Source:
XR_003242294.1
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
304
Sequence:
AGCAAACUGGCCGUCGAACUU
Length:
21
PHAS Gene Name:
LOC112939002
Chr:
Chr5
PHAS Transcript Annotation:
uncharacterized LOC112939002
PHAS Transcript Sequence:
UAUUUUCCGUGUUAGGAGGUAAGGUUCCCAACCUUGCCUCCCGAAUACAACCUAAAAGUACAUGCCAAGUCAUCUGAAGAUAACUCCAUAUAUAGAUGUAAUAUACAAUAAGUAGUUCCUAACCCAACAAACAGGAUAUGCGAUUUAUUAUUAAUAUAUUUCUCAGCUAAUUUUCUCUCGGCCUCUUCUAUCCCUUCUUCCUUUACAACAUUGUCCAUCAAAAACUCACCACCCAAAGUACCCCAGCUUGCUUGCCAAUCACCACCAGCAAUGUAAGUACUUCUCAAACCGGCCAUCGAACUUGAGCAAACUGGCCGUCGAACUUAGCAACGUUUGGGCGGAUGGAGGCUCUCUUCUGAUCACUGUUCAACGAAACAAGAGUAUAGUUGGGGCUAAGUUCCCGAUACCUCUUAAUCCUAUAAAUUGUACCAUCACCAUGCAAUUGCAGUUGAUAGCUAGAUGACUAUGCAAAUGCUUUUGCAAGAGUUUGGCCUGAACAUCUUGGAUAUAUAUAUAGGAGCUGGGUGCGUUGUCAUCACAACAAGAAAAAUGGGUUACGAACCCACAUGUUCGAGCACGACCUAUCUUCAUACGCCCAUUCUAACUGACUCUGGAGCAGCGCAUGGCAGCUAACUUGUGGCCCGUACACUGCUCCUGAGAAUUGUGAGGUCUUGACAUGAAAUUUGUUGAAGCAAAGACCGAGUUUACCCAUUAUCUUUAAAAAGUUAAAAUAUAAAUGGUACGUUGUGAUGCUUAUGUAUAUAAAGACAUGCAGUUUAAUUUAUGUGUAGGCAAGCAAUUGUGUUCAUUGGAUAAAAAUGUGAGUUACACAAUGAUCAGCACCCUGCAUUCCUGGAAACACUGCAUAGUGUUGCAAUACCACUAGUGUAAUUUGCCAAAUUGGCAUGAUCAAUGUCAGGUCACAAUUUGGAAGCUUAAGAUGCCGCUUAAGAUUAAGAUCUUCAUGUGGUACUUACUUAAAGGGGUUAUGUUAACAAAGACAAUUUAGCAAGACGGAAUUAGAAUGGUAGUUUAAGAUGUUGUUUUUGUAUGAAAAAUGAGAAUAUUCAACAUCUUUUCAUAGAUUGCCAUUAUGCAAAGUUUAUAUGGAGAGGAAUACAAUAUUCUUUUGGUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
232
NEP:
84.67%
LE_num:
LEP:
2.19%
ME_num:
MEP:
4.38%
HE_num:
HEP:
8.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.96
Avg Expression:
33.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -7.02213126937112 | 0.0399610281223974 |