Source:
XR_001546401.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
398
Sequence:
AUUGGACCACAGGAAAAACACAGG
Length:
24
PHAS Gene Name:
LOC4340271
Chr:
Chr6
PHAS Transcript Annotation:
pentatricopeptide repeat-containing protein At5g48730, chloroplastic, transcript variant X1
PHAS Transcript Sequence:
AUAAGUGUAGUAAAUCCUAAAUCUAUUUUAUUACUUAAUUACGGUUAAGUUCUAUCAUCUGGAUUAUAGUUUUUCAUGCUAACUGCUGGGAGAGAAAAAAAGGUUGUACGCUGUUUAAUUGUGUUAAAAGUGUGUUUGAGAAGAGGGGAGAAGAGAGGACUGAGAAGAAUAAGAGUAUUUUGUGUCUGAAAAAUAUGGAUCAAUAAUGUUAUUAACUACUAGUAUAAUUUUACUUCUUGACAAAAAACAAAGAGUGUUAACUACUAGUAUAAUUUUAGGGCUACUUUGAAUCGUAGGAAUGAAAAAGGAGGAAUAGGAAAAACAUAGGAUUCUGACAGGAAUGUGUUUGUAAAACAGAGAAUUGCAAAACAUAGGAAAAACACAGGAAUGAUCGUUUGAUUGGACCACAGGAAAAACACAGGAAUCGGAUGAGAGAGAUAGACUCAAAGGAUUUUUACCAAGAGGUUGGACCUCUUGCUAAGUUUCCUUCAAAACCUAUAUGCAAUAUGCAACAAGCCAUUCCAUCGGAAUUUUGUAGGAUUUGGAAAACUUCAAUCCUUUAAAUCAAAGGGUUACAUAGAAAAAUUUCCUGUAGGAUUUCAAUUCUAUGAAAUUCUUUCAUAAUUCCUUUGAUUCAAAGGGGCUCUUACUUCUCGACGAAAAACAAAGAGUUAGGCCUCCUUUGAAUUGGAGGAAAAAUGGAGGAAAAACAAAGGAAUUGAAAUCCUACACUAUUCAUGUCUUUGAUUCGUAGGAACGAGAAAAGGAAAAACGUAGGAAACUUUCCUAUUCCUACAAUUCUAGAGCAAAAACGUAGGAAAGUUAACAUCCACUCUAACCUCGGAAAACUUUCCUUGAGUCUAUCUCUCAUGUGAUUCCUGCAUUUUUCCUGCGGUCUAAUCAAACGGUCAUUCCUAUAUUUUUCCUAUGUUUUGUAAUCCUCUGUUUUACACUUGCAAUCCUACCAAAAUCUCGUGUUUUUCCUAUUCCUCCGUUUUUUCAAUCCUACAAUUCAAAUGGGCCCUUAGUAUAAAUCAAAUCCAAAUCUACCCAAAAUUGUCCGUGAAAUCUGCUAAACCUGUGGUGUUAAAUCUGGCUGGUUGCCUGUCUUCCAUAAGAGGAGAGAUCUGGAGCGUCGCUAUCUCAUCCAACGGUCACUUGGUGCCCCUCCCUGUCCUGUUACGCUUGACUACUCUCGUUGCCACGUCACUAAGCACAGCCUCAUCCUCUUCUUCCCCGCGCGGACGAAAAAUCGCGCCGCUCUCCGGCGCAAAACUGCAGCGAGGCGAGCUCGCCCUCGCCUCCGGCUACUCCGAGCCGCGCCGCAAUGGCCGCCGCGCCGGUGGCCUCCCCAUUCCCGGCGCUUCCCUCCUCCUCCUCCUCCACCACCAUCGCGGCCUCCACCGCCGCGCGCCGGUGCCACGACGCGCUGCUCCCACCGCCAGCCGCCGCGGGGCGCGAGCCGGCUCGCACCAGGGGAUCCUCCUCCUCCUUGGCUGGCGCCGCGGGGGAGAGGAGGAGGCGGCGAGGCGAGGAGGAUGGCGGCGAGGUCGAGGCCGAGGCGGAGCGGCGGCGAAAGGAGGAAGUGAACCGUAAGAUCGCGUCCCGGAAGGCGCUCUCCGUCAUCCUCCGCCGCGAGGCCACCAAGGCCGUCCUCGACAAGCGCAAGCCCGGCAAGGGCACCCGCCGCCUCCUCCCCCGCACCGUCCUCGAGGCCCUCCACGAGCGCAUCACCGCCCUCCGCUGGGACUCCGCCCUCAAGGUGUUCGAUCUAAUGCGCGACCAGGUGUGGUACAGGCCGUACGUCGGGAUAUACGUCAAGCUGAUCACCAUGCUGGGCAAGUGCAAGCAGCCGGAGAGGGCGCACGAGCUGUUCCAGGCCAUGGUGGACGAAGGCUGCGCUCCCAACCUCGAGUCCUACACGGCCCUCGUCUCCGCGUACAGCAGGAGUGGCCGCUUCGACAGGGCCUUCUCCUUGCUCGAGCAGAUGAAGGCCACCCCUGGUUGCCGACCUGAUGUGCAGACCUACUCCAUUCUCAUCAAGUCAUGCUUGCACGCCUAUGAUUUUGAGCGGGUCAAGUAUUUGAUGGAAGAUAUGGCGCGGGCGGGUAUCCGUCCCAAUGUCGUGACUUAUAACACAUUAAUUGAUGCCUAUGGGAAAGCAGGAAGGUUUGCUGAGAUGGAAUCAACUCUUCUGGAGAUGCUGACUGAAAAUUGCAAGCCUGAUGUAUGGACAAUGAAUUCUACUCUCAGAGCUUUCGGUGGCAGUGGUCAAAUUGAAACUAUGGAAAGCUGUUAUGAGAAGUUCCAGGCCUCCGGUAUCUCCCCAAACAUUAAGACUUACAAUAUUUUACUUGAUUCCUAUGGUAAAGCUAAAAUGUAUGAGAAGAUGGGAGCUGUGAUGGAAUACAUGCAGAAGUAUUACUAUUCUUGGACAAUAGUCACAUACAAUGUAGUUAUUGAUGCAUUUGGAAGGGCUGGGGACCUUGAACAGAUGGAAUAUAUUUUUAGAUUGAUGAAAUCUGAGCGUAUAAAGCCCAACUGUGUUACACUCUGCUCGUUGGUUCGAGCAUAUGGAAGGGCUGGGGAUGUUAAGAAAAUAAAGACAGUGUUGAGAAUCGUUGAGAAUUCUGACAUAACGUUGGAUAUUGUGUUCUUCAACUGUUUGGUGGACGCGUUUGGGAGGGUGGGGUGCUUGGCGGAGAUGUGGGAUGUUCUUGAUAUAAUGAAAUUACAACGAUGCAAACCAGACAAGGUAACCUGCACUACCAUGAUUAAAUGGUUUCUCAUCAAAGGAAUUGAUGAUCAUCGUGUUCAGUACCUACGGGACUUAAAAGACGGGCGAUCUAAAGAUAACAUAUAGGCACUAACACUAAGCAGACAAUGUCAGAACUUCAGUUUGCAAGAUGGAACAACCUGUCAGAACACUAAGCAGACAAUGGUGAUAUUUGUUCUCCGUAAUUUUCCAAGAAAGAUGGAACAACCUGUAAGAACUCCAGUUAGCAGAGACACAUCAAUCUUAGCCUGCUCUUUGUAGGUAGCUUCAUUGUUACUUAUUCAACAUGUAAUGUACACAACACAACAAUGAAAGUUUGUUUUACGAUCUUAACAAUGGAGCUAUUUGACUGCAUCUGGCAAAACUGCCUAUGGUUAUGGCAUCCCAUAAAUGAAUUAUGUCUUGAGGAUCUGAGCAAGAUUUUGCUAUCCGAGCAAACGGAUCAGGACAAUGAAAUAAAGAAGAAGGCCUUGACGAACAGUGAAUCUUAAGUGUCGGUGACCAAUCAGUUAGAUUGUGCUGUGCUGUUGUGACUUGAUGUAUGGAUCAUACAGCUGUACAUGAUAUUCAGUAUUGACUCGUGCAAAGAUGGAGAGAAACUUAAGUGGUUAUGAAUUACAUGUUGUAGACUUCUGUGUGCUCCCUUUUGAUUAUUCUAGCAUGACAGAUGAUUUGUUGGCAUUUCACUUAAAACAUUUUUGUGCUAUCAUUGCCCUGCAAAUAGAAAAGGAGAGAGAAUGGGCACCUAACAUAUGGACCAAGGAAUUGUUCUGAAGGAAGAUUCUCCAUGAGGCAUCAACAUUGAUUCGAUAAGAGCUUCAAAGCCUCAAAGAGAACUUUGUUCCGGAAGCAUUUAGAUUUUGGCAGCUUGGCACUGAACUGGAGCGGCUCAUUUUCAACAUCAUUUGUUGCUGCUGCAUGUCUACCUGGGCCCUCCUGUUGUAUGAACAUCAAAAUCUUCCAACCUUCACCAAUCAAUGCUACUACGUACUAUAUAGCAAAAUACUGUGUACUGUUAUGCCAAGCUCUGGCUAGUCUAGUCGAUGGCGAUGCAGCCGGAGCAACUGCAACCGUGCCGGGCCAAACACAGCUAAGUGCUAGCUAAACUGCACAGGAACUGAUCUGAUCACCUAUAAUUAUCUCUCUUUUUAGAACAUGAUCAUCUAUAAAAAUCAUGAUUUAUGUAUAGUGGGGGAACAUCUAAUGCCACUAUGCCACCAACCCGUGCACAGAUCACAUGAAUUGCAGCCCCUUUUUUUUUCAAGAAAUAGAGGUAGAAUAUACUAUAAUGAUCUGUUGUUGGGGUGGUUAAUUAAAUUGCUGAUUUGCUGACAAGAUUUGUACUAGAAGGAACAGAAAAUUCCAGAUAGAAACUCACUCAUUUUUUCCUUAGAAAAACAUAAUAAAACCAUAGUGACUGUUAUGAGUGAUGCUGAUGAAUGGCUGGCCCAAUAUUCUGCUAGGAAUUCAUAGUUAGGACUUGGAAUUUGGACUCUGCCAGUGAGCAACAACUGGCCAACGUGGGUCCGGCCAAACUAAAGACUCGGAGAAGAGAACACACUACUUGGACUGUGGACUACUGGAGUAUUAUUGGAUGCAGAUGAACGCAAAGCAUCCAGGCCUUUUCUUUCUUCUUCCUGGUGUUUACUGGUCAGUCUGCCCAGUCCACUUCGUUUCUUUGCUUCCCUUUUUUGUGGCUUCAGGGAGAUGUUGCUGCCCUGUUGCUGAAAGCAAAAGCAAAGGUGGAAGGUGAUGAACAGGUCAGGAAACUAUUUAAGCCAGUGAUUGCUUCACUUAUUAUUACAGAGCAACGACUUGUUCUUCUGAACACAUAUUUGUCGGAGUUAAAGAGGGCCCGGGGUAUAUACGACGCAUAUAUACCGCAUUUGAUAAAACUCCAGGUCCGAGCAAUACGUGGUCGCUCGUGUAUCUUGUAGAAAAAAUAGGUGGUACGCCCUGUUGCUAGCUGCUGCCGUGUUGUUUUCCUGAGUUUAUGUGUGCCCCAAACGUCUCCUUUGUUUGCUGUUCGCUCAAUCAGCCGUCCAUCUGUCUACGUGUUCCAGUGGCUUUUUUUCUACGGUAAUGUGUGCUUGGAUUGUUGCUGCUGCUGCUUGACGACAAGGGAGCAUGGGAUCGAUGUGAUUUUAUGUUGCAGUCGUGUUCCUCUUGUAGUCGUAACCUAACCGGUGAAAGCCAAAGGUAUAGCUGUGAAUAUUGAGUUAAUUUCUCUUUGGGUUGUCUUUUAUUACCGAUAUUUUGUUUUGGAUUAACUUUUAACAAACGUAUUUAUUUUGGAUUGGAUAAUUUUACCUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
273
NEP:
99.64%
LE_num:
LEP:
0.36%
ME_num:
0
MEP:
0.0%
HE_num:
0
HEP:
0.0%
Type:
LCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
1.00
Avg Expression:
0.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
Tip: Osa-phasi06g0041 is not a differential expression ncRNA. |