Osa-phasi04g0412


Function Link


Basic Info

Source:

XR_003242125.1

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

1023

Sequence:

UUCAUCAUCUCUAGAGGGAGC

Length:

21

PHAS Gene Name:

LOC112938801

Chr:

Chr4

PHAS Transcript Annotation:

uncharacterized LOC112938801, transcript variant X2

PHAS Transcript Sequence:

UACCUACAGUGGCUAACUUUGUCUCCUCUCGAUCGUCGAUCAGAAGUCAAAUUAAGGAAGAGAUUGACUGCCAAAAAAGAAAACAAGUAAAAAGUUGCUCCCUUGAAGAUAAAAAGUUUGUUAUAAUGGUUUGGUGCAUUGUCUCCAGCUUUAGCCAAAUUAAAUUGUCAUCUCGCCUGUAGGCUAUAACUGGAAUGGGAGGAUAGAACACGGCUGCGACUGAUCAGGACUAUAGCAGCUGAUGGAGUAGCAGAAAGGAUGGACAUUUGGGUCAAGUCGAAGCUCAGAUGCUUAGCUCUCAGCACUGCUGUCUGUCAGGGUUCAGAAGACGCUGGAAGAUGUUCGGCGGUUGUGUUCAUGCUUUCCGCAGCUCACUUGCUUCCGUGAUCACGAGAACCUAAACAAGCACACGGCGUAAUGGAGCUCCUGAUGCUUCUCAUACCAAACUUGCAUGCUUCCUUGCUGUUGGUGUAAAUUUGAGGAGUAUACUAUAUAUGGGUUUGUUCAGCUGCCUGUUUUACGGCUGCGGCACAGACGGCACCAACAAUGCCACACGCACGCGGCGGCGCAGCCGCAGCCGCAGCCAGCUUGCUGAACAGGCCCAAAUAUAUUCCAAGCUCUCGGUUUCCUUGUUGGUGGCUUAGGUUGGUUUAUAUUACAUAUGGGUAGCACAAUUAUUGCACGCUGUUCUUAUGCAUAGUAAUAAAAAAAAGCUGGAAUGUAACAAAUGAGCGAGAACAAAUGGACAUAUCGGCUAAUUUGUUCAGUACUUCUUUUUAGAAAAAUAAAAUUGUUCAAGAGAAAAGGUUCAUUUUUACUACCAUAUCAGGGUAAAAGUUGUUGGUCAAAUUAAUUUCACUUAACUUGCUUUAUUAGUUUUUUUCCCAUUUCAACGUCUCUCUUGUUAUUUUCUCCGUCGUGUAAACUCAACAGGAGAAACAUAACAGUCAAAAUACAGCUAAAGAUAGAACAAACCAUCAGAUCAGUCCAAUGAUCCAAUCAUCCCCAAGCAGAGCUAGAGUCUUCAUCAUCUCUAGAGGGAGCCAUACUCCGCUAGAAUCAGACAGCGAACUACAGAUUCUACGUAACUAGCAGUGCUCUGCGUGUGAUGCACGAGCAGGUAAGCUGAGCUGAAACACCCAGGAAGCAGUAGACGUUGCACAAGCUGUGCUGUCUGUUGAAGCGCGGCGCUCCAAGCAGAGCAACGCCAAGCAGCAUGGCAUCCGAUCGAGGGCAACUGAAUUUCCGACGUCUUCCAUGCCCAGGAGUACUGUAGGAUAAAGUCAUGCUGAUCAUUAUUUCUGCCCCCCCCCCCCUCCCCCAGAAAAAAAAAACCCAAGCGGUUUGUGCUUGCGCCAACAUCGAUCACGAUUUCAUAUCGCACAGCAAUUGGCUCGAGAAUUGUCGUCGUUUUUGUUACAUGCCAAUGUCUCAAUCUCUUGCAUGGUUGGGGGUACUAACUAUAUGUAGCUCAGCUAUAUAUUCACUUGUGGAUCUGUCCCACAUAACACAAUAAUUAGUCAGUUAUUACUCGUACAUUUAACCUGCCUAGCUCCACAGCUAAUGGAAACGUACAAAGAAAAUAAGACAUCAUUGGCAGUACAGAUUAGAAAUUUAGAAUAGCAAAAGAUUGCUCUGAGCCAAGUUGGCAUAUCAGCAUUCAGCUCUUGGCAAUAACUAGACUGAUAUCACUAUAUAGUUAGUUCUGUUGCCUUUUUGUUUCAACGUAUCUCCAGUACACUUCAAAAGCAUAUAUACUAGUCGUUUAUCUGUUCUUCCCAACCAGGUUAGAAAAGUACGGACCACCACCCUAAGAAACCAGAAAAAAAAAAAAAGGCCCAUGAAGCCGUUUCCUUUAACCUACUUAGCCCAGGCCCACUCGGGCGGCCCCACGGACAACGUGUUCGUUCGUUUAUACCCAUCUCCCUCGCCCCUUCCGCGCCGCCAUCCUUGCCGCCGGCCACCGGUGAGAGCCACGGCCUUUGCUUGCUGCUCGAUUCGGUUUAAUUUGCUGCUGCGUGGUGCUGUGCUCGUACGUAGUAGUAGUAGUGACAGGUUACAGUCCCGAGGCGUCCAAACUCCAGACGUCCAGACCUAGAAAUCCAUCCCCAUCUCCUUCUCCGGCCGGGCACUGGGGAGCUACGCCGUGCCCCUUCCAACCGAGCGCCCCAGCAGGCCGGACGCUCCCUGGAUUUACCGCAAAGCAGAUCGAAUCGGUUUGUUGCUGCUACGUGCUGUCCCAGGAAACAGUGCUGGUAUCACAGGAAGACGGAAUAUCACAACAACAGAGGUC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

258

NEP:

94.16%

LE_num:

7

LEP:

2.55%

ME_num:

9

MEP:

3.28%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.97

Avg Expression:

12.69


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi04g0412 is not a differential expression ncRNA.