RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi04g0417

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XR_003242125.1

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

1065

Sequence:

AGCGAACUACAGAUUCUACGU

Length:

21

PHAS Gene Name:

LOC112938801

Chr:

Chr4

PHAS Transcript Annotation:

uncharacterized LOC112938801, transcript variant X2

PHAS Transcript Sequence:

UACCUACAGUGGCUAACUUUGUCUCCUCUCGAUCGUCGAUCAGAAGUCAAAUUAAGGAAGAGAUUGACUGCCAAAAAAGAAAACAAGUAAAAAGUUGCUCCCUUGAAGAUAAAAAGUUUGUUAUAAUGGUUUGGUGCAUUGUCUCCAGCUUUAGCCAAAUUAAAUUGUCAUCUCGCCUGUAGGCUAUAACUGGAAUGGGAGGAUAGAACACGGCUGCGACUGAUCAGGACUAUAGCAGCUGAUGGAGUAGCAGAAAGGAUGGACAUUUGGGUCAAGUCGAAGCUCAGAUGCUUAGCUCUCAGCACUGCUGUCUGUCAGGGUUCAGAAGACGCUGGAAGAUGUUCGGCGGUUGUGUUCAUGCUUUCCGCAGCUCACUUGCUUCCGUGAUCACGAGAACCUAAACAAGCACACGGCGUAAUGGAGCUCCUGAUGCUUCUCAUACCAAACUUGCAUGCUUCCUUGCUGUUGGUGUAAAUUUGAGGAGUAUACUAUAUAUGGGUUUGUUCAGCUGCCUGUUUUACGGCUGCGGCACAGACGGCACCAACAAUGCCACACGCACGCGGCGGCGCAGCCGCAGCCGCAGCCAGCUUGCUGAACAGGCCCAAAUAUAUUCCAAGCUCUCGGUUUCCUUGUUGGUGGCUUAGGUUGGUUUAUAUUACAUAUGGGUAGCACAAUUAUUGCACGCUGUUCUUAUGCAUAGUAAUAAAAAAAAGCUGGAAUGUAACAAAUGAGCGAGAACAAAUGGACAUAUCGGCUAAUUUGUUCAGUACUUCUUUUUAGAAAAAUAAAAUUGUUCAAGAGAAAAGGUUCAUUUUUACUACCAUAUCAGGGUAAAAGUUGUUGGUCAAAUUAAUUUCACUUAACUUGCUUUAUUAGUUUUUUUCCCAUUUCAACGUCUCUCUUGUUAUUUUCUCCGUCGUGUAAACUCAACAGGAGAAACAUAACAGUCAAAAUACAGCUAAAGAUAGAACAAACCAUCAGAUCAGUCCAAUGAUCCAAUCAUCCCCAAGCAGAGCUAGAGUCUUCAUCAUCUCUAGAGGGAGCCAUACUCCGCUAGAAUCAGACAGCGAACUACAGAUUCUACGUAACUAGCAGUGCUCUGCGUGUGAUGCACGAGCAGGUAAGCUGAGCUGAAACACCCAGGAAGCAGUAGACGUUGCACAAGCUGUGCUGUCUGUUGAAGCGCGGCGCUCCAAGCAGAGCAACGCCAAGCAGCAUGGCAUCCGAUCGAGGGCAACUGAAUUUCCGACGUCUUCCAUGCCCAGGAGUACUGUAGGAUAAAGUCAUGCUGAUCAUUAUUUCUGCCCCCCCCCCCCUCCCCCAGAAAAAAAAAACCCAAGCGGUUUGUGCUUGCGCCAACAUCGAUCACGAUUUCAUAUCGCACAGCAAUUGGCUCGAGAAUUGUCGUCGUUUUUGUUACAUGCCAAUGUCUCAAUCUCUUGCAUGGUUGGGGGUACUAACUAUAUGUAGCUCAGCUAUAUAUUCACUUGUGGAUCUGUCCCACAUAACACAAUAAUUAGUCAGUUAUUACUCGUACAUUUAACCUGCCUAGCUCCACAGCUAAUGGAAACGUACAAAGAAAAUAAGACAUCAUUGGCAGUACAGAUUAGAAAUUUAGAAUAGCAAAAGAUUGCUCUGAGCCAAGUUGGCAUAUCAGCAUUCAGCUCUUGGCAAUAACUAGACUGAUAUCACUAUAUAGUUAGUUCUGUUGCCUUUUUGUUUCAACGUAUCUCCAGUACACUUCAAAAGCAUAUAUACUAGUCGUUUAUCUGUUCUUCCCAACCAGGUUAGAAAAGUACGGACCACCACCCUAAGAAACCAGAAAAAAAAAAAAAGGCCCAUGAAGCCGUUUCCUUUAACCUACUUAGCCCAGGCCCACUCGGGCGGCCCCACGGACAACGUGUUCGUUCGUUUAUACCCAUCUCCCUCGCCCCUUCCGCGCCGCCAUCCUUGCCGCCGGCCACCGGUGAGAGCCACGGCCUUUGCUUGCUGCUCGAUUCGGUUUAAUUUGCUGCUGCGUGGUGCUGUGCUCGUACGUAGUAGUAGUAGUGACAGGUUACAGUCCCGAGGCGUCCAAACUCCAGACGUCCAGACCUAGAAAUCCAUCCCCAUCUCCUUCUCCGGCCGGGCACUGGGGAGCUACGCCGUGCCCCUUCCAACCGAGCGCCCCAGCAGGCCGGACGCUCCCUGGAUUUACCGCAAAGCAGAUCGAAUCGGUUUGUUGCUGCUACGUGCUGUCCCAGGAAACAGUGCUGGUAUCACAGGAAGACGGAAUAUCACAACAACAGAGGUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

248

NEP:

90.51%

LE_num:

1

LEP:

0.36%

ME_num:

15

MEP:

5.47%

HE_num:

10

HEP:

3.65%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.98

Avg Expression:

55.70

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi04g0417 is not a differential expression ncRNA.