Osa-phasi09g0336


Function Link


Basic Info

Source:

XM_015757154.2

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

1946

Sequence:

UGGUGAUCGCUGGCAGCUGCU

Length:

21

PHAS Gene Name:

LOC4346635

Chr:

Chr9

PHAS Transcript Annotation:

coiled-coil domain-containing protein 102A, transcript variant X3

PHAS Transcript Sequence:

UCUCUGCCUCGGCACCACCCACACGGCGUAUCGCUUCUAAAAAAAAGAAAAAGAAAGCGCGAGUUCGAGCUGAGGGCCAUGAGGAGCGGUGGCGGUGGCCGAGCAACUCGCCGCGGGCAGGGAACAGGGCCCCGGCGUGCCGCGCCAGCGCUACCGCGGAGCUCCUGCGAUGCUCCACCUCCGAGGUGGGACGGCCCCUCUGAUCCGGCUCCUCCUCUCGCCCCUUCUCUCACGCCCAACCCUAACCCGGCUAUGGCGCCCUUGUUGCCGGCGCCUCUCUUGCUGCCGCUGGUGCCACAUCCGAGGGAGCAAGAGCAGCAGGAGAAUGCUGAGGAAGGAGAAGAACAGAGGCCGAGGCCGACGCCGACAACCAUGGAAAAGAAGGUUGUAGAGCCUUCAAAGAAGAAGAAAUUUGUGGAUUUGAAAUCAAUGUGGGGUAGAGCUGAAAAGAAACUGAAGUCUAUAGUUGAUAGCAAUAAUAUUUCUGAGCAUUCAGCUAGGAGGAAAGACCCUGAACCUGCUACUAUACAUGCACCUGCAACUAAAGAGAUUGGGUGUAGUAGAGCAUGUGAAGUUGGAUUUGCACAAACAGAAACUCAAGUGCCCUAUGAAAGUAUAGAAGUAUCAAGACCUCAAGAUGUAGAUGGCAGCAUAGAAGUAUCUAAACCUCAUGUUGCAAAUUCAGAAUCUGAAGAGGAAGAUGAUUGGCUAGAAGAUGUUGAUGAGGAUGUUGGUUUUCUUCCACAUGAUCCUGGAAAGAGGAUUGCCAUCUCAGAUUAUAGUGUGUAUCAGCAAGAUGAAGUGAGGAUGAAGUAUAUUGCACUUGGGCCUUGUCGACCACCACUAGAGCAAUUUCCUCAAAGAAAUUGUGGAGAUGACUUAAACACAGCUUUGCAAAGGAGGGCGCAAGAUAUUGUGAAUGCGGUUGAGCUCAUUGUUUUGACAAAGAUGCAAUUGGAGAUGUUGCGGCAAGAUGAUGGGUGGGAGAAUUUUUUAAAAAAAGUCACCUCUUUUUUAUGAAGAACGAAGUCAAAGUUCCUCAGAUGGAUGCUAGGUACAAGCCGGUUGGAAGAUCACCAAGCUUCUUUGGUAAAGUGCAGAAUCUUCACCGCUUUAAAAUUGAAAUGUUUUUGAGUGUUAUUGAUAGACAACUUAGAGAACUAAAUGACAGAUUUGAUGAGGUGAACACAGAUUUACUUGUUUGCGUGGCUUCAUUCAAUCCCACUAAUUCAUUUGGUUCUUUUGACAAGGAAAUGUUGGUUAAACUUGCACAAUUCUAUCCCAAUGACUUCUCAGCCAAUGACAUCAUGCACCUACCUAUUCAGCUUGAUCGUUUUAUUAUUGAUAUGCGUAGAGAUGAAAGGUUUAGAGAAGUGAACACCAUUGCUGAACUUUCGGUCAAGCUUGUUGAUACAAAUAAGCAUAUCAAUUACACACUUGUCUACAAGCUACUGAAAUUGGUGCUAGUCCUUCCUGUAGCAACUGCAAGUGUUGAAAAUGUAUUCUCCACAAUGAAUUAUGUCAAGAACAAGCAAAGAAAUAGAAUAGGAGAUGAAUACUUGAAUGAUUGAUUGGUAACAUUUCUUGAAUGAGAUUGUUUUCAACAAGUUCCUGAUGAAGACAUAAUACGUCAUUUCCUGUCAAUAAAGGCUCGUAGAGUCAAGUUGUAACAACUUGUGUUGAUUUUUCAGAACAUGGACAGGAUCACACUAUCUUAUAUAAUAUAUGUUGCUGAUGGGUAUCAUUCAAUGGCAUUUUCUUCCUCUGUAUUGGAUCCAAUCUUUAUGGUGGUGCAGCCAUACGCAAUGACGCCAAGAUUUCUCCAAGACAGAAAAGCACUACAGCACAGGAGUGUGACCUUGCAGUUUCCAGCCAUUGAUUAAUUCUAUCAGCGGGCUUUCUUGUUUGGACAUAACAUUCCAAGAAGCAGCUGCCAGCGAUCACCAUGGUGAUCGCUGGCAGCUGCUCAAUUGAUCACGGAAGCAACCUACGAGUUACAAUGGGUAGCCCAUCCACUGGAAUCCUGCAGCUUCCCAUUCCUAUGGCUUUUCUCUAACUUGCACCAGAGAACGCACAACCACGACAGACUAAAUUGAAUUACUCAAGCCCACAUUUUCAUUGAGGAGGUAUAGAGAGCUAGCGUGUGUUGUGAGCAAGCAGAACAAUGUUAUGCCAUAUGCGUCUGGUUUUGUAGGAACGCACCGCUUCUACUGAAAUUAAUAAUGGUAUUGCUAUAGUAGUUGAGCACGAGCAAUGCAAAUACAUGCAAUCUAUUUUGAUUUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

242

NEP:

88.32%

LE_num:

2

LEP:

0.73%

ME_num:

13

MEP:

4.74%

HE_num:

17

HEP:

6.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.99

Avg Expression:

91.26


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi09g0336 is not a differential expression ncRNA.