Osa-phasi06g0296


Function Link


Basic Info

Source:

XR_001546521.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

411

Sequence:

CUGACGCUAUUGGCGGCCUCG

Length:

21

PHAS Gene Name:

LOC9271748

Chr:

Chr6

PHAS Transcript Annotation:

uncharacterized LOC9271748

PHAS Transcript Sequence:

CAUUGCGACACCACCAAUCUUAUUCUACAUAUUUCUAUCUUAUAUAGAACAACUAGCAUAGCUCUCGUUGCCCAGCCAGGUUGCCCAGCCAGGUUGCCUGGUGCACAAUGAGAGCUGGCUAGGGCGGACUCAUUCUGCUGUUGGUGCCCAACGAUGCUAGCUGCUACUCAUACUAGUGAAGCCUGCCAUGGUUCUGAGAAAUUUUUGGAUACUCCGCUGCGUAGAUAUGCACUAAAAGCUUGUAUGUUUCGCUGACUACAUACUAUGGAUAUCACCUGUUUGACAAGAGAAGGAUUACAUACCACGAUGAAGAUGAAUUGGAACAUGAUGCAAGUGAUGUAGCGCCCCAUAUAGGAGUCACUCAGGAAAGCACAGAAGAGGGAGAAGAUGUAGACGGUGCCCAUCCACAUGCUGACGCUAUUGGCGGCCUCGGCGUUCUCCUGGUGGAGCACCUGCCUGAGGAACACCACCAGGCCCACGGCGACGCCAAAAAAUGCAAAGUUGGCCAACACAUAGCUCACUGCAUCGUCAAGUAGAGCUGCUUAAUCACUGAGGUAUAUACAUUUAGUUCGCCUUCUUCAGCGUUGCCAUGGACCUGGUGAUGUUCUUCCGGCGGGUGCCCCACCAAGAGAACGCCGUGGCCACCAACAACAUCAGCAUAUGGAUGGGCACCAUCUUCAUCUUUGCCCUCUUUAGUGCUUUCCGUAGUGAUUCCUAUACGGGGUGCUACUUCACUUGGAUCAUGUUACAAUUUAUCUUCAUCGUGAUAUAUGCUCCUUCUGUUCUCACAUAGGUGAUAUCUUAAAAUGUAUGAGGCAUAUAUACUUUCUACCUAAUAUUAUAAAGUAUAUGCCUCUAUAUAGAUCAAAUAAAGCAGAAAAGUCAUUGUUAUUACCAAUCGUGUACUUUUGUUCUAAACAUCUCAACUAGUUUAAAGUAUUUGUCUCUCUUGA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

264

NEP:

96.35%

LE_num:

1

LEP:

0.36%

ME_num:

7

MEP:

2.55%

HE_num:

2

HEP:

0.73%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosperm

Tau :

0.98

Avg Expression:

19.14


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA-5.912069411767090.00566975549957893
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA-12.18281995873882.25549081256979e-11