Source:
XR_003241019.1
Strand on PHAS Transcript:
-
Start on PHAS Transcript:
208
Sequence:
UGGAGAGUUGAGCACGAUUGU
Length:
21
PHAS Gene Name:
LOC112937986
Chr:
Chr2
PHAS Transcript Annotation:
uncharacterized LOC112937986
PHAS Transcript Sequence:
GGACUAGUUAUGUGGAGCUAACAGUGGGCGGUGGUGGUAUAGCACCGCCGCAUGGAACAACUAAGGGAGUAAAGAUUAGACAAUUAUACCCCUUCUUAGUUUGGACCAACGGGCGCUCUCAUCUUGUGCUCGGUGAGGGGCAGAAGGCGGAUUUUGCACUAGGCCCCCUCUGCAACCUCCAUCCUCAACAAUCGUGCUCAACUCUCCAUGGAGAGUUGAGCACGAUUGUUCGGCACCAGCAGCGGCCUACGGCUCAGCUCACUCACUAAGCACGAAAUUAUGUUAUUAGUUGUGCCAGGUUUCAAGGGGAUCCUACAUGAAUUCUCCCUCUGCGUAACAGCUACAUUUCCGACGCCUACUAUUCCCAUGUUAAAAUGGAGCUAGUAUUAUGUCGAGUACUCUAUAAACUCUUGCCCCUCGUUUUACCACUUUGUGGGUUGUGUAACAAGGAGAGGAUUUGGGCAGUGGCUCUGAUAUGGAGUAUAUAGCUUCAGGGGGUUUCGGCUAGCUUCAAAGGAUCUGAAAAAAAUGAUGAGAAAUAAGCACAGAUGGGAGAUAAAGGUGCAUGAUCUAAUCGCACCAACUGCAUAUUAAUCAGCUAGCUGAUGGAUAGAUGUAAAGACGAGACAAUAUUUCCACCGAUCUAAGUAGGUGGUACUAGAGCCUGAAAUCUGGGCAUCUAAUUAAAUGAAAAUUGAUCUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
242
NEP:
88.32%
LE_num:
LEP:
0.36%
ME_num:
MEP:
7.3%
HE_num:
HEP:
4.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.97
Avg Expression:
278.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| Tip: Osa-phasi02g0504 is not a differential expression ncRNA. | |||