RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi10g0398

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XR_003238889.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

5767

Sequence:

CCAGUUUGUUGAGUUCAGCUG

Length:

21

PHAS Gene Name:

LOC112936606

Chr:

Chr10

PHAS Transcript Annotation:

uncharacterized LOC112936606

PHAS Transcript Sequence:

UAAUAUUGCUUCAAAUCAAGGAGGGUCACAAGAGGGGCUCUAGAGCCACAGCAGGUGAUGGAUUACAGCGUUCAGUGGAGGAGCUUCAAACGAUACCGUUGAAUUAGCAUACUUCUGAAAAAAAAAUCAGUUCUACAAAUUCUUAUUUGGAAUACUGAAUAGGAGUUUAUCAGUUCACCGCGAUACUGAAUAAUUAACUGAAAACCAUUUUAAUUUCUCGGUGACAAUGCCUACGAAAUUGUACUCUUUUUUCCAUAGCACCUGUAUAAAUCAGAAUGGAUGGUAUUUCAAAAAUGUAUUAACCGACUAGAUUGCUCCCAAUGAUAAAAGAACGCAGACAAAUGUAGGUUACUGUGCUUCUAUUACUUCUAGUCAUGUUCUCAAUUCCCAGCAAGGGAUUGUUUGUGCAACCAAGAAUACCCUCAAUCUCUUGUGAUGGGUUCAUAUUAUUAGAGAUCGAUCAGAGCCUAUCCUAAGUGACCAGCUAGAUACACUCAAUAUAACUGAGGUGAAUAAAAGGUAAAAACCAUGCCCGAAAAGAGCCAAUCUCCUAAAGGUCUCAAAGUAACUUGAUCUGAAAUAAUUGAGAACCCAUUUUUUUCCCUGUUGAGCCUCCUCACAGUGCUAGAGAAAGCAUCUUUACUACUUGUUUAAAACCCUCUUUAUUCUCGGGUUUAGAACCCUCUUUAUUCUCGGUUGUAGAAGCCGAGACUAGUAAAGCGAGACUAAAGAUCGAGAUUUUUAUUAUUGGUUGAAAGAACCGGUACUAAAAAUUAUUAUCAGGUUUAGAACCCUCUUUAUUCUCGGUUGUAGAAGCCGAGACUAGUAAAGCGAGACUAAAGAUCUAGAUUUUUAUUAUUAGUUGAAAGAACCAGUACUAAAGAUUAUUAUUGGUUGAAAGAACCGGUACUAAAGAUGCAUACUAAAGCAAUUUUAUUAUUGGUUGAAAGAACCGGUACUAAAGAUGCAUACUAAAUCAUUUUUAUUAUUGGUUAAAAGAACCGGUACUAUAGAUGCAUACUAAAUCAAAAAUAAUGUGUAGGAUGUAGGACUUGAACUCAAGAUCUCUCACCUAAGCCCUCACACAUGUUACCAUCCCACCUACUACACACAUCUAUCUUGAAUGGACAUGCUUUCUUUUUGAACCAACUUUGUAGACACUAAAAAUAUCUUUAGUCCGUGUUUCAUUUUUAGUACCGGUUGGUAACACUAACCCCGACUAAAGAUCCUCUAUUUUUAGUCUCGGUUGGGGUUACCAACCGGUACUAAAGAUACAAUUUUAGUACCGGUUGGUACACCAACCGAAAACUAAAGAUAUUUUGGGACUUGGACUAUUGGGAAACUAAAGAAAUUGAAAUUUUUAGUACCGGUUCUAAAUCUAACUGAAAUAUUUGUGUUUUGGGUACCACGAUAAAAGAUUGGUUGUCCAGUAGUGUCAGCUAGUGAGCACAUGCAAAAUCAUGCACGAUUGGCCCCAAUUUCCCCCUAUAUAAGACAUAUACACACUCACCAUCUGAGAAAAAUAUAUAGCUUAAAUCAUACAUGUCGUGAAAACCUAUAAACUAUCAUUGGAUUUAAAAAUAGAUGUUUGAGAUUUAUCCACGUCAUCUAAAAUAAUUUUUUAUUACUAGGAAUCUAUUUUGAAUCCAACGAUAGCUUCCAUAUAUAUUAAUUUUCACUGCAUAUGUGGUUUGCACUACAUAUUUUUUCCCCUAUCUGUUCGAAUCAGAUCGAGCAGUGUUGAGCACCUACACACAGGUGGUUGGUCAGCCAGUGAGCACUUGCAAAAUCAUGCAGGAUUAUUGGGCCCCAAUUUCCCCUCUAUAUAAGACAUAUGUACACACACCAUCCAUUCUGAUCGAGCUGUGUCAAACUUGAGAUUCCGAUAGUCAAGUUUGUUGUUGAGUGGUAGUGAUGUUAGUUGCUCGAUCAAGAUCGAUCAGCUAACAUAUAGUAUUGUACACCCACUGUGAUGUCAUCGCUAGCUAAGAUUGGAAGGCAUGGGGAACUGAACCUCACCAUAGAUCUCCACUCCAUCAGCUAACUUCAGAUCGCAUGCUCUCGCCGUCGAUCCUUGUACCUCAAAGAACCGUUGCAAAAGUAGCGAAAUUGUUUGUAACCCCACUCCUUUGUCACUUCCAGCUCGUAUCUUAAGGAAGGGUAGACGACGAUGAUGGUUUCCUGUAGCUGUGGCAUGUUGUGCUGUGGGUCCAUCUGGGAUUGGGAGUAAAAGAUUGUGUAAACUAAUUACUGCUACAUGCGUAACCCCAAUUCUUUGUUACUUCCAGUUGAUUGUGUAAACUUAUUGCUGCUACAUCUGAAAAAUAUAUCCAACUUCAUGAAUCUGCAAAUGGAGUAAUUAACUACAAGCUCCUACAGCAGGGUCUGGGAGUGUAGGAUUGGGAAGCAUCAUGAACAGAGGAUUGACUGCUCGAGAUGGGGUCUUUGGAGAUGGCGGCAUGGCAGGAAAUGUAGGAAGAGGUUGCUGCGCCUUUACCCCGUAGGUAGCUCGAUUCCUACAUUUUGGGCCAUCAUUACCUGCACCUGAACGAAACUAUUACUGCCGUCAUUGUAUCCAGUAUGAAACUGUUUUAUCCAUCUGAUGCCUUCAAUCCUUCUUUUUUCCUUCAUGUACUUCACUGAAAUUGAUCUGGUAGAUUAAACAUGACUUAGGUACUAUAAGAAAGCAGGGCUUCUUAUCAUUAAAAAAAAUGUAUUGAAGUAUAGUACAUUCGUGAUGAUAUAUCUGUUUUGAAGACCUAUGUAUUUCUGUACAAACUUCCAGAACAUUAACAUCUUUGUUAGAUUUUAAAUUAGAUUUAAGUGUUCUUCAGAAGUUCUCUAAAUGUUAGAUUUUUUUUCGAUAAUGGAAGCUUUAUUAAAAACUCAGUCAAAUACACCAAGAUGAUACAUUUCAACUGAGCCCACUCCCGGCCUCUGCAUAAAAUGCACACAGCCACACACAAAGAAAGACCUAUGAAGACCCCUCUCACAAAACAGAAAUAUUAGUGGCUAUCAAUCCGUAGACUAGAUCGCCAACCAUACUCCUGGGUAAAAAUCUCAUGUGCUAGCUGGUCCAAACGUCGCGAUACUACCACAAUAGUAUCCCGAAGACCCGGUUUGUAGAGGAUAACCCAGGUGCGAAGCCACCGGGUGACUAAAGUAAUAACCUGCAAAGGAGAAAACACCAUCUUGUUGUAAAAAAUUACCCCAUUUCUGCAUAGCCAAAUGGACCAACAAAGAGCUGUUGCGUCCAUCAAAACUAGAUUUCUCAUGUCUUUAGGAACACAUGUAAGCCAACGCCCAAACAUAUGAGUCACAUUUUGAGGAGGUUGUAAGUUAUAGGCCAAAUGAAUAACAGACCAAACCAAGCGAGUAAGAUGGCAUUGGAAGAACAAAUGUUGAAUGGUUUCGUCCUUAUGACAGAAUCUAAAUGUUAGAUGGAAAGUCUAAAAUAAAAGGUGAUGAGUGAAUGGUAACAAUUAACAUUAAUGGCCGCAUGCAAUAUAUCAGCUCAUGAUUUAUACAAACUUCAGCAAGUAAACCACAGCAGCAUGAGUCAUAGGAAUAACAUUGUGAUGUUCAUGCAUAUUAGAUUCAGUGAAGUGUACAAACAUGUUUUCAAACUGUUGAAAAUAAUAUGCAGCACUUGCAUUGUACUUGUUGGAACAAAAUCCAACAGGGAAUGAAUUAUAAGAGCUUAGAGCUAGCAGUGGAAAUUUUGUAUAUCGUUAUCCCCUGCGCCCUCACCGGGAACGAAUUAUAAGUCCCAUGAACGUAUGAGAAGUUACAAAGGUGCCUCCUGUCCUCGUUAACAGGUGCUAGAGGCCGAUAGGUGGCCCCAGCCCUUGGGGCCAAAAUGCUAAAAUCCUAGAGGUCCAAAAGGGUUGGUCGAAUUAAUUCCGGCACUCGGGAAAUCUCUUGGAUCCCGGAUGUGACUGGUCAUGCUGAUGCACCACCUGCAUCCGCCCCACCUGCUCUCGCCGCGGAGCGCCUUAGCCAUUUGGUGUGGGCAUUGAAUAUGCAAUGACUGGUCAAGUCUUGUCACCGGUGACGGUCUUUGGAGGCUGCCUCCGGAGGGGUUGCGCUCCACUCCACAAAUCCUAUGGGAUUCAAGUGGAGAUACAUCAGGAGCUUCCUCCGGAGGAGCCUUCCCUUUCUCCCGAAAGCGAAGGGCGAAGCCACUCCCCCAACAGUAUCCACAGCAGCAACCUACCCUUGAACUCUUUCUGAGGACUGUUUAGUCAUGGCCAGAUAAACUUGACAAUGUACUAGCUAGUUCAAGAUUUCCAGAUGGCUUCUUAUCAGUUAGCUGGUUGGAUUUCCUGAUGCAUUCCAAUCUCAAACACAACUGAGAGCAGCCUGUGUUUGCGUGUAUGGUUUUUUUUUUUUUUUUGACAUUGUUUGCAUGUAUGGCUGGCAUGAAGGAAAGGUGCUCUCAUAGGCAACAAAACUCCAUCUCUCACUUUGGACUAACAUGCCAAUUUACUGUGAAAGGUAAGGCAAGAGACAGGACAACUGAUGCUAGCAUUUGUUUAUAUAGUUGUAUGGUACCUCAGCUACUCAUUAUGUUACUUGUGUAAUUGAUUGAUGAAGGAAAUAAUGACUCAGUGUUCCAUUUGUUUUUGAAACAAUAGCUUUGCUAUUCAGUGAAUGAAAGUCUCCAAGCUUUCAGGUUUUUUAAAAGCACUACAGAUAUCAUACAGAGCUCUAGUGUGCAAACUAAUCUAUGCAUAUGGACAUAAUCCACAAAAGUUAUCAAUUUAUCCCCAUAAUGUAGCUUCUGUAUAUGGAGCUAUAACUGUUUCUAUUGAUUUAACCGCACCUUCCAGUCGUAGGUCAUACGUACUGUUCCUGAACAACAAUUAUAUCCAACUAUUAUGAGAUCAGUUUCUUUGUAGUUAGGCCAGAUAGGUGCACAAAGGACUCAACGAGGAUGAUAUUUUUAUCGGUUCGCACCUGUCUCUUACAGCUCAAAAUAUUUGAAAUGGCACAUGUAAAAUGGAUGAGAAACAAUGGCUAUAUCGAACUUUUGAGUAGGGUUGAGAUGCAUCAGGAUGUACCUUCAGACAUGUCUCGCCCAAAAUUCUAGUGCUUGCAAAUUUUCAAAUUUAAUUUUAUUUUGUCAACUCACCCGGUUCUUAAACACAAUAACUACUGAGCUUGCUUUCAGCUAGCUGCAUUUCUGAGACUGACAAAAAACAGAACUGCUGCACCAAUUGGAAAAGCAGGAUUGCAGGACGAUCAUUUGUCUGAAAGAUUCGGCUGACAUUUCAUUGCCUCAGGAAAACUCUAGCUCGUUAGCCCUGAUCAUAGUGAUAGCUCGUUAGGUAUAUCAAAUUAUAAUUAACAAGAAAAAUUGCAACCCGUUUUAUGAAUUAAGGCAGUGCAGAAGCAGUGGAGCUUCUUUGUUGUGGUCAGCCCUGCUUGCUAGCUAUAAGAGCUCAAGAAGGUUGUCAGUGUGGGGCGUCAAACAUACACAUAAUACUCGGAUACAUCAAGGAGUAUGUCAUGCUUCAAUAAAUUUUCUGAUAUUAGUUUUGACAUUACUAAGCUCAAUCUAGCUCCUAGAGAUGGGAGACAUUGGGAUGCUACUUGCUCCAAUGAGUGCACAUCAUGUAGUCCAAAAUCCAAUGACUGCUUACCAUGGAAUCCGAGAACGCAUCACUCCCCAUAUGAAGGCAAUACUUUCCAGAGAGCAGCGACAAGUUCAUCGAAAAAACAGGCAGGUGCAAAUGGGACAAGACAGCUGAACUCAACAAACUGGCCAGUUUGUUGAGUUCAGCUGUAGCUUCUUUGAUAGUUGUGACUAUCAACGGGCUCACAAAUUAGGAAUACAUAAACAUGUCAAUGUGAAAUUAAAGUGUGUUUUGAUUAUUAUUUUAUAAUAAACAAUUGGUAUAUAAGAUAAGUUGGUUUUGAUAUUGGGAGAUUAUUGGUGAAGUGAAGAUUUUACUGUUUCUGUGGGACAGGUCAGAUCGAGUGGUAAAAGGCUGGUCAAACCAGUUAACCCGGCCCGAUGGUCUGGCCGGCUAGCUCUGUGUCGGUGUUAGAUUUGGGUUGUUUAUUUAGAUACGCAAUUAUCUUGGGAUCAUGACUUAUAGAUGAUUUCUAUGCGUAUGUAAUACAAUUAUUGUGACAUGCGACGCGACGCGAAGGACGGUCAAACCGACAUUAUCUACACCAGUCAGACUGAAGCAAUCAGACCAAUCUCUAUUGGCUUCGAGGGUAACUUUAGUUCUACUAAAAGUUUUUGGUUUUUGGUAUUCCUACCAUUCGCGCCCCCCUCCCCGGUUUUCCAUUUAUUGGAUUAUGUUUGUAUAUUCCAAUAUCAAAUUACCAUAAACCCAAUAAACUCUAAAAUAUCGAAUUUGAUUUGUCUAUUGGUUUUUUGCGAUCCAUUCGAUUUGGAAAGGCGUUUCUCAACCACUAAUUUAAUAAACAAACAACUAUAAUGACUAAAACGAGUGCCAAGACCCAUCACGGACAGACUUCUUCUUCUUCUUUUACCGAGGGUUAUUGGGUUUUACAUCUGCUUUUGUUACAUAAAGAGACAUCCCUAAAUUAUAGCACUAUAAAUGUGCCCUCUCAACCAUUAGUUGCCUCUAUCGUUUCCUACACCGGGAAACGUUUCAACCUUGGGCUAGUUUAGUUCUCUAAUAGUUACAGUUAUGAAUUUAGGCUUGGAAGGAUUCAGAAAGUCAAAUAUGGCAACGAUAUUCCAAUGUUCGAUCAAGUCGGAUAUGAUAUGCUCAAUUAAUGGUCUAGCCACUUCUCAUAUCUUUAGUGGCACAUUUACUGGCACAUUUGUUUCGUUUUUUCACUGCCAUGUUGUAUAUCUUGAAAAUUAUUGUUGCAUGUCAUGUACUGCUGAUUAUGUCUUAUGUUUCUUGACAUGACAGUUUGAUGACUUCUAUAAAAUCACAAUAACUAUUCAUGUUGAAAUAUUAUCCUAAGAAAAUUAAUUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

261

NEP:

95.26%

LE_num:

0

LEP:

0.0%

ME_num:

13

MEP:

4.74%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.97

Avg Expression:

3.41

Tip: Osa-phasi10g0398 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi10g0398 is not a differential expression ncRNA.