RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi10g0487

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XR_003239106.1

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

1372

Sequence:

UCAAGAGAGAUUGCAGCAACU

Length:

21

PHAS Gene Name:

LOC112936693

Chr:

Chr10

PHAS Transcript Annotation:

uncharacterized LOC112936693, transcript variant X2

PHAS Transcript Sequence:

UUUCACUAGUGGCAUUGCAACCCGUCAAAGAUGUAAAGUACUGUGAAAAAAAACAAAAUUUAUUCCAUUCUAGCUCAUUGCAGUUGCAUUCAUCUUACAAAUUCACAAAUCACAAAAAUCAUCACAAUCACACAUCUGGGCAUAUCCAAACACACAUCUGGGCAUCACAAAAUCAAUAUGAAGCGCAUCACAAAAUUAAUGAGAAUAAAACAGAGACUUGCCAUUGACGAUGAAAUCCUAAAGCCGUUGUUGCCAAGCUCGACGCCGGAGGAGGAAGUCAACGUCAAUGGUGCUUCGGCGGUCAUCGUCGCUCGAGUAGAUCUAGAGGAGGCGACUACCGGUGACCUUGGGGCAGAGUGCGAAAGAGGAGGUGGCCGGAGCAUGGGGGCAUCUAGAUCCGGUGGUCUCCAACCACCUUGAGAUCGGAUCUGGCACCAAGGAGCUCGAGGUGACGGAGAGAUAGCGGUCGGCGACCUUGGGACGAAGAGAGGAGGCGGCGACUAGAGCAUGGGGGUUGUCCAGAUCCUGUGGUCCCCAACCAUCUGGAGACCGGAUCUAGUGCCAAGGAGCUUAGGGCAGUGAAGUGACGGGGGUCGAUCGGCGACCUUAGGCGGUGGGCGAGGGAGGCGGCAGCCCCGAGCUCAUGGAGGCCAGCAGCGAGUGAAGGAGAUGGCGACGCUUUGUUUGGUUUGUUGUAAUGUGAUCAGUUACUGUUUGGUUUGUUUGAUGCCAAAAAUGUGUUCACACUUACAGAAAUCAGACUCAAACGGUGCAGAAGAAGUCCGUUACUGCCAUUUCCUGUUUCAAAAGUAAAUGGUGAAUCGUAAUGAUGAGCAAAUAAUGAGAAGUGACAAGGUGACCAUCCCAUAUAUAUUGCAGAUUGGGGUGUGUAUGCUCAUAUUGAUAGUUGGCAGAAGUGAACAAACAUGACCAUUAUAUUGCAAAAACAGAGAGAGUUCAGCUAGGCUCAGUUGACUGUACAAAUUAGGAGGAAUCCAACUUCCAAUAAUCUAUGCGGGUACUGCAAGCUCAUAUAUAUGACAAGGUUUGGGUGGCUAGGAUUGGGAAGCAUCAGGAAAUGAAGAUUAACCACAGCUUUGGAAAGGUAGGCAAAUCAGCUAGUACAAUAUAACGCAUCUUCUAAUCUCAAUUAUAGGUUCAUAUAGCUGUGCUUCCAGCUCUUGAUCAAGGAACAGACGUUGGAUGUCCAUGGCCUAUUCGGAAAGCAUUGCAGGAACCACGAGCGCUGGGAUUAUCUCGGAGCUACGAGCCUCCUACACAUUCAGUGAUUGGAACUCAAUUGCUCUUGCGGAAUGAGGACGCGAGCCUUCUGGAAGCCGCAGUAUAUCACUGUUCCGUGAGAUUUGUUGGAUCAAGAGAGAUUGCAGCAACUCAGAAGAAUUUUUGUUCUCGAGAAACUGGCAAGAUAUCUGCCUUGAUUUGUAUUAUGGAUGGUGCGAAUCACAUGACCAGAGUAGUAUCUAAUUGCUGUAUAUUAACAAGGUUAAUUCUCGUCACAAGACAUAUAGGCAACUCAAUCUGUGUGAUGUACAGAAUUUUAUCAUGAAGGCAACUCUUUUUGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

230

NEP:

83.94%

LE_num:

4

LEP:

1.46%

ME_num:

12

MEP:

4.38%

HE_num:

28

HEP:

10.22%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.97

Avg Expression:

260.20

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17-8.411516343502614.16144864167839e-05
2PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17-7.037331415981950.0334480995980421