RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi03g0220

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XR_003241247.1

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

1993

Sequence:

ACUGCAUUAUUGAUUGGAGCC

Length:

21

PHAS Gene Name:

LOC112938208

Chr:

Chr3

PHAS Transcript Annotation:

uncharacterized LOC112938208

PHAS Transcript Sequence:

UGGAGAAACAAAGUCACGCGUAUAUAAAAUGUACUUUUGUAAAAUUUAAGAGUAACGAGCUCUAAAUAUUUUGUUCAAAACAUUUUGGUAUUCUUGAACCCUUGUAGCCUUCUAGUUUUGCAGUGAUCAUGGCAACACAUAUUUUCAGCGGCACUGAAUGAUUUUUUUUUUGAAUAAAUCGAAGAGCAUCAAUUUCAUUGAAUGGAGCAGGAAACGGCACUGAAAUAUCAAGAACACUGGAACUUUUUUUGGUGCUGGUACCCUGGUUGAGAUUCCACAUGCUUCCCAUUUCUACAGCCACUUGAGUAAUAGUAUGGGUCCUCUCUUCCUCUUCUUAUUUUCAUUCCCAAAUAUGGAGUGAAGGAAAAUAGCAAGGAACUGAGCAGCUUGCCGGUAUAUAUGAUAUUGAUAUAUAUAACUCACCAUGCAUCAUGUAGGUAGUGAUAGCCAUAGACUAUAAAUGACAUACCAACAAGAAACAUAAAGAGCAUUCCCAAAUCAGGAACACACAUGACAUGAUUUUGAUGGUUAGCACUUAACUUUGUAGUAAGCAUAGUUAACAGUAACCAAGUUAUGUAAUGUCGUUGGGCUAGACUAUGAGGCUAGUGGGCCUGUUCGUCUGCCUGUGCUGCGGCUGCGGUGCAGCCGGCACCAACGGUGCCACACACACAUGGCGCAGCCGCAGCCGCCGCAGAUAGACAGCCGAAUAGGCCCAGUAUUUGUUAUCUUAAAAAUAAAUAAAAGAAGAUAGGUGCUACGGAGUUGUGUUGCUUUGGAUAGACGUGUGAUAGUGCGAGCCUAGCUUUGCCUUGCUAGUUUUCCGGCAGCUGGUAGGUCUUGCCUUCGUUACAACUUGACUAUGAAGUCAUACAACCAGCGGUGGAGCGAGGCCCAGCAAAUCCUAGGUUGAUGCGACACUGCUCAAGCGGGUGGUAGAAUAUGCAAGCCCCUUUCAACGCAAGAAGUAGAAGGUGAGGGCUUCGUUCUUGAUGCCAGUGCAAUCGAUACUCCUGGUCCAUGGCUGUAGCAAUUUACCACACAAUGUUGCAAAUCCUACACCUACAACUACCCGUUCUGCAUUGGAAUUAUUCCCGAAGCCUUCCAUUCUCAUGCUCGUCGAAGAAUUUGACUUUCAUACUAGUGGGAAGAGAAGGAGAAGAACAAUCAAAAGGGCUAGGUAAUAUUUCACAGGAUGUCUGGAGUGAGAACCGUAUAUAUAAUACAACACAACCCAUCUGCAGUAUAGUAUGUCUAUAUAUAUCCUACUACAUUUUCUCACUUAUGUAAUGUGCUAAUUAAAGAUGUGUUGUUGGUGUUGCCUUAUAUCUUCCACUCUGUAGAGCCAAGAUUAUCCCCGUUUACUUCUUUUAUUGUACAAAAGUAACUGCAUCAUUGUACAAAAGUAACUGCAUCGUUUGGUUCUUGCCAGUCCUCGAGGUGGUACCAUUCGCUUGGCCAGCUCUUGCCACUCCUUCUAGCGAGACAACUAUAUUUCCGUGUUUUUGUUUUUAAAAAGGGUAUAUUCUUGCAAAACACGUGAGAAAAUAAUAUAUUUUCAGAAAAAAAAAAGUGCUACAUACCAAACAUCCAUGUAUGAUGCAUGAGUAAAAUUUUACUCCCUGUGUGUUUGUAAAACUGAAUAUAUCCACAAGUACAGUUUGACUAAGACAUGAUAUACUACAGCAUAAUAGCACACGAUACAUGUGGUUUAGCACUAUGUACCAUGCAUUUAACGCUUGCUUCUAGGAAAGUACUACAAGACCAUUCACUCCGAGCAAGUGUACCAAUUUACUAUUUAGCUAACAAGCUAGUUUCAAACAAAUUAAUAGAGCUAAAUCAAGUAAGAAAAUUCUAUAAAGUUUUUAUAUUCCAAGUAAGGACCUCUAAGAAUUCUCAAGUUUUGAAUGGAGCACAAUCAACCAGUGACCCUAUGUCACGGAAGAUGGCACGCCAUGUUCCAACCUUUGACUGUGGCUCCAAUCAAUAAUGCAGUACUGCAUUAUUGAUUGGAGCCCAGUCAACAAACCAGUUUCAGGAAGGAGAAGAGGGCGCCAAGUAGCUUCUUGAUUCCAGUCUUAUCAAUGCUAUGGCUAUUCACUAAAGAAUGAUGCAAAGCCUAUAUAUACAACUAUCCAACCAGCACUGAAACCAUUCCCAAAGCCUUCCAUUCUCAUGUUCGUCAGAGAACUAGAAUUUCAAAAUUAGUGGGAAGAGAAGGAUAAGAUCAUAACAACCAAAAGGGCUAGGUAAUAUUUGAUAGGAUGUAUGGAGUGAGCAACAUGUACGGGAGAUGACAUCCUAGUGUACUUGGGGAAGAAAGUUCAAUGGCACAGGAAGUCGUCCGACACUAAGGAGCGGUAGGGACAAAUUGGUGCCCCUCGUGCCGUUGAAUGAGAGGGAAAUCUCCAUCGAAGCUGAACAGAAGUGAGAAAUGGCUGCCGCUCUGACCUCCAUGUUUGCUAGCUCUUAGCUGCGGUCACACUGAACAAGAUCGAGGAAGAGAUCAAGGAGCUUGCCAUUAAGAUUGAUUAGUAUCCAAUAGGCAUCACAAUUGGAGAAUCCAAUAUUACAAAAUUUUCUUCCAUGUUUAAUGCUUGUAAUUCUGUUGAGAUUCCACAUGCCUCCUAUUUCCCAUUGGCCACGUUGAGAAAUAGUACUCUGUGUUAUCUUCCACUACCUAAGCAAUGAGUACAACUAUACACAAGAUGAUAUAAAUGUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

254

NEP:

92.7%

LE_num:

6

LEP:

2.19%

ME_num:

14

MEP:

5.11%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.98

Avg Expression:

16.65

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi03g0220 is not a differential expression ncRNA.