Source:
XR_001546521.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
680
Sequence:
UCUUUGCCCUCUUUAGUGCU
Length:
20
PHAS Gene Name:
LOC9271748
Chr:
Chr6
PHAS Transcript Annotation:
uncharacterized LOC9271748
PHAS Transcript Sequence:
CAUUGCGACACCACCAAUCUUAUUCUACAUAUUUCUAUCUUAUAUAGAACAACUAGCAUAGCUCUCGUUGCCCAGCCAGGUUGCCCAGCCAGGUUGCCUGGUGCACAAUGAGAGCUGGCUAGGGCGGACUCAUUCUGCUGUUGGUGCCCAACGAUGCUAGCUGCUACUCAUACUAGUGAAGCCUGCCAUGGUUCUGAGAAAUUUUUGGAUACUCCGCUGCGUAGAUAUGCACUAAAAGCUUGUAUGUUUCGCUGACUACAUACUAUGGAUAUCACCUGUUUGACAAGAGAAGGAUUACAUACCACGAUGAAGAUGAAUUGGAACAUGAUGCAAGUGAUGUAGCGCCCCAUAUAGGAGUCACUCAGGAAAGCACAGAAGAGGGAGAAGAUGUAGACGGUGCCCAUCCACAUGCUGACGCUAUUGGCGGCCUCGGCGUUCUCCUGGUGGAGCACCUGCCUGAGGAACACCACCAGGCCCACGGCGACGCCAAAAAAUGCAAAGUUGGCCAACACAUAGCUCACUGCAUCGUCAAGUAGAGCUGCUUAAUCACUGAGGUAUAUACAUUUAGUUCGCCUUCUUCAGCGUUGCCAUGGACCUGGUGAUGUUCUUCCGGCGGGUGCCCCACCAAGAGAACGCCGUGGCCACCAACAACAUCAGCAUAUGGAUGGGCACCAUCUUCAUCUUUGCCCUCUUUAGUGCUUUCCGUAGUGAUUCCUAUACGGGGUGCUACUUCACUUGGAUCAUGUUACAAUUUAUCUUCAUCGUGAUAUAUGCUCCUUCUGUUCUCACAUAGGUGAUAUCUUAAAAUGUAUGAGGCAUAUAUACUUUCUACCUAAUAUUAUAAAGUAUAUGCCUCUAUAUAGAUCAAAUAAAGCAGAAAAGUCAUUGUUAUUACCAAUCGUGUACUUUUGUUCUAAACAUCUCAACUAGUUUAAAGUAUUUGUCUCUCUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
248
NEP:
90.51%
LE_num:
LEP:
0.73%
ME_num:
MEP:
4.74%
HE_num:
HEP:
4.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.95
Avg Expression:
180.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -13.1266967533483 | 1.53752298839262e-10 |