Source:
XM_015769612.2
Strand on PHAS Transcript:
+
Start on PHAS Transcript:
375
Sequence:
UCGCCGACACCCUCCGCACCU
Length:
21
PHAS Gene Name:
LOC4329050
Chr:
Chr2
PHAS Transcript Annotation:
BURP domain-containing protein 4-like
PHAS Transcript Sequence:
UAGAAUUAGUUUUGGAUCAUCACUGCAAAUUGAAGGAUCACACAAAUCAAUGGCUGAGUUGCAUUGUCGUUUUUGUGUUUUUUGGCAUUCUGUAACUUGACCGCCCCUUGCAUAUAUAUGCAGCCAGCUGAAAUUAGCCUUGGCUGGCAUCCUCAAGUUAGAGAAUGCCAAAAACACAAAGGCGGCCGGGAUGCUGUGUCUUGCCGGAAGGCACGAAGCUGACGCUGGCGCACGACGACCACGGCGUGGCUGCAGCGGCGCCAAGGUUCAUCAUCUACAAGGACAAGGCCGACGCCGUGCCGUCCAACCUCCGCGCCAUGGACGCCAUCCUCGCCAUGUUCGGCAUCCUCCCUGGAUCCGACAAGGCGGCGCAGGUCGCCGACACCCUCCGCACCUGCGGCGAAUGACGGCCGCCGGCGGCGAGGAGCCACGCCACCUCCCGCGAGGCGGUGCUCGACUUCGCCGCCUCGGCGCUGGGCACCAGCGCGCCGCGCGCGGUCACCACGCUCGUGCACGGGAGGGAGCCCCGCAGGUACGUGGUAGCGGCCGACGGCGUCGCCCGGAUCGGCGGCGACGCCGUGGUGGCGUGCCACCCUAUGCCAUAUCCAUACGAGGUGUACUACUGCCACCGGCCAGCCGACGCGGUGGCGCUGAGGGUCGACCUCCACGCCGUCGCCGGCGUGGGCCUGGGCGGCGCCACUGCCGUCGACGUGUGCCACGUCAACACCACCACCUGGGACAGUGCCUACUUCGAGCUCCUCAAGGCAAGCCGUGGCGACGCCAUCUGCCACUACAUGCCGCAGGGCUAUGUUCUGUGGCUAGCCAAUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
261
NEP:
95.26%
LE_num:
LEP:
0.36%
ME_num:
MEP:
2.19%
HE_num:
HEP:
2.19%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.95
Avg Expression:
112.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -9.02335917008678 | 3.39628243904341e-06 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -7.64361000505592 | 0.00672255829689448 |