Source:
XR_001546521.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
369
Sequence:
GCACAGAAGAGGGAGAAGAUG
Length:
21
PHAS Gene Name:
LOC9271748
Chr:
Chr6
PHAS Transcript Annotation:
uncharacterized LOC9271748
PHAS Transcript Sequence:
CAUUGCGACACCACCAAUCUUAUUCUACAUAUUUCUAUCUUAUAUAGAACAACUAGCAUAGCUCUCGUUGCCCAGCCAGGUUGCCCAGCCAGGUUGCCUGGUGCACAAUGAGAGCUGGCUAGGGCGGACUCAUUCUGCUGUUGGUGCCCAACGAUGCUAGCUGCUACUCAUACUAGUGAAGCCUGCCAUGGUUCUGAGAAAUUUUUGGAUACUCCGCUGCGUAGAUAUGCACUAAAAGCUUGUAUGUUUCGCUGACUACAUACUAUGGAUAUCACCUGUUUGACAAGAGAAGGAUUACAUACCACGAUGAAGAUGAAUUGGAACAUGAUGCAAGUGAUGUAGCGCCCCAUAUAGGAGUCACUCAGGAAAGCACAGAAGAGGGAGAAGAUGUAGACGGUGCCCAUCCACAUGCUGACGCUAUUGGCGGCCUCGGCGUUCUCCUGGUGGAGCACCUGCCUGAGGAACACCACCAGGCCCACGGCGACGCCAAAAAAUGCAAAGUUGGCCAACACAUAGCUCACUGCAUCGUCAAGUAGAGCUGCUUAAUCACUGAGGUAUAUACAUUUAGUUCGCCUUCUUCAGCGUUGCCAUGGACCUGGUGAUGUUCUUCCGGCGGGUGCCCCACCAAGAGAACGCCGUGGCCACCAACAACAUCAGCAUAUGGAUGGGCACCAUCUUCAUCUUUGCCCUCUUUAGUGCUUUCCGUAGUGAUUCCUAUACGGGGUGCUACUUCACUUGGAUCAUGUUACAAUUUAUCUUCAUCGUGAUAUAUGCUCCUUCUGUUCUCACAUAGGUGAUAUCUUAAAAUGUAUGAGGCAUAUAUACUUUCUACCUAAUAUUAUAAAGUAUAUGCCUCUAUAUAGAUCAAAUAAAGCAGAAAAGUCAUUGUUAUUACCAAUCGUGUACUUUUGUUCUAAACAUCUCAACUAGUUUAAAGUAUUUGUCUCUCUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
259
NEP:
94.53%
LE_num:
LEP:
0.73%
ME_num:
MEP:
4.01%
HE_num:
HEP:
0.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.99
Avg Expression:
225.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -9.18678263377435 | 3.72788536717408e-05 |
2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -10.335778658962 | 8.06424991450955e-08 |