Osa-phasi09g0555


Function Link


Basic Info

Source:

XR_003238746.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

2406

Sequence:

UUUGAGGCGAUGACUGAACAA

Length:

21

PHAS Gene Name:

LOC4346703

Chr:

Chr9

PHAS Transcript Annotation:

glutathione S-transferase T3, transcript variant X4

PHAS Transcript Sequence:

GAGUGCCACAUUCCGCCUGAACCCCACACCCGGAUUCCGCCGUCAGCCAAAACCCUCGCCGCCGCCGCCGGCUGCAUGCGUGGUACCUCGGCACCGGAGAACUCCCCUGUCCUCCUGGCCGUCCGCGCGUAGCCUCCGCUCUCCGACGCAGCGCCCGCCCGCCCGCCCGCCCGCCCGAGCACCGGCGGCCCUUCGUUUCUCCGGCACCUCCGCCGCCGCGCGACGUCGGAGGGAUCGCAACAGGAGGCCAGAACACAAGAAUUCUGCUGGAUUAGGGUUGUUGCUCUCCUCCAAGUGGCAUCCAACGGAACAGUAAAUGAAAUUAGAGCUGAACAAGAUAUCUCUUGGGUGUAUUCUUAUUUAUCUGUUGGGAACUUCAACCAAAUAGGUUCUCAGAAUUGGCUUCAAAGUUCAAACCCAUGUGCUUUCUGCUCGUUUGACAUACCCACUAUAUACAUUUCACACCAUUCCACUCAUUUGCAAUGGGGCCUCACCCACCUAGUAGUUAUUCAGAUAAAAAAACUUGCCAAAAUGUCCCACCAGAAAAACCCAGCUCCACGAGUUUCUGCCAUCCACAAUUUCCGCAGCACUUACUUUCACAUCCAGCAUAUGCAAUGAAUUUCCCUUUCCCGCCGUUUCCUCACUAUCCUCCAUACUCGCAAAAUUUCCAAUAUGCUGUUCCACCACAAUAUGCUCCAUACUCAUUACCGCCACCUGAUGGAGCUAUGCCAUCACCAUAUGUACCAGCUACAGUUAUGCCAUCCAAGGCACCCUCUGAUCAAGGCACCCCACAUUCAGUAACUGGUCCAGGACAACAAGAUGAUGACGAUGCUGAACCUGAGAGGACUGCUAGGCGACUAGCAUGGACAGAAGAGGAAGACAUUAGAUUGAUAAGCACUUGGUUGAUUAACUACAAGACUGACAAGUACUGGGAUAAGGUUGCAGCAGAAUACAACAGUGCAACCCCCGGAGCUCGGAGAAGGGAAGUGAAGCAUUUGAAGAACCGCUGGCAGAGGAUGAUCAAUAAGGUGGCACAUUUCAAUGAUUGUUGGUGCCGGGUCAUGGCAAAAUAUCCUAGUGGCCAGUCAGAGGGCAUGCAACAGAUGGACAAAACUUGGCUGAUGUAUAAUAAGGAAGCACAUGUGAUGUAUCUCGAAGAAGCGAAGCAUAAGUUCACCUUUGGCCAUUGCUGGAACGCUGUUUGGGACCAACCCAAGUGGAAAGAAUACAUCUCUUCUUUCUCCGCAAAAAGAGUGAUGCGAUCUGAGUCCGGUGGUUACGUGUCAUCUUCGGAAGACUCUGAAGAUAUGCAAGAAGGAAAAUGCUUAGUGGAUCCUCUGGACAUGCUUCCCAAGAACCAUGAAGAUAUGACAGAAGUCCAGCCGUCUGUCUCAAAUCAAAAGAAGCAAUUAGAACUAUUGACAGCUGAUGCGUCGUGGCCUAUUGAAUUUCAGCUUGGGAGGCACCAAUUGAUGACUGGAACAUCAAAAUUGAACGAACAUCAGCAGGGGGUGGCAGUGAGGGAUGAAAUGCUUGAAAAAGAAUCGGGCCCACAAGAUUUUGAGGUGCUAGACAAUGAGAGAGUGGCAAGGGAAGAUGAACCUAAAAAAGAAACACAGCCUCAUCAAGGUUUCAAGGCGCGAAAGGUCAAUCGGAAACGUAAAGGCAAGGCAUCAUCUUCUUCAUGUGAGGUGCAGGAAGACAUCAAACAUGCAUUAUAUCUUCAGACCAUGCUUAACAAUGAUCGUGAGAAAAUGUCAGAGGUACAGCUCCGCCUCUCGAAAGAGCAGCUUGAAUUGGCCAGAAUAAAGCAGGAUGAAGCGAAUGUAAAGAAAGAAACAGCACUUUACAUGAAAUACACAGAGCUGUUGCUGGCAGACACUUCAAGGUUUGAUGAGUUUCAGAAGGCAGAGUAUGAGAAAGCAUUGAAGCAUAUAGGAGGGAUACUAUUUAGCAAGGAUGUCAAUUAGUGCCCUCGCAACAAUUUAUCUUAAGCAUGCAUUUCUGUGCAAAUAUCAUCCCAACAACUAGUAAUAGAUCGUUUUGUUCUACUUAACUGAAGGAUUGCCUCCACUAACACCUGUGUCUGUGUUAGGUUUAAUCAUCUCUAGCAAGAUUUAACAGAGAUUAGUACUGAUUGAAUCGUGGAAGUGAUGGAUCAAUAUGUAUUUAGCUAUUAGUGGCUUAUCUAAUUUGCAACUGACCUGUGCAAAGAAUGAACUAGUGGCUUGUCUUGGAGUGAUGGUUGAAGGCAAAUUGCAAAUACUUGAAAGUUAACCCAAGCAGGUCUUACAUUGUUCUCUGCCACCGAAAACUCGCACGCCCUACAUUGCUGUGUUGGAGUUAUCACUUGCUAGAACAUAUUGGGAUGCAAUCACCCGUCAAUUGUUCAGUCAUCGCCUCAAAUUUGAGGCGAUGACUGAACAAUCACACAGUUUUUCCCGUUGCAUCUCAUGCCAACAGCAGAAAAAAAUUGCUUCUCGACUGCACAAAAGCAAUAGGUCUGACAGCUUUUAUCUUAUUUCAGAUAAUGUUUUAUGGUGGCUUGAUUAAUUCUGUGGUUCUACACCUAUGUGACUAUUGUGCUAUUUAUUUUAGGGUAUGCAUAUGAAAUAUAUGUAGGUGUCACAUCGUUAGAAGGAUUGGAUUCUGUGGUUCUACAACUGUGACUAUUGUGCUAUUUAUUUUAGGGUAUGUAUAUGAAAUAUAUGUAGGUCAGUAGGUGUCACUUCGUUUUUUUUUUUUUUUUUUUAGAAAAUGGUGUCACUUCGUUAGAAGGAUUGGUUUGAAUGAAUACAAAGUAGCUAGGUGGUUUAAUGUGUUAAUUUUGACGAACAUUUACACCCAUCCAGUGCCAUCAGUAGCAUCUGAAGUCCAGUAGAUGAGCUCUGCCUGAAGCCCCUAAAAAGAGUCAUUUUGAAGUUUUGAAGGGAGGUUUUUCCUAUACACUAUCCAACCCACAAAGAGCAAAACACAUUUUCCUUCGAGUACAUAAUGAAUUAAGCGAACCAAAUUUCCUACGAGAAUACCGCUUCACAACUUGUUCAAGCAGAUAAAUCUCUGAAUGCUGAAAUCCAUUAUGCAUUGUUCAGCCGGAAAAAGAACAAUAAUGAGAUUACUCCUGUACAGUCUCUUGCAUAUAAACCUCUAUUAUUUUAAUACACUGUAGUAGGAGCCUCUUCUGCUGUUUCUCGUAAAAAAAUAAUCAGAUGUACUGCUCAAUAACAAGAGAAAUUGCCUUCUUACAGUUUUUUGGCCCUAAUGAUGGAGUCAUGAAGUCGUCAACUUCUGGUGCAUAGAGGACCAUUCAUACAUAGCCUCAUUUGAUUGUCUAGCAUCCUUUGGAACACAGGAUUUUUUUUUUUAAUUUUCAAACAAGGAAUAGAAAAAUGCAGGAUUGAGGUGCCAUGACUUGUUGAAUGCCAUACGAAUUGUACAGAAUGCUGUUUGUAUGCCUCACGGAAAAAAAAUACAGGAAAUUUAAUAAGAUUUAUAUGUUGAUUUAUUAGAGAGAGAAGGGAGUAAGAUAGAGAAGAAGUGCAUUGGAGUUCUCGAGGGGAUUUGUAAGGCAAGACCAUAUGUUAGAAUUCCUCCAAACUGUGGAGGAAUUUUUACUAUCCUUAAAAAUUAUUUUGAACCAAUUUCACAAUAUUUAUUGAUCUCUCCUAGGAAUUUCUCGUUUGGAUCGAAUUCCUCUAGUUUUCCAAUGGAGUCCCUUCAAUCCAAAGUAGCCCUUAGCCAUUCUUGUAUAAACUGUGAUCUCCUGAUGUCUCCCAAGUCGAAAACAACAACUACAUGUAUAUAAGUAUUGCAGAGCUGUAAUUCUUGAGAUAAAUCUUUUGGAUUCACAUCGUUUUAAGCUGAAAGAGUGGGAAAAUAACACUCCAACUUGAUUUUAGAGAGAGCACAAGAUGCCAAAAUGGCAGAUUGGGGAUGCAAAUAGUGUAAAUAAUAGAGAAUGAUGGAAUUCGUUGAACUGAUAUAUUGAGUGUCUCAAGAUAGGUAUAUAUAGAGGGUAAUUUUACCAUCCUUAAGAAGGUACCAUGAGGUUCUGUAAAAUUUAGUACCGCGAGAUACAAAAAUUUAGUGUAAAAUUUAACUAACUCCCGCCAGCCGCUCUCCUUUCCCCCGCCGGGAUUCUCAAUGAGUUCCCCACCGGCUACCUGUCAUUGUUGUGCGUGUUGUCACCGACCCAUCUGAUUUGGAUUCGGAGUCAUCACCAACUCUCCAUUUGGUUAAGAAUCUGAAGAUUAGAACCUCAUCACCAUUUGCCAUAAUCCAUUCAAGCAGAGCAGUUGCUAUGAAGUCGAUACUUGGACAUGCUGUCCUGAAUUUUGUUGUUCUAUGAUGGCUUCCAGAAAUUGCAAGAGCACAUUAUUGA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

240

NEP:

87.59%

LE_num:

4

LEP:

1.46%

ME_num:

18

MEP:

6.57%

HE_num:

12

HEP:

4.38%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.98

Avg Expression:

108.19


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi09g0555 is not a differential expression ncRNA.