Osa-phasi03g0101


Function Link


Basic Info

Source:

XR_001544388.2

Strand on PHAS Transcript:

+

Start on PHAS Transcript:

640

Sequence:

CAUCGUUGUGUUGUUUUUCUU

Length:

21

PHAS Gene Name:

LOC9267531

Chr:

Chr3

PHAS Transcript Annotation:

uncharacterized LOC9267531

PHAS Transcript Sequence:

GGAAGCUCACACGCUAGAGACCACUAGGCCAGCGCGAGCGCCCAGCUAUAGCCCAUCGAUCUCUUGGAAAAGCCUGAGAUCAAAUCCCAGCUUAACUCCCCAAAGAUUUCCUGACUCCAAAUCUCCAUCCGCUCCGCAGCUACCUUCUCCCCAUAUAUACACGCGCACUCCCUCCCCCCUCUCCAGCCUCCAUGACCCCUCCUCGCUCACCUUUCUCUCUUGCCUGAGCCAAGAGCUACACUUUCUAUAUCCACCACUUCACCGUGCAAACCCCAUGCACACGCCUUGACAGAAGCUGAGCUAGCUUCUCCUGCGUCGCUGCAAGCUGCUACUUUGGUUCGUGACUGAAAGCCAAAUGGAAGAUACGGAUCAGGAGCUAUGCACCGUUGCGGUGGAGAUGAUGAGUUCAGGAAAACUCAAGCCAUGUAGACACUUGUUGUUCUAUCAAGACUCCCUUCACCGAGAAGCAUCCAUAAAAAUGGUUCAUGUUUAGCAAUAGCACGGUGUUAUCCUAACUGAGCUUUUCUUCUAGCCACCGUCCACAUCCUUCUUCAAAACCUCAACAUCACUUUGUGUGGGAAUUAAAAGGAAUUGGUCUUCUUGACCUUGCAAGACCUUUUCUUGACCUUGUAAGACCCAACAUCGUUGUGUUGUUUUUCUUGUUUCUUAUUUUUCAAUUUCAUCCACCUCUUCUUUCUACCUCCCAUCUUUCUCCUAGUUCUUGCCUUCUCUCUCGGUCUAUCCCUCCUGAGCUGUAUUGAUCACUUUCUAUGUUAUUUUCUCGAUGUUUAAAAGAAAAUUAAUUUUGUUUAGCAAUAUACGAAGAGAUUGUGAAAUUCUAGUAUACCUGUAAAUUGUAAUAUUAUUGCUUGCGUGAUAUAAUUUGUAAUAUUAUUAUUGCUUGCGUGAUAUAAUGUAUUUCUGCAGUCAGAGUGCA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

160

NEP:

58.39%

LE_num:

13

LEP:

4.74%

ME_num:

59

MEP:

21.53%

HE_num:

42

HEP:

15.33%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.79

Avg Expression:

131.03

Tip: Osa-phasi03g0101 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-phasi03g0101 is not a differential expression ncRNA.