUUAAAUGUUUCGGUUUGCUGAUUUGUAUUGGGGGUGGUCGAAAUAUUAUGAAUUUUUGAAUAAAAUUUGACCAAAUUUGAACAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
236
NEP:
86.13%
LE_num:
LEP:
3.28%
ME_num:
MEP:
9.49%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.91
Avg Expression:
7.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| Tip: Osa-phasi11g1072 is not a differential expression ncRNA. | |||