Source:
XR_003242641.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
503
Sequence:
CCCACAUGAUUGUAGCCGUCA
Length:
21
PHAS Gene Name:
LOC112939107
Chr:
Chr5
PHAS Transcript Annotation:
uncharacterized LOC112939107
PHAS Transcript Sequence:
AUUGAUAGAAGAAAAUUUAAUCAUGUACAUAGUGUUGAGUUUAUGUUUCACGCAUCAUAAAUCUUUUGCAGUUGCUCAAGUUGAGUAGUGAUUGUUGCGUGAUUCCACAAUACAUGUUGUUACAUGUCCUUUGUUUCUUGAGGAAGAAGAGAUUUUAUGAGACACGACCAGGCAACACAGUUCAUGUCACAUGCUUUAUAUGAUUGUAUCAUGGCAAAAAUUUACAGCUGGAAUUUUUGCAUCAGAAACUAAUUGAUACCAACCAUGUAGCUAAUGCAAGAAGUUCUGACGAGUGACGAUGCAUGUGGAACGUGCACAACUUUACUUGGUUCAGGUCACAUGGAAAGUUACAUUUAUCUUCAUCAAGUUCAUUCAACUCCAGAACAACCGACCAAAGGAUCUGAAUAUCUUGAGCAUCCAGUUGUGCUAGAAGAUCCAGAGAAGCAGAGGAAACAGAGGAAUUCUGCAAGGAAUGUGCGGUGUGACGGCUACAAUCAUGUGGGCCCACAUGAUUGUAGCCGUCAAGGGGAAACGCUAUGAAGAUCUGUAUAUUAGCCACUGUUUACCUUCCAUCUAGUGAACUUUUGUACCCAAAAAGUUCAUGAAAUAUUCAUCAUCGAACUGCCCAUAGUAGAGACCACAUUGUGUCAGAAAGUACAGAAAUUAGUAAUAGAGCACUACAUUGUGUCUGAAAGUACAGAAAUUAGUAAUAGAGUUUCUGUGUUGUUGACCAUGGUUAAUUGAGAUCCUAGCAUGACAUAAUUUUUUACAUCCUGUAGCUAUAUAUAUAAAAGGAGUAUCAGGGCAAGAGAGAUGCAAGUAGAAAGAAAAGAGCGAUGCUGUCAUAUGAACGAGUUUGAUGGCUCUGUAUCUUCUAAAGUUACAGAAUGUUGGAUAAAUGAGAAAGGAUUGAAAGGCAUCGGUAUGACAAAGCACUGUCUGCACGAUGUUUAUUGGUUGAUUAAGUGACGCUGCAAGAAACAGGUCCAAUCCGAAGUAGGGACACGUUGCAUUGUCGUCAGGAGCUUUCUGGUUUCUCGUCCUCUACUCCUGUUUAUUGGAAUCCAACCAAACCAAGGGGUAUGAGAAAAUACUAUCUUCCGUUUGUUGAGGAUUUUUUAUCAUCAUCAUCAUAUUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
224
NEP:
81.75%
LE_num:
LEP:
0.73%
ME_num:
MEP:
1.46%
HE_num:
HEP:
16.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.96
Avg Expression:
321.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -2.25371552273524 | 0.00273351135327234 |
2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.10394776219886 | 0.00793594851914586 |