Source:
XM_026021180.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
4536
Sequence:
CUUGCCAGUGUUGAUCUGUAC
Length:
21
PHAS Gene Name:
LOC107277922
Chr:
Chr11
PHAS Transcript Annotation:
chaperone protein ClpC4, chloroplastic, transcript variant X2
PHAS Transcript Sequence:
UGGUUGUUGAAUUAAGCUAGAUUAGCCAGCCAAAGGGCUCUGGAUCGAUACUUACUAAUGCGAGAUUUUAGCAUGGUUGAUUUUAGCAGGUGCAUUGUUGCAAUGUUACACGAAGGCCAAUUCGUCACAGACGAUCUUGCAAAAGCAUGACUCUUUUAGUUCAAUACUGACAAGUCCUUGUUCGAUUUCCGAUUUCCAUGUCAUAUAUAUGUAAUUCUUGUAAUGUUUUUGUUGUGGGAGUGGCUCCGGAUGGGAAGCACGCCCUCGUACGAGCGACAGCAAGAAACCUGGAGCCAUCCACCUCGGGAGAUUGACCGAAGUCGCUGGAUGCUCCGGAGGCCAGCCAGGGCCCCGGAGGCCAUCCAUGGCUCCGGAGACUGUCCAGGAGCUCCGGAAGGCAACUGAUGCUCCGGAGGUCGCCUGUGGGGCUGGAAGUGCCAAGGGGCCCCAAUGACGAGACUGGUGUUCUGGACUUCAGGGGCACAUGGUGACAGACAAUAAAUGUGCACUACGCCCUCUAACUGCCUUUGAUACCGCGGCACGGGCAAAGUGAUGCAGGCUAAUACCCAGAGGAUAUAGCCCAGCCUGGGUAACAGCCAGCACCCUCGGGAGACGCCCCCGCAUCCUUAAUGGGCGCAGCCAUCAUUGUCACUCUGGAAAAGUCUGAAAAACACAAGGCUGGCCCACCAGGCAGCCCUCUAGGGUCCACCUGCAAAUUAGGGCAACUAUAUAAUUUUCCCUUUGUAAUCUUGUAUAAAUAUGUAAACAACGUCCGUUUGAGAACACAUUAAAUACAGAGGCAAUACACCUCCACCUGCUGAGUUUUGUCCCAACAGUUUUGUCAAUCUAACGAUAUGUCCUAUCAUCAAUUUACAGGUUGUGAGGCGAACGACAACUAGAAAUCAUGCCGUGCGCUAUGCUGGUGGCAGCAGCGGUUGAGGUCGCCGUCCCAACCCUGGCUGAGGCUGCAGCCUUGGGAGCCAUAGGUGCAAUUCUGGCAGGGCCCUUAAUGCAGCCAACUAAGGUUCGAUCCCCUGUCAGAGUAAGAAAUAGCAAUUUGAAGUGCCAUGGAACCAAGAUGAGAUCUCCCUCAAUGGUUUCAAUGUCCCAGAGCCAGCGCAUCAAGAUACCGUCUUAUGUCGGUCUAAGCACAGUGCAUACUCCUGCACUACUCACACCUGUCAUUAGCUCGAGAUCGACAAGAACUUUCCAAAAGACAGCAAAAACAAUACAAGAACGGUCUCAUGCCGUUAUGCAAAUCCCUGAAUUUACACCUGGCACUGGCUUGAGAUCAACCAAUGCGAUUCAGAGAACAACAGAAGUACUGCAGAGACAUUCUCAUGUUGGUCUAAGGCAGCCACAUGCUGGUCGUCUAAGAGAAAUGCAUACAGCUUCAGGUAGGCCUGUCAUUGGCUUGACACCAACCAUUGUGUCUCAGAAGACAACCAAAGUGCCGAAACAGCCUCGUUUCGUCGCCAGGGCGAUUGAUAAUUUCAGCAGGGAGGUGAUGAAUGCUAUCGCGGUUGCACACGACGAAGCUCAAUACAUUGCACAUCUCACAAUCGGGAGCACGAACAUCCUGCUUAGCCUCAUUUCACAGUACAUUUGCAUUUUCCUCCUGGAAAUCAUACUCAAUAAGGCUUACAAAAUGUUCAGAGCUGCUGUUAGGAGAGCAACCAGGGGAGCUAAGUUAGCCACACUUAUGGAGUAUGGGACUAAUCUAACAAAAUUAGCAGAGGAGGGUAAAUUGGACCCUGUUGUCGGAAGGCAGAAGCAGAUUGAUCAUGUCGUCCAGAUUCUGAGCAGACGGACAAAGAACAACCCUUGCCUGAUCGGAGAGCCUGGUGUUGGAAAAACAGCAAUCGCAGAAGGGCUUGCUCAGCUCAUUGCCACAGGGGACGUUCCUGAAACAAUUCAACAGAAAACGGUUAUCUCACUUGACAUGGGACUUCUUCUUGCUGGUACGAAAUAUCGAGGAGAGUUGGAAGAAAGACUGAAGAAUAUCUUGGAAGAAAUCAAGCAGAACGGUGAAAUAAUACUAUUCCUUGACGAAGUCCACACUCUAGUAACAGCAGGAUCAGCAGAAGGUGCUAUUGAUGCUGCUAAUAUUUUUAAGCCAGCACUGGCAAGAGGUGAACUACAGUGUAUUGGAGCCACUACAAUUAAUGAAUACAGGAAGCACAUCGAGAAAGAUGCUGCAUUAGAAAGGCGCUUCCAACCUGUAAAAAUUCCAGAGUCAACAGUUGAUGAGACCGUAGGAAUUCUGAAAGGACUUCGAGAGAGAUAUCAGGGUCAUCACAAGGUCCAAUACACUGAUGAAGCCCUUGUUGCAGCUGCUGAACUCUCCCAUAAGCACAUCAGAGAUCGUUUUCUCCCUGACAAAGCCAUUGAUCUGAUGGAUGAAGCAGGUUCGAUCGUCAGGCUAAGAAAUGCCCAGUGUAAACCAUCGAAGAAGGUUAAUGAUUUGGAGGCAGAGCUCAAGAAAACCUUGAAGGAGAAGAAUGAUGCCAUCAGCAUACAGAACUUCAGAAGGGCAAAGCAGCUUCGCGAUCAUGAGCUGCAGCUCAGGACCAACAUCUCAGCUCUAACUGACAAGAAAACGCAGAUGAUGGAGCCAGACGCCAUUGCCAUGCCAGUGGUCACCGAAGACGACGUCCGGCACGCCAUCUCAAGGUGGACCGGCGUCCCAUUGCACAAGGUGUCCAUGGACGAAUCAAGAAAGCUCCUCAAGCUGGAGGAGGCCCUGCAUCGCCGCGUCGUCGGCCAGGGCGAGGCGGUGGCGGCGGUCAGCCGCGCCAUCCGCCGCGCCCGCCUCGGCCUCAAGCACCCCGGCCGGCCCGUCGCGAGCCUCGUGUUCGCCGGGCCAACCGGCGUCGGCAAGUCGGAGCUCGCCAAGGCGCUCGCGGCGUACUACUACGGCUCGUCGGAGUCGGAGGAGGCGGCCAUGGUGCGGCUCGACAUGAGCGAGUACAUGGAGAAGCACGCGGUGGCGAGGCUGGUCGGCUCGCCGCCGGGGUACGUCUGGCACGGCGAGGGUGGCCAGCUGACGGAGGCGGUGCGACGGCGGCCGCACGCGGUGGUGCUGCUCGACGAGGUCGAGAAGGCGCACCGCGACGUGUUCGACCUGCUGCUGCAGGUGCUCGACGACGGCCGCCUCACCGACGGGAAGGGGAGGACGGUGGACUUCAAGAACACGCUCAUCGUCAUGACGACCAACAUCGGCAGCAGCCUCAUCGUCAACAACGGCGGCGACGGCGCCGCCGCCGCCGGGAGGAUCAAGAACACGGUGACCGACGAGAUGAAGCGCCACUUCCGGCCCGAGUUCCUGAACCGGCUGGACGAGGUGAUCAUGUUCCAGCCACUGACCGAGCUCGAGGUCGGGAAGAUCGCCGGGAUCAUGCUGGAGGAGUUCGCCGGGAGGGUCAGGGAGAAGGGGAUCAAGCUGAAGGUGACGGACAAGUUCAGGGAGCUCGUCGUGGAGGAGGGAUUCGACCCGAGCUACGGCGCGAGGCCGCUGAGGCGGGCCGUCGUGCGGCUGCUGGAGGACACCCUCGCGGAGAAGAUGCUCGCCGGAGAGGUCAGAGAAGGGGAUUCGGUGAUCGUCGACGCCGAUUCAGCUGGGAAUGCCGUGGUCAGGAGGAGCAACGCCAUGCCUGCCUAGCUAGUACUGGUGUGCAACAAUUUAAUUGGAUACGUUUAAGAAUUUGGGAAUAUUUAGCUGUCGAAAUAUUUCAGUUCACAGCCAUAGGAUUUUGUAACUUUGUAUCGGAAGAUACAAAAUAUUGAUUAGUCGGCACAAAGCCAGUAGGUCAAGCUGAGUUCAGUUCAGUGAGACAGUGACUAACAUUAGUACACAAAUGGCAAUCACUGUCGGCCCAUCAGUGCAGUACUUGCAGAACUGAUCCCCAGGGAAUGUGGAAUCAUUAUCAAUUGUGCAAGCACGGUUCAUAUUAUCGCCGAAACAUGGAUAGAACAUUUCACAAUUCAGGUUUAUCGGUGGGUACCGGUAAAACACGAUAUUGGCCAAAAAUUUCGGUCAUUUCGGGUUUAUCAGUGGUUUUUUGAAUUUGCAUGCAUAACACUAUGGUAUUUGACGGCCUACAUGAUUUACAGAUUAUAAAUACUAUUUUUAUACCAAACGGUCUAGAUGCAAUAUACUUGAUUUCCUGCAUAAAUUGAGUUAAUUUUUAACAAAAUUUGGCAGAAAUUUUUUCUUAUCGCCGAUAAAAUUCUGAAUAAUCCCGUUUAUCGGUGCCCCCGAUAUUCCUUUCAUGUCGAUAAUUUAAACCCUCUCCGGUCUAUCCAAAUAAAGCCUCCCUGCAUGAUAAAUAGCAGAGGCACUCCCUUCUAUAUAUGAUAUCAUAGAGGAGUACGUGGGUGCAUAUGAAUGAUAAAAGGGUCAUCAUAUUCUAGCAUCCAAAUAGGAAGUAGAGGCACCAGGAAGCUAGUUUCAUGCAGCUUGUACUUUCAAUGAUCUGCCCACCCAUAAUAGAUUGUGACAACAGUUUGGUGUCUGUACAGAUCAACACUGGCAAGCUUGCCAGUGUUGAUCUGUACUGGUCGAAAACACGACGAUCCAAUGCUAUGCUCUUACUUGGGGAGAAAUACCAUUUCUCAUAUAGGAGGGCCGAUUUCAUACUGUGAUGGAAAUGUUGGUAUUAGUGAGGACAUUCCACUCAGUAUCUAAGAUGAAAGGGCCUAGAAGAGAUGUCUAGGCAGCACCACUCUGUAACAAAAUUGGACUUAAUAUCCAAGGAUUAAAGAUCACUGUUAAAGAUCUCCUGGAGGAGAAUUGAAGCACCAUGAUGUUAGUCAGGUGAUUGACGUUUGAUGGUGUUGACCUUUUUUUAUUUUAGAAAAGGGAUUUUUUACCCGGUCUCUACAUCCAACCGGAUAUACGUGGCCAUUUAAAUUGGAAACUUAGCCCUACAAACAACCCAAUAUAAAAUUCACUCCUAUGGAUAUUCGAAUUCAGGAUCUUAGAGUACUACUCAGGUCACUGCAAGGACUAAGCUACCUGCCCUUUUCACGGUGUUGACUUUUGGAGGUACACAGGCAUGCACUAGCUCAUGGUUGUGCCAGGAGUCCAUCACAGCUUUUGAUUUUAAUUUAGCUGUUUUUUUUUUGCGAGGAAUUUAGCUGUUAUUCAAAUAGGUCUAUCAUACUCUUGAAGAAUCUGAAAUUUUCCAAUGUGUUUGAGAAAGCAGAAGAAUCCGAGUAAAACAAAGGACAUCCGACUAUAUCAUCAUAACUCGUUUUCCAUUCCUUGGAUAAAAUGGACUAAUAGAGAUCAUUCAUGAUUAUAAUGGAAAGGAUAAAUCAGUGAAAUAUAUCAGAGCUUGUGUAUAUAAAUUUGAACUAGGGUUGCAAUCCAAACCAAGAUGAAGGAAUUAGCUACUAGGGGUGUUUUGCCAAGGUCUCGGAGGGGCAUUGCUAAUUAAUUAUUCUCUUUUACAAGAUGUAACCAAUGCUCGUUGAAUAUAAGUUGUAACACAUAUUUUGUGCAACUCGACGGAGCAAACCGGGCAGGAACCCGUGCCCCUAGUUAAUAUUACAAGUUCACUGAUAGCAACCAAGUGCUAGAUUGAAAAAUCUGAUGCGUUCAUCUUCGAGCGCAAUGGAGACAAACAUUAGACUGAUCAAAUCUCACAUAUUUUUGGGGCGGAGAGAGUAUUCAUCUAAACUGAGCUGAAGAAUGGCUAAGUUCACUGUUAUCUCUCUCUCGCCUUUUUCUUUUUGAAAUGAAUGGCAUGAUCCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
237
NEP:
86.5%
LE_num:
LEP:
1.82%
ME_num:
MEP:
10.22%
HE_num:
HEP:
1.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.97
Avg Expression:
50.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
Tip: Osa-phasi11g0552 is not a differential expression ncRNA. |