Osa-phasi11g0738


Function Link


Basic Info

Source:

XR_003239289.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

1164

Sequence:

UAUGGAUGACAUCAAUUACUU

Length:

21

PHAS Gene Name:

LOC112936868

Chr:

Chr11

PHAS Transcript Annotation:

uncharacterized LOC112936868

PHAS Transcript Sequence:

GAAAGUUGGGGAUGCAAGGCCGCAAUUGUAUUCAGUACAUACUUGAAUGACCAGUAAAGAUAUAUGCUAUUAUGCAUGUAUCUAGCUAUUGCUACAUUUUAUGGUGUUGUAGGCCCAAAAACUGCAGCUGAUCUAAGUCAAAAGAUCAUGAAAAAACUUCAUAAUGCCAUAUUCUAAUUUUUUGAAUUGUUUGUUCAGCACAGGAGUAGUAUUUCACAACCACACAUUAAUUGGUGCAAAACCAUAAUGGACCGCAUGUUUUUCACAAUCCCAUGCAAAUGGCACAUAAAUAAGCUAUUCACAUAGCUUAAUUAUAUUUGACUCUAUAAGUGAGUUCACCGGUCAACCCACUUACACUCUUACUAUAAUGCAUGAUUAACCUCAUACCAGUACAGCAUGUUGCACCCUGCCAUCCUAUCAGUAUUUAGCCGGCGAAAAACUAAGAGGUAGCGAUUAGCGAAAGGAUCGUGGGGUAAUUAACUGGAAUGCUCGGCCACACCUUUGAUCACAGAUAGAGGCCGGAGAUGUAAUACAUUUCUAUUAUCUAAAAAAACACCUUUGAUCACAGGGAGGUUAUAUUCACAUUUCUGAAGAGAGAGAGAAGCUUCGAUGGUCGAAGCUUGUGCAUGAUUAUACAUAGUAGUUGCUAAUGUAUAUACAUACACAAGCCAUGUGAUCGAUCAGCAACGGAUGUUGAUGUGGACUCUAGAUGAUUAGGUUGAUCGAUCGAUCAGCGCUUGGGCAAUUAGGUUGUUAAUGCGGACUAUGGAUGGUUUUUUUUUCUUGGACUCUCAUCUCGGAUGUUGCGGACGAAAAAAUCCACCAAAAUUAGGUGAAGACGGACGAAAAUCCACCGGAAUCCUUACCUAUUUUUUAAUUAGGUAUAGAUUAUCAGAUAAAGGAUAAUUGGUAAUUUUCCUUAUGGAUUCACCUUAAUUGGAUGAAAUUAGAAAAAAAUGACUUUUUUUUGUUUUGAACGUAAGAAUUAAAUACAACUACGAAUCACACGUUAGUUGCAAUGAAUAUAUAUUAGCAGUUUAGCACAUGCAAUUAAAACGGCAAAGAAAGUACACUAAUUCACCGCUAAAUCGGCCUUGUUGUCUUGUCAGGAAAGGUGGAAGAACGUCCGGCCGGUCAUAAAACAAGUAAUUGAUGUCAUCCAUAUAUGGAUGACAUCAAUUACUUCAUACAUUUGAGUGCAGCUAGCAGAGCUCAGAUUACACACGCCGUGAUAGUCAAUCGCAAACAAAGACGGCGAGAUCAGAUUAAUAGGUAGAGGUAGAUUUUCAGUGCUCGCUUUUUAAUUCCAAGAGCUGAGAGCACAUACUGUUCUCCAGUCAAGGUUCCUAAUGCUUCCCGUGCCAAUACAAAUGCGACUAUACAUGUGAAUUAAUGGUUCGUAAACAAACAUGAAAUAUCAUGCAGCUAUAGCCAUUGUGUGUGAUCUGGAUAUAUAUUUCUGGUUGUGUUGGGGAGACAAGGUUCCUAACCUUACCUCCCGAUACGGAAAAUAAAGCACGUGAAUAUAAUAAGAUUAAUUAAGUAUUAGCCUUAAGAAAAACUUAAAAAUGGAUUAAUAUGAUUUUUUAAAGCAACUUUCAUAUAGAAAACUUUUAUAAAAAAUACACCGUUUAGUAAUUUGAAAAGCGUGCACGCGAAAAAUGAGGAAAGUGAGUUGGGAAUGAGGGGAAAAGAACACAUCUCUCACUAUACAUGCACCUCACAACUAUACAUUUCUUCCUUUUUUUUGUUCCUCACAGAAGCAUAAUAUAAGGUGCAAGCUUCUAGUGCAUAAUAUACUGCAAAUAUGCAAUGAAUUGGCAUGUGAAAAUAAAUCUCAAGGGUACCUUCAAGUUUACUGGAGUGUGCUAGCUAGCUAGCAUCUUAAACGACAUGCAGUGGAUGUGAGAUUAAUGUUAAUUGGAGAUCUAACUUUGUCAUGUGUGAUCCUUUUCUCCGAUGGCGAUCGACCAUUUUGUUUGCUGAUAACUAUGACAAUUUCUAUGACUGUUAAGUACUGACAUGUCAGCAUUCUGUUGCCAAAUAGUAGUAUAUAUCCUUUUAACUCAAACGGAGGUGAGCCCCUACAUUUUUUUUAAUUUACUUUAUAAAAACUUGCCUACAAAGUUUAGCCCGGCCGCUCGGCCCAUUUAAGCCCACCCAAAUUUAGAAGGCUAAGGUUGUGUAUAAAUGAUAUUGUUCCAAUGGUUUAUAGAUUUUUGUUGGAUGGAGUCUAGAUUCAUUAUAUUAGAAUAUGUCACAUCUAACCAAAAUUUGUUAGGGACAAUUUUGUUUUUACCCUCACUUUCAUGUCUAAUAUUGAUUUUACCCUACUUUUUAGGGUUUUUGAUUUUUUCCCUACUUUUUUGAAUCGAAAGAGACGUUUACCCCUGGUUUAAAUGGAAGUUGGUGGGACCGGGUUUAUGGCAGUAAAAAAAAUAGAGAAAUAAAGGAAAAAUGGUUUUUCGAAUUUGUGUUUUACCUUCUUACCCCUUGAAAAUAUCUAACAGUCUUUUCUUUUCACGCACACAAAUCGACUCUUCCCGAAUCGUGCGGCGGCAGCCAGGCGGUGGCGACGGCGAGUGGGCUAGGGCGCAGCUCCUCCCGCCGGCGAGCAGGAGAGGGGUAGGCAGCGGCGAGCGGCGGCCAGGCGGCGGGGAGAGGGGUAGGCGGCGGGGAGCGGGCGGCAGCCAGGCGACGGGGAGAGGAGCGUAGGCGGCGUCGAGCUUCCUUGCCGCCGGCAUCGAGCUUCCUGCGCACCUCUCUUGCCGCCGACAAAAUGGGGCUCCAGAUCGACACCCACUGCAGCCUAACGGCAGCACAGGCUCGCCGCCAACACCGCGUCCAUGGGGGCACGGUUAGAUGAGACCAUGGGGUUGUCAGGGGUAUGCGGCCGCACUCGCCGAAAGCCGAUUAACAUCCCUGAUCUCCGUGGAGGAUCAUUGUUUGGUGAGAUUAUGAGUUCGUUUGUUUGUGCUCACCAACUGUUUGAGGAAAUGCUUCCGAGAUUUCGAGUACUAUAUAGGCACUAAACAUAUCGAUUUUAAUGUUGUUGGUACAGAUAUGGCUCACUAUCUGUCCAAAUUGUAAUCUCCAAAUCUGUCAUUUAAUUUUAAAACAUAUUCAAAAAAUAAAUUUUCAAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

262

NEP:

95.62%

LE_num:

5

LEP:

1.82%

ME_num:

7

MEP:

2.55%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.99

Avg Expression:

12.51


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi11g0738 is not a differential expression ncRNA.