Osa-phasi04g0559


Function Link


Basic Info

Source:

XR_003241820.1

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

2349

Sequence:

CCACAAGCUGAGGAUGAAGGU

Length:

21

PHAS Gene Name:

LOC112938646

Chr:

Chr4

PHAS Transcript Annotation:

uncharacterized LOC112938646

PHAS Transcript Sequence:

GCUGGUGCUUAGCUAGCUGAACCCCAACGCCGGCACCGUCACCGCCGAUGCCGACGCUCCAUUAACUGUGGAGCUAGCUAGGUUAAUCGUACUAGUAAGAGCAAGUAUAAUAGUGAGUUAUAAGCUUACUAUAAGCUUACGUGGAGGAGAGAGAUAACAAAAAAAUCAAGAAUGCUGGCUCUCAUGCAAAAGCUAGCUUAACAUAAACUCCUAAGUAAAUACAUUAAAUGUAUAGGUGAGAGAUAGAGAGAUGAGGAGAAAAUUAUAGCCAACCUUAUAGCUAAUCCACUAUAUAUGUUGGCUUUAAAAUAGGCUAAUAUUAGGAAGUGAGCUCUACUAUUGUCCUGGCUCUAACAAACAGCCGCAGCCACAAUGGUUGGUGUUUUUGGGGCACAGAAAUCAUGGGCAUGAGUGACUUAAUUUCCUAGAUUGAUGGGCAUGGUAAACGUCGGGAAUUCAGUUGCCUCCGAUGGGAUUCUAUGCAGCUUUGGCAUUGCCCUGCCUGGAGCACGGUGCAUCCACAGAUACGGUGUAGCGUGUGCGUUGUCCACUACUUCCUUGUUGGUGCCACACGGCAUACCUGCUCUGGUACAACACGCAGAGCACUGCUUGCUGCGUGCUGACGGUUCGUCUAGUUCUUCCACGUCGUCGAUUCUGGAUGAGUACGUACGGGUCUCUCAAGAGAUGCUGGAUGGUCUGGCCAUGCGUUGGGACAAUUGGACUGAUCUGAUCGAUGGUUGUUCUAUCUUUGGUUGUAUCCUGACUGUAUUGUUGCAAUGUUUCUCUGUUAAGGCUUACACACAAUGGAGUAAAAAAAAAGCGAGAAACUAAAAGGAGAAAAACAAAUAAAACGAAUUAAGGGAAAUUAAUUUGAGCGACAACUUUUACGAUGAUCUGGUAGCUAAAUGACCCUUUUCUCAAGUACAAUUUUAUUUUAAGAAUUUUACCAUACCUGAGAAGGUACCACCAGGUACUAGGAGGUAAAAACUCCAUCUGUCCGUCCAUUCACAAAGGGUAUGAUCGGAAUAGCUUGUGAUAAUCAUCUAGUCCUACACCUGGCAUCGUCUCUUCUACAUCUUCUUCUCCUUCCACAUCUUGUAGUCCCAAACAAUUCCGUCCCACUCUAUAGCUCCGCGACACACUGUUGAGACCUGAAGCACACCGCCAAUGGUUAUAGAGGAGGCUACAAUCCAGGAUCCAGUUUUGGGGCCUCAUCAGGAUGGGAAUAGUGGGAGGGCAGGCGACGCUCGUGAGGUGAGUUCAUGUGCCACCGACACCUCUGAGGGGGUGGUUUGCUGGUGAAGAGGAGAGGCAGCAAACAUGGACAGACGGAGCUCGCCAAUGAUUCAGCUAGUGGAAUGGAAAAGGAUGAACAAAAGAAAGAGCAAGUAAAAAAUGGAAAGAAGGGCUCGCCUGAAUUCGGGAAGGAGAAUGGUGGAUUCCUUCCAUUGUGAUGAUGAGGAUUGGGCAUUUUUGCUGUUUGAGCACCAUGUCCUGUACUCCUGUACGUCUUCAAUGGUGAUAGACUAUCUAACAGUUCGGAUCAAGCUAAUAACCAGAAAAACAUAUUCCUGGUCAUUAAUCCAAUGUUAUCUCAACUAGAAUUUUCAAAUACUCGGCUCUAUCAUUGUGGAUCAACUUCUUUAGGUACAUGAAAGCACUAAAUUUCCAGACAAUAUAGCUCAUGCACCUCUGGUUCGCAUGGUUCUUGGUGCCACCAAGACUAGGAGUUGACCCCAAGCAGAGAGGGCACUGAAUUCGCAGUUGCUGCUGGCCUCGGCUUCAUAACUGAUGGAUGCUGGGUGGCGUCCCCCUCCUCUUUAUUGCACAACCAGGACAGCUGACAUGGCAACGCAUGACUUUGGAGGUGUCCAGAGCAUAAAAGGGGGUGGUAGGUCCCAGCUCGGUCUGAACCGCGGCUGCAGCGGUGUAUUAUCGAUGAGGGGAGAAGUGCUAAAGCAGAGGUUGCCGUUUUGCGAGAGUGUCAGUGACAGCGGAAGGAGAGACAGCCUGAGAGGACGAGAGAGAGCUAGCGGAGAGGAGGUAGUGUUGGUGGGAGGAUAAGAAAACAAACUAGAGCAGCGUGGGGGUGGGGGUGGGGAUUGGCGACGGGAGCGGACUGGGGAGGAGGAACAACGCCAUGGGAGGAACGACACCGGCGUCCACCAUCAAAUCACCUCCCUCAAGCUCGAGGAACUGGAAGCAUCGGGGAGGGCGAUCGAUCACUUCUUCAUGGAUAGGGCGAGGUCAUUGGCUGAGAGGGAGGCCUCGACGAACUUGCCGAUGGUGAACUUGUCGGCCGCUGCAGAGCGCACUGUAGCGCGCCGUCCUGACCAAAGGCCUCUGCAUCCACAAGCUGAGGAUGAAGGUGAUUUGGGAUGGCACCGAGAGGUGCGAGAUGAAGAUGGUAAUUACCAGAGGAUGACGUGUGGGACCAAGGAUAUUUUAUAAAUAAUUGUUUUCUUCAUUUGUAGAUCGGACUGAUCUGGUGAAAUAGCUGCCGCACAUAUUUUGUAAAUACCGGUUACUUUACACCUGAACUUCUUCCACGGUAUGGAAAACUCCUGGUGUAAAAAGUUUAGGGUGUAAAGUAACCGAUAUUAGAGUUUAGUGGUGAAAAUCGAAUUACCGACAUCAAACGUGGUCUUUGAAAGUUGAAAUGUGGUUACUAAAAGUCAUUAGCACUACUUUCUAAGAGGACUCGCGCGCUAAUUUAAAUGGUAGCCAAAUUUAAAGAGGUGGAGCGCACCAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

260

NEP:

94.89%

LE_num:

1

LEP:

0.36%

ME_num:

11

MEP:

4.01%

HE_num:

2

HEP:

0.73%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.96

Avg Expression:

33.98


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi04g0559 is not a differential expression ncRNA.