Source:
XR_001544388.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
682
Sequence:
UCCACCUCUUCUUUCUACCUC
Length:
21
PHAS Gene Name:
LOC9267531
Chr:
Chr3
PHAS Transcript Annotation:
uncharacterized LOC9267531
PHAS Transcript Sequence:
GGAAGCUCACACGCUAGAGACCACUAGGCCAGCGCGAGCGCCCAGCUAUAGCCCAUCGAUCUCUUGGAAAAGCCUGAGAUCAAAUCCCAGCUUAACUCCCCAAAGAUUUCCUGACUCCAAAUCUCCAUCCGCUCCGCAGCUACCUUCUCCCCAUAUAUACACGCGCACUCCCUCCCCCCUCUCCAGCCUCCAUGACCCCUCCUCGCUCACCUUUCUCUCUUGCCUGAGCCAAGAGCUACACUUUCUAUAUCCACCACUUCACCGUGCAAACCCCAUGCACACGCCUUGACAGAAGCUGAGCUAGCUUCUCCUGCGUCGCUGCAAGCUGCUACUUUGGUUCGUGACUGAAAGCCAAAUGGAAGAUACGGAUCAGGAGCUAUGCACCGUUGCGGUGGAGAUGAUGAGUUCAGGAAAACUCAAGCCAUGUAGACACUUGUUGUUCUAUCAAGACUCCCUUCACCGAGAAGCAUCCAUAAAAAUGGUUCAUGUUUAGCAAUAGCACGGUGUUAUCCUAACUGAGCUUUUCUUCUAGCCACCGUCCACAUCCUUCUUCAAAACCUCAACAUCACUUUGUGUGGGAAUUAAAAGGAAUUGGUCUUCUUGACCUUGCAAGACCUUUUCUUGACCUUGUAAGACCCAACAUCGUUGUGUUGUUUUUCUUGUUUCUUAUUUUUCAAUUUCAUCCACCUCUUCUUUCUACCUCCCAUCUUUCUCCUAGUUCUUGCCUUCUCUCUCGGUCUAUCCCUCCUGAGCUGUAUUGAUCACUUUCUAUGUUAUUUUCUCGAUGUUUAAAAGAAAAUUAAUUUUGUUUAGCAAUAUACGAAGAGAUUGUGAAAUUCUAGUAUACCUGUAAAUUGUAAUAUUAUUGCUUGCGUGAUAUAAUUUGUAAUAUUAUUAUUGCUUGCGUGAUAUAAUGUAUUUCUGCAGUCAGAGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
167
NEP:
60.95%
LE_num:
LEP:
11.68%
ME_num:
MEP:
27.01%
HE_num:
HEP:
0.36%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.91
Avg Expression:
36.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | C101LAC // leaves // control 0 hour--/--C101LAC // leaves // 8 hpi;M.oryzae | -8.82549205127786 | 0.0168066351494563 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -7.46608971871569 | 0.00560909368893577 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -8.3527387435071 | 0.00406328923257186 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -8.86438036014997 | 0.0224939293327953 |