Osa-phasi11g0940


Function Link


Basic Info

Source:

XR_001541045.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

2876

Sequence:

UAUCAUGCAUCUAGGGCUCGC

Length:

21

PHAS Gene Name:

LOC4350959

Chr:

Chr11

PHAS Transcript Annotation:

uncharacterized LOC4350959, transcript variant X1

PHAS Transcript Sequence:

UCUCUUUUUUUUUCUUAUUAUAAAAGCUGCAAAACACCUCCUAAUUUACCGUCCAUAUACAACGGAAGCAGGACUUCGCUGCUGACCAUAUGACGACCUCGGCGAUAAGACUGCAAUCCCUUCUCUCAACCUUGUUGCUAGUGUUCCUGCUUCUCACCGGCAGCAACCUCCUCCUUUCAAGAUCAGCUUCUACGCACCGACCAAGCCCUUGUACCUUGGACCCCACCAAUCCAUCUCCCAUCUGUCCUGGUCAAGCUCCUUCCCCGUAUUGUCCCCAACCGCCAUGUCACAACAUGAAUCACGCGCCAGCCACGGAGCAACAGGGUGCACAUUUGCCUUAAGUAGCAGAUGGUAAAGGGAGCGAGGUGAAAAACGUAUAUAUAUUCAGGGAAAAUUUCAAACCACCCCAAAAGUCAUUUAACGUUUGAUGUUUCACCCUAUAAGUAAUUUUGUUGGAAAAGCCUCCCACCACCCAGUUUUGUUGCAACAAUCUUUCAAUACAAACGUGAUUAAUCAAAUCAGCCCGUUAUCACUGAUAUUGUGCCACCAUAUGCUAAACUAGCCGAGUUAAUCUUGUCUAGGUGCUUAUAUUAGACCACUCUUUAUGUUUCACUGUAUUGAUUUUGUUAAUAGCUAAACUCAGUGCAAUAACGUUUAAGAUCUGAUCCGCAAUUAUGUUUGUGGGAAUCUUUAAAACUUUUUAAUUUUGACAGCUCCUUGUUUAUGAAAACAUGUUGAUUUGGUCAAACACGUACGUACUGGGAUGGUUUUCUGGACACAACAGUAGGAUUUUAGGAGGGUAGAAAUUUAUAGCAACAUAAUUUAUGGGAUGGAAUAUCAAAUUUCAAGUGUUUUAUACUGUGGUUUUUGUAAAUUUCCGUAUAUUUUAGUUCGUGUCAUCUUUUAACUCGUCCCACAUCUGUGAUCGUCUAGAACUAUAGUAUGUAGUAGUAUGUAAUAACUUAUGAUGUAUUCCUACUAAGGAAAUAAUAUUUCCAUUGCCUGCCUGCUAAUGCUUUUCAAAUAAUCAAUAUAUCUAUCUAUCUAUCUAUCUAUCUAUCUAUUAUAUACAUACUAAAAGUCCAUUAAACUUCCUACAAACGCUCUCAAGCCGCCACGUGAAACUCCUACAAACGCUCCUAGGUCGCCAAGUGGCUCUAUCUAAUCUAACCGUCGAUUUUAACUUAAAUUGGUGGACCCAAUAUUUUAGACCAUUAGAUUAGAUUUUUACUUAAAUCGGUGGACCCGGUAUUUUAGACAAUUAGAUUAGAUGUAUUUUAUUUUAUUUUAAAGAAACUAAUUCCUUACUCUAUUACGUACGUAUAUGGGAGAAACACAACUGAAGUAACCAAUAAAGCCUACCUAUUGUUCGCGUCAAAAGAAAAAAAAGCUGCGCACAGAAUUACUAUAAAAUCAAUAAGAAAAAAAAACCAUACGUACUUAGCACCAUGGGAAAAAAUUGAUGAUAUUUAAAAUAGGAUUUUCUAUCAUUUAAAGAUAAAAUAUUUUACUCUAUAAAUUUACGUAAAUAUCACCGUUGAUUUUCAUUUAAAUUGGCGGACCCGAUCGAUGUUUUAGAACAUUAGAUUAGAUGUAUCCAUUAUGUAUACUUCCUAAAAAUGCUCCUAAUCCGCCAUAUGACAUCCUGCAAACGUUCCUAUGUUUCCAUGUGAUGCUCUAAUAAAUUAGUAAAAUUCUACUUUGUCUCUCUGUCCUUUAAAAAAAAGUUUUGUUUCGGUAUCAAAUUUUGCUCCAUAAAGAGUGUAAUUUUUGGUUACAAAGAAACUUUUUAAUGCUGCUUCGUCGAUUUCUACUUCAUUUAAGCACAAAACUAAUAACAGUAGCUCCUUCUCCGAUGCUUGUUUUCACCUCUCCUUAUUCUAUAUGAAGGGUACAAGUAAUUGUAAUUAUUUACCUUUUGUUUAACUUGUCUUUAACUAACUAAAAUAAUAUUUUUUUAGAAAUGAAGAGAGUAUUAAGAAAGAUAUUAAAACACUACUAUGAUUUCAUUAAUAUGGAGAAAAUAAGGUGGGAGAAAUAAGGAGGCAUCUGGUUCAAUGGCUAAAAACAACAAAGAAAAGGAUGUAAUAGCACUAUUGAAUUAGAUUUAGCGUAUCAUUAUAAAACUACACAAUCAAUUUUAGGGUCCAAUUCUUAAACUAAAACUACACUUUUAUAUGGACAGACGGAGUAGAAAAAAUAGAAAUUAAUUUUGAGUCCUCCGUAUAUAAGACGUGGGGAUGCGUGCCCAUGGGUGAAAUAGCUUCUCUCCCUCUAGGCCUUCGAAGCGCAGGGGAUGGUAGCUCCGGUCAAAUUAAUGUCGACAAGCCUACAAGAUUGCUCUAUGUCAUCCCGCCUGUCGCUGGUCAUCGUCCUGCUUGUUAUCGUCGGCAGCACGGCCAGCACCGUUCCUCCUGUUGCCAGUUCAAUGGAGAACUCUCCUUCCGGAUAUACUCUAUAAGUACAUACAAGAACUGAAAGUAAUAAAAAUUCAACCAGCAUUUGCUGACUUGUCAUGAGUCAGGGCCAAAGCCAAGUGGUGUCCAUCUGGCUCCAUCACGCUGUCCAUGGGCCAUUUCUUACAGGUCCGUGUUAAUUAUAUGUAUAACUGUUUAAAAAAAAUUAUAUGUAUAGCAAAAAUUGAUCUCGUGACAAGUUGUUGAUGAUUUUUUUGAUGGAUGGAUGGUUAUUAUUUUUAGUACAAAUUAAGGUGGCUUCAUCUCAUCUGUAGAAAAAUAUGCAAUGACACACAUUUGGCCAACUCCACUCAACAUAGUUUUGUUGCGACUACACUAAGGAAGUUGACAAAGUGAAUCAAAGAUAUAGCUUGACGUUACACCGAGAUGACCUGGUGAAGUAGGUUGCAAGCUGCACGGUAUCAUGCAUCUAGGGCUCGCAGAUCUCGAUCAUGGGUGAAGAUAAGACAUGGACAUCGAGACAGUUUCGCCUCUGUACGAGAACAUCACCGAAACAUAGAAGAAGUUUGAUACAAACCACUGAAUGAAAGAAGAUGCAGUUAUUUCAGCAAUUCAGCUGCCGCGCCUCCAAUCUCUGCUCAUCCAAAAUGUUAGUAGCAGAGAGUUUGCGAGAAAGCUGGUUAUGCACGGUCUUCUCCAUUACACGAAAUGCAGUCCUCGGUAACGUGCGAAUCGCACGCAUUGAGAGGCAGAAGAACCAUCCGGUCGUCGUGAUGGGGAUAUCUCCGUGCUACUGCAUUGCUUUUUUCUCUGCAAGCCCCGAAGCAAAGUUAAAAUCUCGAGCUACAUAUGUCGGACAAUCCUGUUGCCUCCCAAUCCAAAUUUUACUUUGGUUUUCGCUCUUGUUUGGAUGGAUCUUAAUGUCGACUCAUCACUCAUGCAUCGCUCA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

252

NEP:

91.97%

LE_num:

2

LEP:

0.73%

ME_num:

5

MEP:

1.82%

HE_num:

15

HEP:

5.47%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.97

Avg Expression:

194.30


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi11g0940 is not a differential expression ncRNA.