RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi05g0036

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XR_003242641.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

440

Sequence:

UCUGGAUCUUCUAGCACAACU

Length:

21

PHAS Gene Name:

LOC112939107

Chr:

Chr5

PHAS Transcript Annotation:

uncharacterized LOC112939107

PHAS Transcript Sequence:

AUUGAUAGAAGAAAAUUUAAUCAUGUACAUAGUGUUGAGUUUAUGUUUCACGCAUCAUAAAUCUUUUGCAGUUGCUCAAGUUGAGUAGUGAUUGUUGCGUGAUUCCACAAUACAUGUUGUUACAUGUCCUUUGUUUCUUGAGGAAGAAGAGAUUUUAUGAGACACGACCAGGCAACACAGUUCAUGUCACAUGCUUUAUAUGAUUGUAUCAUGGCAAAAAUUUACAGCUGGAAUUUUUGCAUCAGAAACUAAUUGAUACCAACCAUGUAGCUAAUGCAAGAAGUUCUGACGAGUGACGAUGCAUGUGGAACGUGCACAACUUUACUUGGUUCAGGUCACAUGGAAAGUUACAUUUAUCUUCAUCAAGUUCAUUCAACUCCAGAACAACCGACCAAAGGAUCUGAAUAUCUUGAGCAUCCAGUUGUGCUAGAAGAUCCAGAUCUGGAUCUUCUAGCACAACUUUCUGCAAGGAAUGUGCGGUGUGACGGCUACAAUCAUGUGGGUCCAGCAGCUAGAAGUGAGGCAGGGGAAACGCUAUGAAGAUCUGUAUAUUAGCCACUGUUUACCUUCCAUCUAGUGAACUUUUGUACCCAAAAAGUUCAUGAAAUAUUCAUCAUCGAACUGCCCAUAGUAGAGACCACAUUGUGUCAGAAAGUACAGAAAUUAGUAAUAGAGCACUACAUUGUGUCUGAAAGUACAGAAAUUAGUAAUAGAGUUUCUGUGUUGUUGACCAUGGUUAAUUGAGAUCCUAGCAUGACAUAAUUUUUUACAUCCUGUAGCUAUAUAUAUAAAAGGAGUAUCAGGGCAAGAGAGAUGCAAGUAGAAAGAAAAGAGCGAUGCUGUCAUAUGAACGAGUUUGAUGGCUCUGUAUCUUCUAAAGUUACAGAAUGUUGGAUAAAUGAGAAAGGAUUGAAAGGCAUCGGUAUGACAAAGCACUGUCUGCACGAUGUUUAUUGGUUGAUUAAGUGACGCUGCAAGAAACAGGUCCAAUCCGAAGUAGGGACACGUUGCAUUGUCGUCAGGAGCUUUCUGGUUUCUCGUCCUCUACUCCUGUUUAUUGGAAUCCAACCAAACCAAGGGGUAUGAGAAAAUACUAUCUUCCGUUUGUUGAGGAUUUUUUAUCAUCAUCAUCAUAUUGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

230

NEP:

83.94%

LE_num:

1

LEP:

0.36%

ME_num:

29

MEP:

10.58%

HE_num:

14

HEP:

5.11%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.96

Avg Expression:

91.31

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17-2.126678484961750.00934679661820874