RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-phasi03g0124

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Source:

XM_015776798.2

Strand on PHAS Transcript:

-

Start on PHAS Transcript:

1864

Sequence:

GAAAACCCCUUCCGACAUCCGGUC

Length:

24

PHAS Gene Name:

LOC4332713

Chr:

Chr3

PHAS Transcript Annotation:

U11/U12 small nuclear ribonucleoprotein 65 kDa protein, transcript variant X1

PHAS Transcript Sequence:

GGCAGACGGCCGCCCUCCCCGCCGCACGGCACACAGCAGCAGCGCCGCCGUCCUCCUCCCGCCUCCUCGCCGGUCGCCUCUCUCAUCUCCGCACUCUCCGAUCUCCCCUAGCGCCCCGGAAGCCUCAUCUCCUCCUCCCGCGCCCUCCCACCUUCGCUAGGCACCUCGGCGAAAACCCUACUAAUCUUCCCGAAUCGACACCGAGCCCCGGUACGACUCCGAUGGCAUCGUUCCCGCCGCCGCCGCCGCCUCCGCACGUUCGUCCCGCGCCCGCUACUCCAUCACUAGCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCGCCUGGAUCUGCUCCGCCGGCAGCGACGCUCCUGGUGCGGCACCUUCCAGAGGCCAUCCCGCAGGAGAUGCUCUCCCGCCUCUUCUCCCACUACGGCGCCACAUCCGUCCGCCCCUGCGCCGGUGGAAAGUUGAGGAAUUGCGCAUUCGUAGAUUUUAGGGACGAGGUAGUGGCCAGUCAGGCACAGUCUCUGCUGAACAGGUUGAGGUUCCUUGGGAAAGUGCUGAUAGUCGAGAGAGCGAACCAGCCAAAUUCAAAGAAUGCUAACGAGAAGCAACAGGAGCAUGAAGCACAAGGGGCAUUGCAAGUGCCAAGUAUGAAUUCCUUAAACCAGAAGAAUCCCAUAUCUUCUGCUGAACCAAUUGCGCCUAGGCUUGGGGUGGAUUAUCCAUUUCCUCCGCACCUCGAGUACGCGUAUCCUCCACCAGAUGGAAACAUAUUGACAAAUAUAGUCAAUGCUCUAAUUGCUGUUCCCCGAUUUUACACCCAGGUGUUGCAUUUGAUGAAUAAGAUGAAUCUUCCAGCUCCAUUUCGGAUGGCGUUGCCUACUCCACCUCUACCAUCACAAGUGCCUGCUCCACCACCACCACCACCACCUCCACAGCCGUCUGCAGCAAAUAAACCUCAUUUGACAGAUCUGUCUAGUGAUGAGUCUGAGUUGGAAUCUUCUGAUGAGGAUGUUGAUAAAAGGAAAGUUAAGCGCACAAAGCAUGAAGCUAUUGUUGGUCCUGCAGUUGAUAAAAGUAUUGCUCAUGAAGCAGUCGGGGUGAAACCUGCUGCAUUAGUUUCUAGUGAGCUUCAAGUGAUAAAAAAGAAAAAUCCAGUUCUGCAGAUUAAUAUUGCCCCAAAGGCUGCACAGAAGGAGCUUACUGUUCAAAGUACUACUGACAAAGAAUUGGUGCCAACAGCUGAACAACUUCAAGGAAAACAUUUUGUCACACCUCAGGAUAUAGAAAAAGAGAAAUUGCCGCCAGAGGAGAUUUUGUCCCUUCCUAUGUUCAAGAAUUACACACCAGGGAAUCCUGCCAGUGUGUUAUACAUAAAAAACUUGGCAAAGGAUGUCAUUCAGGAUGACUUCUACUAUGUCUUUGGGUCUGUUUUUGAAAACAUGGACAUUGCACGAUCUAGUCUGAGCAUCAAACUAAUGCAGGAGGGGCGGAUGCGGGGCCAAGCUUUUGUGACAUUUCCAUCGGUUGAACUUGCUCAACGCGCACUGAAUCUUGUACAUGGUUUUGUGUUCAAAGGCAAACCAAUGAUUAUACAGUUUGGCAGAAACCCUGCGGCUAACAAAUCUUCCUAGGAGGGUUGCAUUCUUUCAGAUACUGAAUGCACUUUUAAGUCAAUAGGGACUAGCAAAUGGAGACCAAAACUCUUGAGUAUUUCUUCAGACGUUUGGUGGGGAAUGGCACUGAUUGUUUCAGUCUGACGGACAACAAUGUUUUUCGGCCGUGUUGCACCUGUAAGGGUGUGUUUAGUUGGGGAAAAGGAAAUUUUUGGGUGUCACAUCAGACGUUUGACCGGAUGUCGGAAGGGGUUUUCGAAAACCCCUUCCGACAUCCGGUCUAGAACUCGCCUGGAAACCGCGAGACGAAUCUUUUGAGACUAAUUAAGCCGUCAUUAGCACAUGUGGGUUACUGUAGCACUUAAUGGCUAAUCACGGACUAAUUAGGCUUAAAAGAUUCGUCUCGCUAUUUCCCCAUAACUGUGCAAUUAGUUUUUCAUUUUAUCUAUAUUUAAUGCUUCGUGUAUGUGUCUAAAGAUUCGAUGUGAUCUUUUUGGGAAAAAUUUUUGGGGAACUAAACGGGCCCUAAAUGGUAAAAUAUGUGGAAGGAACUGGGCGCAUGUACACUGUACAGAAGAGUGAAGAUUGUAGAUUGUGGGCUGAAGAGCAUCCUCGUUCAAUAUGGUGCAAGAUAAACUUGUACAGAACCUUGUAGCGGUUCUGUUCUGCGGUCUGAAAAUGUUGGGUUUGGAAACAAUUGAGGCCUAUGUAAUGUGGCAUUUAUUUACUGAAUUCGGUGGGAACUGAACUGAUUCAUACAUUAAGAGAUUCCUGCGCGAGGUGUGAACUACUCGAAUUUAUUAAGAGUAGCAAUCUAGUCGAAACUCUUGUUUUAUGCUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

273

NEP:

99.64%

LE_num:

1

LEP:

0.36%

ME_num:

0

MEP:

0.0%

HE_num:

0

HEP:

0.0%


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Type:

LCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

1.00

Avg Expression:

0.27

Tip: Osa-phasi03g0124 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi03g0124 is not a differential expression ncRNA.